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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    436201 8pdf:A (1.2) BS01 Y5Q 5.2.1.8 GO:0000413 ... P62942 37942685
    436202 8pdg:AAA (1.4) BS01 YBP 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    436203 8pdh:AAA (1.45) BS01 YBU 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    436204 8pdi:A (1.3) BS01 YBZ 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    436205 8pdj:AAA (1.4) BS01 YC5 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    436206 8pdk:A (2.0) BS01 C2E N/A N/A Q5SLC9 N/A
    436207 8pdk:B (2.0) BS01 C2E N/A N/A Q5SLC9 N/A
    436208 8pdt:A (1.09) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    436209 8pdt:A (1.09) BS02 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    436210 8pdt:A (1.09) BS03 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436211 8pdu:A (3.22) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    436212 8pdu:B (3.22) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    436213 8pdv:A (3.26) BS01 PCG ? GO:0006812 ... A3RL54 37880361
    436214 8pe0:A (1.9) BS01 C2E N/A N/A Q5SLC9 N/A
    436215 8pe0:B (1.9) BS01 C2E N/A N/A Q5SLC9 N/A
    436216 8pe1:A (1.9) BS01 MAN N/A N/A P0C956 38856634
    436217 8pe1:A (1.9) BS02 MAN N/A N/A P0C956 38856634
    436218 8pe1:A (1.9) BS03 MAN N/A N/A P0C956 38856634
    436219 8pe1:A (1.9) BS04 MAN N/A N/A P0C956 38856634
    436220 8pe1:A (1.9) BS05 MAN N/A N/A P0C956 38856634
    436221 8pe1:A (1.9) BS06 MAN N/A N/A P0C956 38856634
    436222 8pe1:B (1.9) BS01 MAN N/A N/A P0C956 38856634
    436223 8pe1:B (1.9) BS02 MAN N/A N/A P0C956 38856634
    436224 8pe1:B (1.9) BS03 MAN N/A N/A P0C956 38856634
    436225 8pe1:B (1.9) BS04 MAN N/A N/A P0C956 38856634
    436226 8pe1:B (1.9) BS05 MAN N/A N/A P0C956 38856634
    436227 8pe2:A (2.05) BS01 MAN N/A N/A P0C956 38856634
    436228 8pe2:A (2.05) BS02 MAN N/A N/A P0C956 38856634
    436229 8pe2:A (2.05) BS03 MAN N/A N/A P0C956 38856634
    436230 8pec:A (2.66) BS01 CTJ 3.5.2.6 GO:0008658 ... Q6XEC0 38828429
    436231 8pec:C (2.66) BS01 CTJ 3.5.2.6 GO:0008658 ... Q6XEC0 38828429
    436232 8pec:D (2.66) BS01 CTJ 3.5.2.6 GO:0008658 ... Q6XEC0 38828429
    436233 8ped:A (1.1) BS01 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    436234 8ped:A (1.1) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436235 8ped:A (1.1) BS03 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    436236 8ped:A (1.1) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436237 8pee:A (3.8) BS01 JJI 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436238 8pee:A (3.8) BS02 JIZ 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436239 8pee:A (3.8) BS03 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436240 8pee:A (3.8) BS04 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436241 8pee:A (3.8) BS05 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436242 8pee:A (3.8) BS06 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436243 8pee:A (3.8) BS07 Y01 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    436244 8pej:A (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436245 8pej:B (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436246 8pej:C (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436247 8pej:D (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436248 8pej:D (1.5) BS02 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436249 8pej:E (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436250 8pej:F (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436251 8pej:F (1.5) BS02 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436252 8pej:G (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436253 8pej:H (1.5) BS01 YGX 3.2.1.23 GO:0004565 ... B3PBE0 37724332
    436254 8pem:A (2.0) BS01 AT9 N/A N/A Q32ZE1 N/A
    436255 8pem:A (2.0) BS02 SAH N/A N/A Q32ZE1 N/A
    436256 8peo:A (2.69) BS03 M2L ? GO:0000786 ... P84233 37615563
    436257 8peo:K (2.69) BS02 M2L ? GO:0000395 ... O75475 37615563
    436258 8peu:A (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436259 8peu:B (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436260 8peu:B (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436261 8peu:C (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436262 8peu:D (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436263 8peu:D (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436264 8peu:E (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436265 8peu:E (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436266 8peu:F (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436267 8peu:I (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436268 8peu:J (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436269 8peu:J (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436270 8peu:K (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436271 8peu:K (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436272 8peu:L (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436273 8peu:L (3.7) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436274 8peu:M (3.7) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436275 8pew:A (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436276 8pew:B (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436277 8pew:B (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436278 8pew:C (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436279 8pew:C (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436280 8pew:D (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436281 8pew:E (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436282 8pew:E (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436283 8pew:F (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436284 8pew:F (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436285 8pew:G (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436286 8pew:H (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436287 8pew:I (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436288 8pew:J (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436289 8pew:J (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436290 8pew:K (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436291 8pew:L (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436292 8pew:L (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436293 8pew:M (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436294 8pew:M (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436295 8pew:N (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436296 8pew:N (4.3) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436297 8pew:O (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436298 8pew:P (4.3) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436299 8pew:p (4.3) BS01 AGS N/A GO:1990216 ... P05460 N/A
    436300 8pex:A (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436301 8pex:B (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436302 8pex:C (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436303 8pex:C (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436304 8pex:D (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436305 8pex:E (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436306 8pex:E (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436307 8pex:F (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436308 8pex:I (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436309 8pex:J (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436310 8pex:J (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436311 8pex:K (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436312 8pex:K (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436313 8pex:L (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436314 8pex:L (3.1) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436315 8pex:M (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436316 8pex:N (3.1) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436317 8pey:A (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436318 8pey:B (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436319 8pey:C (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436320 8pey:D (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436321 8pey:E (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436322 8pey:F (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436323 8pey:F (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436324 8pey:G (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436325 8pey:G (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436326 8pey:I (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436327 8pey:J (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436328 8pey:J (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436329 8pey:K (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436330 8pey:K (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436331 8pey:L (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436332 8pey:M (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436333 8pey:M (3.0) BS02 AGS N/A GO:0003723 ... P0AG30 N/A
    436334 8pey:N (3.0) BS01 AGS N/A GO:0003723 ... P0AG30 N/A
    436335 8pf2:A (2.1) BS01 RCO N/A N/A Q56310 38917423
    436336 8pf2:B (2.1) BS01 RCO N/A N/A Q56310 38917423
    436337 8pf3:A (2.15) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436338 8pf3:A (2.15) BS02 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436339 8pf3:A (2.15) BS03 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436340 8pf3:B (2.15) BS01 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436341 8pf3:B (2.15) BS02 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436342 8pf3:B (2.15) BS03 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436343 8pf3:C (2.15) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436344 8pf3:C (2.15) BS02 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436345 8pf3:C (2.15) BS03 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436346 8pf3:D (2.15) BS01 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436347 8pf3:D (2.15) BS02 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436348 8pf3:D (2.15) BS03 YJ6 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436349 8pf4:A (1.84) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436350 8pf4:A (1.84) BS02 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436351 8pf4:A (1.84) BS03 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436352 8pf4:B (1.84) BS01 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436353 8pf4:B (1.84) BS02 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436354 8pf4:B (1.84) BS03 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436355 8pf4:C (1.84) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436356 8pf4:C (1.84) BS02 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436357 8pf4:C (1.84) BS03 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436358 8pf4:D (1.84) BS01 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436359 8pf4:D (1.84) BS02 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436360 8pf4:D (1.84) BS03 YIA 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436361 8pf5:A (2.42) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436362 8pf5:A (2.42) BS02 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436363 8pf5:A (2.42) BS03 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436364 8pf5:B (2.42) BS01 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436365 8pf5:B (2.42) BS02 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436366 8pf5:B (2.42) BS03 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436367 8pf5:C (2.42) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436368 8pf5:C (2.42) BS02 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436369 8pf5:C (2.42) BS03 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436370 8pf5:D (2.42) BS01 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436371 8pf5:D (2.42) BS02 FAD 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436372 8pf5:D (2.42) BS03 YJK 1.8.1.12 GO:0000166 ... Q389T8 38164929
    436373 8pf8:A (2.23) BS01 YMK 1.1.1.35 GO:0000166 ... O53872 39012716
    436374 8pf8:A (2.23) BS02 YLZ 1.1.1.35 GO:0000166 ... O53872 39012716
    436375 8pf8:A (2.23) BS03 JXL 1.1.1.35 GO:0000166 ... O53872 39012716
    436376 8pf8:A (2.23) BS04 JXL 1.1.1.35 GO:0000166 ... O53872 39012716
    436377 8pf8:A (2.23) BS05 YLN 1.1.1.35 GO:0000166 ... O53872 39012716
    436378 8pf8:B (2.23) BS01 YLZ 1.1.1.35 GO:0000166 ... O53872 39012716
    436379 8pf8:B (2.23) BS02 JXL 1.1.1.35 GO:0000166 ... O53872 39012716
    436380 8pf8:B (2.23) BS03 JXL 1.1.1.35 GO:0000166 ... O53872 39012716
    436381 8pf8:B (2.23) BS04 YLN 1.1.1.35 GO:0000166 ... O53872 39012716
    436382 8pf8:C (2.23) BS01 JXL 2.3.1.- GO:0005886 ... O53871 39012716
    436383 8pf8:D (2.23) BS01 JXL 2.3.1.- GO:0005886 ... O53871 39012716
    436384 8pf9:A (1.09) BS01 YJO ? GO:0030246 ... P17931 37878264
    436385 8pfa:A (1.8) BS01 C2E N/A N/A Q5SLC9 N/A
    436386 8pfa:B (1.8) BS01 C2E N/A N/A Q5SLC9 N/A
    436387 8pff:A (1.08) BS01 YJF ? GO:0030246 ... P17931 37878264
    436388 8pfh:A (3.24) BS01 GDP ? GO:0000144 ... P25342 38184752
    436389 8pfh:A (3.24) BS02 GDP ? GO:0000144 ... P25342 38184752
    436390 8pfh:B (3.24) BS01 GDP ? GO:0005525 ... P32457 38184752
    436391 8pfh:B (3.24) BS02 GDP ? GO:0005525 ... P32457 38184752
    436392 8pfh:C (3.24) BS01 GDP ? GO:0005525 ... P32468 38184752
    436393 8pfh:C (3.24) BS02 GDP ? GO:0005525 ... P32468 38184752
    436394 8pfh:D (3.24) BS01 GDP ? GO:0005525 ... Q07657 38184752
    436395 8pfh:D (3.24) BS02 GDP ? GO:0005525 ... Q07657 38184752
    436396 8pfi:A (2.785) BS01 YHG ? GO:0002224 ... Q9NR97 37583811
    436397 8pfi:A (2.785) BS02 YHG ? GO:0002224 ... Q9NR97 37583811
    436398 8pfi:B (2.785) BS01 YHG ? GO:0002224 ... Q9NR97 37583811
    436399 8pfi:B (2.785) BS02 YHG ? GO:0002224 ... Q9NR97 37583811
    436400 8pfl:A (1.8) BS02 YH8 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 38658754
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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