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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    438201 8q5w:D (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438202 8q5w:D (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438203 8q5w:E (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438204 8q5w:E (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438205 8q5w:F (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438206 8q5w:F (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438207 8q5w:G (2.49) BS01 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438208 8q5w:G (2.49) BS02 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438209 8q5w:H (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438210 8q5w:H (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438211 8q5w:I (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438212 8q5w:I (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438213 8q5w:J (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438214 8q5w:J (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438215 8q5w:K (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438216 8q5w:K (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438217 8q5w:L (2.49) BS01 SF4 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438218 8q5w:L (2.49) BS02 ADP 1.18.6.1 GO:0005524 ... D5VUA1 38696373
    438219 8q5x:A (1.7) BS01 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438220 8q5x:A (1.7) BS02 SF4 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438221 8q5x:A (1.7) BS03 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438222 8q5x:B (1.7) BS02 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438223 8q5x:B (1.7) BS03 SF4 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438224 8q5x:B (1.7) BS04 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438225 8q5x:C (1.7) BS01 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438226 8q5x:C (1.7) BS02 SF4 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438227 8q5x:C (1.7) BS03 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438228 8q5x:D (1.7) BS01 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438229 8q5x:D (1.7) BS02 SF4 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438230 8q5x:D (1.7) BS03 ADP 1.18.6.1 GO:0005524 ... P0CW57 38696373
    438231 8q61:A (2.32) BS01 K06 2.7.11.1 GO:0004672 ... P31751 36127435
    438232 8q65:A (2.54) BS01 ATP N/A N/A A0QSU3 39107302
    438233 8q65:A (2.54) BS02 ATP N/A N/A A0QSU3 39107302
    438234 8q65:A (2.54) BS03 ATP N/A N/A A0QSU3 39107302
    438235 8q65:E (2.54) BS01 ATP N/A N/A A0QSU3 39107302
    438236 8q65:E (2.54) BS02 ATP N/A N/A A0QSU3 39107302
    438237 8q68:A (1.58) BS01 K46 ? N/A P28347 37748190
    438238 8q68:B (1.58) BS01 K46 ? N/A P28347 37748190
    438239 8q69:A (1.96) BS01 SAH N/A N/A O43148 N/A
    438240 8q69:A (1.96) BS02 K7R N/A N/A O43148 N/A
    438241 8q69:B (1.96) BS01 SAH N/A N/A O43148 N/A
    438242 8q69:B (1.96) BS02 K7R N/A N/A O43148 N/A
    438243 8q6a:A (2.61) BS01 BDF ? GO:0030246 ... A0A0S4TLR1 38463617
    438244 8q6a:A (2.61) BS02 EVB ? GO:0030246 ... A0A0S4TLR1 38463617
    438245 8q6b:A (1.52) BS01 EVB ? GO:0030246 ... A0A0S4TLR1 38463617
    438246 8q6b:A (1.52) BS02 BDF ? GO:0030246 ... A0A0S4TLR1 38463617
    438247 8q6b:A (1.52) BS03 EVB ? GO:0030246 ... A0A0S4TLR1 38463617
    438248 8q6b:A (1.52) BS04 BDF ? GO:0030246 ... A0A0S4TLR1 38463617
    438249 8q6c:A (1.38) BS01 BDF ? GO:0030246 ... A0A0S4TLR1 38463617
    438250 8q6c:A (1.38) BS02 EVB ? GO:0030246 ... A0A0S4TLR1 38463617
    438251 8q6d:A (1.4) BS03 AKG N/A N/A Q9GZT9 N/A
    438252 8q6e:A (1.37) BS05 AKG N/A N/A Q9GZT9 N/A
    438253 8q6f:A (1.506) BS01 KHR 2.7.1.67 GO:0016301 ... Q9UBF8 38033723
    438254 8q6g:A (1.541) BS01 KIH 2.7.1.67 GO:0016301 ... Q9UBF8 38033723
    438255 8q6h:A (1.94) BS02 KI7 2.7.1.67 GO:0016301 ... Q9UBF8 38033723
    438256 8q6l:AAA (1.72) BS02 KIX N/A N/A P00915 N/A
    438257 8q6l:BBB (1.72) BS02 KIX N/A N/A P00915 N/A
    438258 8q6p:2 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... P55861 37820732
    438259 8q6p:3 (3.53) BS02 ATP 3.6.4.12 GO:0000727 ... P49739 37820732
    438260 8q6p:3 (3.53) BS03 ATP 3.6.4.12 GO:0000727 ... P49739 37820732
    438261 8q6p:5 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... P55862 37820732
    438262 8q6p:5 (3.53) BS02 ATP 3.6.4.12 GO:0000727 ... P55862 37820732
    438263 8q6p:6 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... Q5FWY4 37820732
    438264 8q6p:6 (3.53) BS02 ATP 3.6.4.12 GO:0000727 ... Q5FWY4 37820732
    438265 8q6p:7 (3.53) BS01 ATP 3.6.4.12 GO:0000727 ... Q7ZXB1 37820732
    438266 8q6r:A (1.9) BS01 GCH N/A N/A N/A N/A
    438267 8q6r:A (1.9) BS02 GCH N/A N/A N/A N/A
    438268 8q6r:C (1.9) BS01 FUC N/A N/A P27918 N/A
    438269 8q6r:C (1.9) BS02 MAN N/A N/A P27918 N/A
    438270 8q6r:C (1.9) BS03 MAN N/A N/A P27918 N/A
    438271 8q6r:D (1.9) BS01 FUC N/A N/A P27918 N/A
    438272 8q6r:D (1.9) BS02 MAN N/A N/A P27918 N/A
    438273 8q6r:D (1.9) BS03 MAN N/A N/A P27918 N/A
    438274 8q6r:D (1.9) BS04 MAN N/A N/A P27918 N/A
    438275 8q6r:D (1.9) BS05 MAN N/A N/A P27918 N/A
    438276 8q6r:D (1.9) BS06 MAN N/A N/A P27918 N/A
    438277 8q6r:D (1.9) BS07 MAN N/A N/A P27918 N/A
    438278 8q6r:D (1.9) BS08 MAN N/A N/A P27918 N/A
    438279 8q6r:D (1.9) BS09 MAN N/A N/A P27918 N/A
    438280 8q6r:E (1.9) BS01 FUC N/A N/A P27918 N/A
    438281 8q6r:E (1.9) BS02 MAN N/A N/A P27918 N/A
    438282 8q6r:E (1.9) BS03 MAN N/A N/A P27918 N/A
    438283 8q6r:F (1.9) BS01 FUC N/A N/A P27918 N/A
    438284 8q6r:F (1.9) BS02 MAN N/A N/A P27918 N/A
    438285 8q6r:F (1.9) BS03 MAN N/A N/A P27918 N/A
    438286 8q6r:F (1.9) BS04 MAN N/A N/A P27918 N/A
    438287 8q6r:F (1.9) BS05 MAN N/A N/A P27918 N/A
    438288 8q6r:F (1.9) BS06 MAN N/A N/A P27918 N/A
    438289 8q6r:F (1.9) BS07 MAN N/A N/A P27918 N/A
    438290 8q6r:F (1.9) BS08 MAN N/A N/A P27918 N/A
    438291 8q6r:F (1.9) BS09 MAN N/A N/A P27918 N/A
    438292 8q6x:A (1.91) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    438293 8q6x:B (1.91) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    438294 8q6y:A (1.81) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    438295 8q6y:A (1.81) BS02 YTT N/A GO:0004497 ... A0A0F4JF04 N/A
    438296 8q6y:A (1.81) BS03 HPA N/A GO:0004497 ... A0A0F4JF04 N/A
    438297 8q6y:B (1.81) BS01 HEM N/A GO:0004497 ... A0A0F4JF04 N/A
    438298 8q6y:B (1.81) BS02 HPA N/A GO:0004497 ... A0A0F4JF04 N/A
    438299 8q6y:B (1.81) BS03 HPA N/A GO:0004497 ... A0A0F4JF04 N/A
    438300 8q6z:A (1.96) BS01 HEM N/A N/A N/A N/A
    438301 8q71:A (2.322) BS01 KKO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37992202
    438302 8q71:B (2.322) BS01 KKO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37992202
    438303 8q71:C (2.322) BS01 KKO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37992202
    438304 8q71:D (2.322) BS01 KKO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37992202
    438305 8q72:A (4.17) BS01 ADP ? N/A A0A6D0I2P0 38309275
    438306 8q72:A (4.17) BS02 ADP ? N/A A0A6D0I2P0 38309275
    438307 8q72:B (4.17) BS01 ADP ? N/A A0A6D0I2P0 38309275
    438308 8q72:B (4.17) BS02 ADP ? N/A A0A6D0I2P0 38309275
    438309 8q72:F (4.17) BS01 ADP ? N/A A0A6D0I2P0 38309275
    438310 8q72:F (4.17) BS02 ADP ? N/A A0A6D0I2P0 38309275
    438311 8q72:G (4.17) BS01 ADP ? N/A A0A6D0I2P0 38309275
    438312 8q72:G (4.17) BS02 ADP ? N/A A0A6D0I2P0 38309275
    438313 8q75:A (3.2) BS01 ALF N/A GO:0005524 ... Q6H7M3 38538615
    438314 8q77:A (1.255) BS01 LN3 2.7.11.1 GO:0000785 ... P19784 N/A
    438315 8q77:A (1.255) BS02 LN3 2.7.11.1 GO:0000785 ... P19784 N/A
    438316 8q7g:AAA (1.43) BS02 KIX N/A N/A P00915 N/A
    438317 8q7g:BBB (1.43) BS02 KIX N/A N/A P00915 N/A
    438318 8q7q:C (3.2) BS01 GTP ? GO:0000398 ... Q15029 38467876
    438319 8q7r:C (3.71) BS01 U9O 2.3.2.23 GO:0000209 ... Q712K3 38382526
    438320 8q7v:C (3.8) BS01 GTP ? GO:0000398 ... Q15029 38467876
    438321 8q7w:C (3.9) BS01 GTP ? GO:0000398 ... Q15029 38467876
    438322 8q7x:C (4.6) BS01 GTP ? GO:0000398 ... Q15029 38467876
    438323 8q87:A (2.4) BS03 GDP N/A N/A Q90705 N/A
    438324 8q8g:A (2.4) BS01 SAH N/A N/A O43148 N/A
    438325 8q8g:A (2.4) BS02 O94 N/A N/A O43148 N/A
    438326 8q8g:B (2.4) BS01 SAH N/A N/A O43148 N/A
    438327 8q8g:B (2.4) BS02 O94 N/A N/A O43148 N/A
    438328 8q8i:A (1.77) BS06 O5R N/A N/A Q89410 N/A
    438329 8q8o:B (2.7) BS01 7MT ? N/A A0A0H2ZF40 38505547
    438330 8q91:C (3.1) BS01 GTP ? GO:0000398 ... Q15029 38467877
    438331 8q9s:A (1.352) BS01 QBE 2.7.11.1 GO:0000785 ... P19784 N/A
    438332 8q9u:A (2.0) BS01 NAD 4.2.1.49 GO:0000166 ... A0A6P2DXK2 38389448
    438333 8q9v:A (2.2) BS01 O66 4.2.1.49 GO:0000166 ... A0A6P2DXK2 38389448
    438334 8q9v:A (2.2) BS02 NAD 4.2.1.49 GO:0000166 ... A0A6P2DXK2 38389448
    438335 8q9w:A (2.5) BS01 SFG N/A N/A O43148 N/A
    438336 8q9w:B (2.5) BS01 SFG N/A N/A O43148 N/A
    438337 8q9w:B (2.5) BS02 GNP N/A N/A O43148 N/A
    438338 8q9x:A (1.05) BS01 OXY ? GO:0046872 ... A0A5C7ETD9 N/A
    438339 8q9y:A (1.1) BS01 TOU ? GO:0046872 ... A0A5C7ETD9 N/A
    438340 8qa4:A (2.8) BS01 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    438341 8qa4:B (2.8) BS01 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    438342 8qa5:A (3.14) BS01 FAD 1.5.1.53 GO:0001666 ... P42898 38622112
    438343 8qa5:A (3.14) BS02 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    438344 8qa5:B (3.14) BS01 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    438345 8qa6:A (2.91) BS01 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    438346 8qa6:A (2.91) BS02 FAD 1.5.1.53 GO:0001666 ... P42898 38622112
    438347 8qa6:A (2.91) BS03 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    438348 8qa6:B (2.91) BS01 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    438349 8qa6:B (2.91) BS02 FAD 1.5.1.53 GO:0001666 ... P42898 38622112
    438350 8qa6:B (2.91) BS03 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    438351 8qa8:A (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    438352 8qa8:A (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    438353 8qa8:B (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    438354 8qa8:B (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    438355 8qa8:C (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    438356 8qa8:C (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    438357 8qa8:D (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    438358 8qa8:D (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    438359 8qa8:E (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    438360 8qa8:E (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    438361 8qa8:F (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    438362 8qa8:F (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    438363 8qal:A (1.3) BS01 GQX N/A N/A O60885 N/A
    438364 8qan:A (1.25) BS01 GKI N/A N/A O60885 N/A
    438365 8qap:A (1.4) BS01 Q9U N/A N/A O60885 N/A
    438366 8qar:A (1.5) BS01 GI0 N/A N/A O60885 N/A
    438367 8qau:C (3.54) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    438368 8qau:D (3.54) BS01 GDP ? GO:0000226 ... P02554 N/A
    438369 8qau:D (3.54) BS02 TA1 ? GO:0000226 ... P02554 N/A
    438370 8qav:A (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438371 8qav:B (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438372 8qav:C (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438373 8qav:D (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438374 8qav:E (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438375 8qav:F (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438376 8qav:G (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438377 8qav:H (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438378 8qav:I (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438379 8qav:J (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438380 8qav:K (2.23) BS03 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438381 8qav:L (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438382 8qav:M (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438383 8qav:N (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438384 8qav:O (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438385 8qav:P (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438386 8qav:Q (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438387 8qav:R (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438388 8qav:S (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438389 8qav:T (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438390 8qav:V (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438391 8qav:W (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438392 8qav:X (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438393 8qav:Y (2.23) BS01 IG2 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438394 8qaw:A (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438395 8qaw:A (1.55) BS04 GOL 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438396 8qaw:B (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438397 8qaw:C (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438398 8qaw:D (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438399 8qaw:E (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    438400 8qaw:F (1.55) BS01 IMD 4.2.1.19 GO:0000105 ... A0A072VQG6 38559763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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