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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    437801 8q2v:B (1.71) BS01 IUQ ? GO:0003723 ... Q96MU7 38787793
    437802 8q2w:A (1.41) BS01 IUZ ? GO:0003723 ... Q96MU7 38787793
    437803 8q2w:B (1.41) BS01 IUZ ? GO:0003723 ... Q96MU7 38787793
    437804 8q2x:A (1.6) BS01 IV6 ? GO:0003723 ... Q96MU7 38787793
    437805 8q2x:B (1.6) BS01 IV6 ? GO:0003723 ... Q96MU7 38787793
    437806 8q2y:A (1.71) BS01 IVI ? GO:0003723 ... Q96MU7 38787793
    437807 8q2y:B (1.71) BS01 IVI ? GO:0003723 ... Q96MU7 38787793
    437808 8q2z:A (1.88) BS02 COA N/A N/A P30419 N/A
    437809 8q2z:B (1.88) BS02 COA N/A N/A P30419 N/A
    437810 8q31:A (1.32) BS01 IVR ? GO:0003723 ... Q96MU7 38787793
    437811 8q31:B (1.32) BS01 IVR ? GO:0003723 ... Q96MU7 38787793
    437812 8q32:A (1.43) BS01 IW0 ? GO:0003723 ... Q96MU7 38787793
    437813 8q32:B (1.43) BS01 IW0 ? GO:0003723 ... Q96MU7 38787793
    437814 8q33:A (1.43) BS01 IWV ? GO:0003723 ... Q96MU7 38787793
    437815 8q33:B (1.43) BS01 IWV ? GO:0003723 ... Q96MU7 38787793
    437816 8q34:A (1.48) BS01 IX4 ? N/A O60885 39085342
    437817 8q34:B (1.48) BS01 IX4 ? N/A O60885 39085342
    437818 8q34:C (1.48) BS01 IX4 ? N/A O60885 39085342
    437819 8q34:D (1.48) BS01 IX4 ? N/A O60885 39085342
    437820 8q35:A (1.31) BS01 IWM ? GO:0003723 ... Q96MU7 38787793
    437821 8q35:B (1.31) BS01 IWM ? GO:0003723 ... Q96MU7 38787793
    437822 8q37:A (1.28) BS01 IWF ? GO:0003723 ... Q96MU7 38787793
    437823 8q37:B (1.28) BS01 IWF ? GO:0003723 ... Q96MU7 38787793
    437824 8q38:A (1.42) BS01 IZJ ? GO:0003723 ... Q96MU7 38787793
    437825 8q38:B (1.42) BS01 IZJ ? GO:0003723 ... Q96MU7 38787793
    437826 8q39:A (1.42) BS01 K1O ? GO:0003723 ... Q96MU7 38787793
    437827 8q39:B (1.42) BS01 K1O ? GO:0003723 ... Q96MU7 38787793
    437828 8q3a:A (1.43) BS01 IYQ ? GO:0003723 ... Q96MU7 38787793
    437829 8q3a:B (1.43) BS01 IYQ ? GO:0003723 ... Q96MU7 38787793
    437830 8q3d:A (2.15) BS02 COA N/A N/A P30419 N/A
    437831 8q3d:B (2.15) BS02 COA N/A N/A P30419 N/A
    437832 8q3g:A (1.42) BS01 J7L ? GO:0003723 ... Q96MU7 38787793
    437833 8q3g:B (1.42) BS01 J7L ? GO:0003723 ... Q96MU7 38787793
    437834 8q3n:A (2.63) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437835 8q3n:B (2.63) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437836 8q3n:B (2.63) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437837 8q3n:C (2.63) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437838 8q3n:C (2.63) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437839 8q3n:D (2.63) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437840 8q3n:E (2.63) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437841 8q3n:E (2.63) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437842 8q3n:F (2.63) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437843 8q3o:A (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437844 8q3o:B (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437845 8q3o:B (3.0) BS02 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437846 8q3o:C (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437847 8q3o:C (3.0) BS02 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437848 8q3o:D (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437849 8q3o:E (3.0) BS01 0O2 3.6.4.- GO:0003676 ... P0AG30 37645988
    437850 8q3p:a (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437851 8q3p:a (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437852 8q3p:b (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437853 8q3p:b (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437854 8q3p:c (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437855 8q3p:c (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437856 8q3p:d (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437857 8q3p:d (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437858 8q3p:e (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437859 8q3p:e (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437860 8q3p:f (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437861 8q3p:f (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437862 8q3p:g (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437863 8q3p:g (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437864 8q3p:h (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437865 8q3p:h (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437866 8q3p:i (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437867 8q3p:i (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437868 8q3p:j (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437869 8q3p:j (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437870 8q3p:k (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437871 8q3p:k (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437872 8q3p:l (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437873 8q3p:l (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437874 8q3p:m (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437875 8q3p:m (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437876 8q3p:n (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437877 8q3p:n (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437878 8q3p:o (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437879 8q3p:o (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437880 8q3p:p (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437881 8q3p:p (3.5) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437882 8q3p:q (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437883 8q3p:r (3.5) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437884 8q3q:a (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437885 8q3q:b (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437886 8q3q:c (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437887 8q3q:d (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437888 8q3q:e (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437889 8q3q:f (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437890 8q3q:g (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437891 8q3q:h (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437892 8q3q:i (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437893 8q3q:j (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437894 8q3q:k (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437895 8q3q:l (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437896 8q3q:m (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437897 8q3q:n (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437898 8q3q:o (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437899 8q3q:p (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437900 8q3q:q (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437901 8q3q:r (3.3) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 37645988
    437902 8q3s:A (1.78) BS02 COA N/A N/A P30419 N/A
    437903 8q3s:B (1.78) BS02 COA N/A N/A P30419 N/A
    437904 8q3t:A (1.96) BS02 COA N/A N/A P30419 N/A
    437905 8q3t:B (1.96) BS02 COA N/A N/A P30419 N/A
    437906 8q3u:A (1.1) BS02 J8I 4.2.1.1 GO:0004089 ... P43166 37678143
    437907 8q3v:A (2.08) BS01 JCV N/A GO:0005886 ... P80184 38530900
    437908 8q3v:A (2.08) BS02 JCV N/A GO:0005886 ... P80184 38530900
    437909 8q3v:B (2.08) BS02 JCV N/A GO:0005886 ... Q59584 38530900
    437910 8q3v:C (2.08) BS01 JCV N/A GO:0005886 ... P80185 38530900
    437911 8q3v:E (2.08) BS01 JCV N/A GO:0005886 ... P80186 38530900
    437912 8q3v:E (2.08) BS02 JCV N/A GO:0005886 ... P80186 38530900
    437913 8q3v:F (2.08) BS01 JCV N/A GO:0005886 ... Q50773 38530900
    437914 8q3v:F (2.08) BS02 JCV N/A GO:0005886 ... Q50773 38530900
    437915 8q3v:G (2.08) BS01 JCV N/A GO:0005886 ... Q50774 38530900
    437916 8q3v:G (2.08) BS02 JCV N/A GO:0005886 ... Q50774 38530900
    437917 8q3v:Q (2.08) BS01 JCV N/A GO:0005886 ... P80184 38530900
    437918 8q3v:Q (2.08) BS02 JCV N/A GO:0005886 ... P80184 38530900
    437919 8q3v:Q (2.08) BS03 JCV N/A GO:0005886 ... P80184 38530900
    437920 8q3v:R (2.08) BS01 JCV N/A GO:0005886 ... Q59584 38530900
    437921 8q3v:S (2.08) BS01 JCV N/A GO:0005886 ... P80185 38530900
    437922 8q3v:U (2.08) BS01 JCV N/A GO:0005886 ... P80186 38530900
    437923 8q3v:U (2.08) BS02 JCV N/A GO:0005886 ... P80186 38530900
    437924 8q3v:U (2.08) BS03 JCV N/A GO:0005886 ... P80186 38530900
    437925 8q3v:U (2.08) BS04 JCV N/A GO:0005886 ... P80186 38530900
    437926 8q3v:V (2.08) BS01 JCV N/A GO:0005886 ... Q50773 38530900
    437927 8q3v:V (2.08) BS02 JCV N/A GO:0005886 ... Q50773 38530900
    437928 8q3v:W (2.08) BS01 JCV N/A GO:0005886 ... Q50774 38530900
    437929 8q3v:W (2.08) BS02 JCV N/A GO:0005886 ... Q50774 38530900
    437930 8q3v:a (2.08) BS01 JCV N/A GO:0005886 ... P80184 38530900
    437931 8q3v:a (2.08) BS02 JCV N/A GO:0005886 ... P80184 38530900
    437932 8q3v:a (2.08) BS03 JCV N/A GO:0005886 ... P80184 38530900
    437933 8q3v:b (2.08) BS02 JCV N/A GO:0005886 ... Q59584 38530900
    437934 8q3v:b (2.08) BS03 JCV N/A GO:0005886 ... Q59584 38530900
    437935 8q3v:c (2.08) BS01 JCV N/A GO:0005886 ... P80185 38530900
    437936 8q3v:d (2.08) BS01 JCV N/A GO:0005886 ... P80183 38530900
    437937 8q3v:e (2.08) BS01 JCV N/A GO:0005886 ... P80186 38530900
    437938 8q3v:e (2.08) BS02 JCV N/A GO:0005886 ... P80186 38530900
    437939 8q3v:e (2.08) BS03 JCV N/A GO:0005886 ... P80186 38530900
    437940 8q3v:f (2.08) BS01 JCV N/A GO:0005886 ... Q50773 38530900
    437941 8q3v:f (2.08) BS02 JCV N/A GO:0005886 ... Q50773 38530900
    437942 8q3v:g (2.08) BS01 JCV N/A GO:0005886 ... Q50774 38530900
    437943 8q3v:g (2.08) BS02 JCV N/A GO:0005886 ... Q50774 38530900
    437944 8q3w:A (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437945 8q3w:B (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437946 8q3w:C (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437947 8q3w:D (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437948 8q3w:D (3.18) BS03 ATP N/A GO:0005524 ... Q45619 38926614
    437949 8q3w:E (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437950 8q3w:F (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437951 8q3w:G (3.18) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    437952 8q3w:G (3.18) BS03 ATP N/A GO:0005524 ... Q45619 38926614
    437953 8q3w:H (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437954 8q3w:I (3.18) BS01 ATP N/A GO:0005524 ... Q45619 38926614
    437955 8q3w:J (3.18) BS02 ATP N/A GO:0005524 ... Q45619 38926614
    437956 8q3x:EEE (2.301) BS03 XIS ? GO:0000786 ... P68431 38495982
    437957 8q45:B (2.7) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437958 8q45:B (2.7) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    437959 8q45:D (2.7) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    437960 8q45:D (2.7) BS02 U10 7.1.1.2 GO:0003954 ... P17694 38870289
    437961 8q45:E (2.7) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437962 8q45:F (2.7) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437963 8q45:F (2.7) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437964 8q45:G (2.7) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437965 8q45:G (2.7) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437966 8q45:G (2.7) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437967 8q45:H (2.7) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    437968 8q45:I (2.7) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437969 8q45:I (2.7) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437970 8q45:O (2.7) BS01 DGT ? GO:0005737 ... P34942 38870289
    437971 8q45:P (2.7) BS01 NDP ? GO:0005739 ... P34943 38870289
    437972 8q45:T (2.7) BS01 EHZ ? GO:0000035 ... P52505 38870289
    437973 8q45:W (2.7) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    437974 8q45:n (2.7) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    437975 8q46:B (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437976 8q46:D (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    437977 8q46:E (2.6) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437978 8q46:F (2.6) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437979 8q46:F (2.6) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437980 8q46:G (2.6) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437981 8q46:G (2.6) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437982 8q46:G (2.6) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    437983 8q46:I (2.6) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437984 8q46:I (2.6) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    437985 8q46:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    437986 8q46:P (2.6) BS01 NDP ? GO:0005739 ... P34943 38870289
    437987 8q46:T (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    437988 8q46:U (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    437989 8q46:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    437990 8q46:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    437991 8q47:B (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    437992 8q47:B (2.9) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    437993 8q47:D (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    437994 8q47:E (2.9) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    437995 8q47:F (2.9) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    437996 8q47:F (2.9) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    437997 8q47:G (2.9) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437998 8q47:G (2.9) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    437999 8q47:G (2.9) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    438000 8q47:H (2.9) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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