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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    436601 8plc:A (2.34) BS02 A7N 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436602 8plc:B (2.34) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436603 8plc:B (2.34) BS02 A7N 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436604 8pld:A (1.85) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436605 8pld:A (1.85) BS02 T9Q 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436606 8pld:A (1.85) BS03 T9Q 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436607 8pld:B (1.85) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436608 8pld:B (1.85) BS02 T9Q 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436609 8pld:B (1.85) BS03 T9Q 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436610 8ple:A (1.94) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436611 8ple:A (1.94) BS02 VZS 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436612 8ple:A (1.94) BS03 VZS 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436613 8ple:A (1.94) BS04 VZS 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436614 8ple:B (1.94) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436615 8ple:B (1.94) BS02 VZS 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436616 8plf:A (1.95) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436617 8plf:A (1.95) BS02 NZ1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436618 8plf:A (1.95) BS03 NZ1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436619 8plf:B (1.95) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436620 8plf:B (1.95) BS02 NZ1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436621 8plg:A (1.75) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436622 8plg:A (1.75) BS02 YI6 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436623 8plh:A (1.62) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436624 8plh:A (1.62) BS02 GVY 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436625 8plh:A (1.62) BS03 GVY 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436626 8pli:A (2.33) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436627 8pli:A (2.33) BS02 WZY 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436628 8pli:B (2.33) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436629 8plj:A (2.18) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436630 8plj:A (2.18) BS02 ZP8 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436631 8plj:B (2.18) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436632 8plj:B (2.18) BS02 ZP8 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436633 8plk:A (1.82) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436634 8plk:A (1.82) BS02 JO1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436635 8plk:A (1.82) BS03 JO1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436636 8plk:B (1.82) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436637 8plk:B (1.82) BS02 JO1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436638 8plk:B (1.82) BS03 JO1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436639 8pll:A (1.85) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436640 8pll:A (1.85) BS02 AYV 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436641 8plm:A (1.95) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436642 8plm:A (1.95) BS02 JJ7 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436643 8plm:A (1.95) BS03 JJ7 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436644 8pln:A (2.8) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436645 8pln:A (2.8) BS02 ZPI 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436646 8plo:A (1.74) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436647 8plo:A (1.74) BS02 WLY 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436648 8plo:A (1.74) BS03 WLY 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436649 8plo:B (1.74) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436650 8plo:B (1.74) BS02 WLY 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436651 8plp:A (2.28) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436652 8plp:A (2.28) BS02 WO1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436653 8plp:B (2.28) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436654 8plp:B (2.28) BS02 WO1 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436655 8plq:A (2.29) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436656 8plq:B (2.29) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436657 8plq:B (2.29) BS02 TEK 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436658 8plr:A (2.72) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436659 8plr:A (2.72) BS02 MJ4 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436660 8plr:B (2.72) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436661 8pls:A (1.8) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436662 8pls:A (1.8) BS02 B0M 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436663 8pls:B (1.8) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436664 8pls:B (1.8) BS02 B0M 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436665 8plt:A (2.33) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436666 8plt:A (2.33) BS02 NVD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436667 8plt:B (2.33) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436668 8plu:A (2.04) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436669 8plu:A (2.04) BS02 ZPU 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436670 8plu:A (2.04) BS03 ZPU 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436671 8plu:B (2.04) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436672 8plu:B (2.04) BS02 ZPU 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436673 8plu:B (2.04) BS03 ZPU 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436674 8plv:A (2.46) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436675 8plv:A (2.46) BS02 UXG 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436676 8plv:B (2.46) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436677 8plv:B (2.46) BS02 UXG 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436678 8plw:A (1.78) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436679 8plw:A (1.78) BS02 Q4L 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436680 8plw:A (1.78) BS03 Q4L 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436681 8plw:B (1.78) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436682 8plw:B (1.78) BS02 Q4L 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436683 8plx:A (1.77) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436684 8plx:A (1.77) BS02 O1M 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436685 8plx:B (1.77) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436686 8plx:B (1.77) BS02 O1M 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436687 8ply:A (2.43) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436688 8ply:B (2.43) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436689 8ply:B (2.43) BS02 JKG 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436690 8plz:J (1.9) BS01 ZQ6 2.7.11.22
    2.7.11.23    		 GO:0000307 ... P50613 38480681
    436691 8pm1:A (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 38038877
    436692 8pm1:B (1.5) BS01 FMN 2.7.13.3 N/A B8GAY9 38038877
    436693 8pm2:R (2.92) BS01 8IA ? GO:0001594 ... Q5QD08 37461561
    436694 8pm2:R (2.92) BS02 Y01 ? GO:0001594 ... Q5QD08 37461561
    436695 8pm3:A (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 N/A
    436696 8pm3:B (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 N/A
    436697 8pm3:C (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 N/A
    436698 8pm3:D (2.0) BS01 ZLE 2.7.12.2 GO:0004672 ... P52564 N/A
    436699 8pm6:A (3.22) BS01 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436700 8pm6:A (3.22) BS02 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436701 8pm6:A (3.22) BS03 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436702 8pm6:A (3.22) BS04 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436703 8pm6:A (3.22) BS05 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436704 8pm6:A (3.22) BS06 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436705 8pm6:A (3.22) BS07 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436706 8pm6:A (3.22) BS08 GBM 7.6.2.- GO:0000139 ... O95342 37949847
    436707 8pm8:A (1.57) BS01 TCW ? GO:0005179 ... P02766 37837673
    436708 8pm8:B (1.57) BS01 TCW ? GO:0005179 ... P02766 37837673
    436709 8pm9:A (1.85) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    436710 8pm9:B (1.85) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    436711 8pma:A (1.2) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    436712 8pma:B (1.2) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    436713 8pmd:A (2.95) BS01 ATP 7.6.2.- GO:0000139 ... O95342 37949847
    436714 8pmd:A (2.95) BS02 ATP 7.6.2.- GO:0000139 ... O95342 37949847
    436715 8pme:A (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    436716 8pme:B (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    436717 8pme:C (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    436718 8pmg:A (3.29) BS01 ATP ? N/A B4XT64 38600265
    436719 8pmg:B (3.29) BS01 ATP ? N/A B4XT64 38600265
    436720 8pmg:C (3.29) BS01 ATP ? N/A B4XT64 38600265
    436721 8pmg:D (3.29) BS01 ATP ? N/A B4XT64 38600265
    436722 8pmg:E (3.29) BS01 ATP ? N/A B4XT64 38600265
    436723 8pmg:F (3.29) BS01 ATP ? N/A B4XT64 38600265
    436724 8pmi:A (2.83) BS01 ATP ? N/A B4XT64 38600265
    436725 8pmi:B (2.83) BS01 ATP ? N/A B4XT64 38600265
    436726 8pmi:C (2.83) BS01 ATP ? N/A B4XT64 38600265
    436727 8pmi:D (2.83) BS01 ATP ? N/A B4XT64 38600265
    436728 8pmi:E (2.83) BS01 ATP ? N/A B4XT64 38600265
    436729 8pmi:F (2.83) BS01 ATP ? N/A B4XT64 38600265
    436730 8pmj:A (2.81) BS01 ATP 7.6.2.- GO:0000139 ... O95342 37949847
    436731 8pmj:A (2.81) BS02 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436732 8pmj:A (2.81) BS03 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    436733 8pmj:A (2.81) BS04 ADP 7.6.2.- GO:0000139 ... O95342 37949847
    436734 8pmj:A (2.81) BS05 VO4 7.6.2.- GO:0000139 ... O95342 37949847
    436735 8pmk:A (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    436736 8pmk:B (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    436737 8pmk:C (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    436738 8pmk:D (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    436739 8pmk:E (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    436740 8pmk:F (2.43) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    436741 8pml:A (2.95) BS01 ATP ? N/A B4XT64 38600265
    436742 8pml:B (2.95) BS01 ATP ? N/A B4XT64 38600265
    436743 8pml:C (2.95) BS01 ATP ? N/A B4XT64 38600265
    436744 8pml:D (2.95) BS01 ATP ? N/A B4XT64 38600265
    436745 8pml:E (2.95) BS01 ATP ? N/A B4XT64 38600265
    436746 8pml:F (2.95) BS01 ATP ? N/A B4XT64 38600265
    436747 8pmm:A (1.75) BS01 ATP ? N/A B4XT64 38600265
    436748 8pmm:B (1.75) BS01 ATP ? N/A B4XT64 38600265
    436749 8pmm:C (1.75) BS01 ATP ? N/A B4XT64 38600265
    436750 8pmo:A (1.24) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    436751 8pmo:B (1.24) BS01 ZP2 ? GO:0005179 ... P02766 37837673
    436752 8pmp:B (3.43) BS02 MGT ? GO:0000184 ... P52298 38175753
    436753 8pmr:B (1.94) BS01 MAN 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 37934975
    436754 8pms:D (2.4) BS01 FUC 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 37934975
    436755 8pn1:A (2.4) BS01 ATP ? N/A B4XT64 38600265
    436756 8pn1:B (2.4) BS01 ATP ? N/A B4XT64 38600265
    436757 8pn1:C (2.4) BS01 ATP ? N/A B4XT64 38600265
    436758 8pn1:D (2.4) BS01 ATP ? N/A B4XT64 38600265
    436759 8pn1:E (2.4) BS01 ATP ? N/A B4XT64 38600265
    436760 8pn1:F (2.4) BS01 ATP ? N/A B4XT64 38600265
    436761 8pn2:A (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    436762 8pn2:B (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    436763 8pn2:C (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    436764 8pn2:D (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    436765 8pn2:E (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    436766 8pn2:F (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    436767 8pn7:A (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436768 8pn7:A (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436769 8pn7:A (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436770 8pn7:B (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436771 8pn7:B (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436772 8pn7:B (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436773 8pn7:C (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436774 8pn7:C (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436775 8pn7:C (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436776 8pn7:D (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436777 8pn7:D (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436778 8pn7:D (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436779 8pn7:E (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436780 8pn7:E (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436781 8pn7:E (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436782 8pn7:F (2.03) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436783 8pn7:F (2.03) BS02 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436784 8pn7:F (2.03) BS03 BTI 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436785 8pn7:G (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436786 8pn7:H (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436787 8pn7:I (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436788 8pn7:J (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436789 8pn7:K (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436790 8pn7:L (2.03) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436791 8pn8:A (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436792 8pn8:B (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436793 8pn8:C (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436794 8pn8:D (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436795 8pn8:E (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436796 8pn8:F (2.31) BS01 COA 6.4.1.3 GO:0004658 ... C5AP75 37983631
    436797 8pn8:G (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436798 8pn8:H (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436799 8pn8:I (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    436800 8pn8:J (2.31) BS01 BTI 6.4.1.3 GO:0004658 ... C5AWU5 37983631
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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