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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    436001 8p97:A (2.75) BS01 CNC ? GO:0009279 ... Q8A5Z2 37543597
    436002 8p97:B (2.75) BS01 CNC ? N/A Q8A5Z1 37543597
    436003 8p98:B (2.97) BS01 CNC ? N/A Q8A5Z1 37543597
    436004 8p9b:A (2.59) BS02 X8K 2.7.11.1 N/A Q9HBH9 N/A
    436005 8p9f:A (1.3) BS01 X9O ? N/A O60885 38291964
    436006 8p9g:A (1.1) BS01 X9K ? N/A O60885 38291964
    436007 8p9h:A (1.19) BS01 X9C ? N/A O60885 38291964
    436008 8p9i:A (1.23) BS01 X8T ? N/A O60885 38291964
    436009 8p9i:B (1.23) BS01 X8T ? N/A O60885 38291964
    436010 8p9i:B (1.23) BS02 X8T ? N/A O60885 38291964
    436011 8p9j:A (1.42) BS01 X8O ? N/A O60885 38291964
    436012 8p9k:A (1.25) BS01 X9U ? N/A O60885 38291964
    436013 8p9l:A (1.29) BS01 XA3 ? N/A O60885 38291964
    436014 8p9p:A (1.14) BS03 XB4 N/A N/A Q9XAY4 N/A
    436015 8p9q:A (1.08) BS03 XC6 N/A N/A Q9XAY4 N/A
    436016 8p9s:A (1.2) BS03 XCB N/A N/A Q9XAY4 N/A
    436017 8p9t:A (1.2) BS03 XCQ N/A N/A Q9XAY4 N/A
    436018 8p9u:A (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436019 8p9u:A (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436020 8p9u:B (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436021 8p9u:B (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436022 8p9u:C (2.0) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436023 8p9u:C (2.0) BS06 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436024 8p9u:D (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436025 8p9u:E (2.0) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436026 8p9u:F (2.0) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436027 8p9u:F (2.0) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436028 8p9v:A (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436029 8p9v:A (2.2) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436030 8p9v:B (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436031 8p9v:C (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436032 8p9v:D (2.2) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436033 8p9v:F (2.2) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436034 8p9v:F (2.2) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    436035 8p9w:A (2.9) BS02 XDO N/A N/A Q9PTN2 38982588
    436036 8p9x:A (2.15) BS02 FO6 N/A N/A Q9PTN2 38982588
    436037 8p9y:C (4.3) BS01 XIO ? GO:0005515 ... P0DTC2 37471688
    436038 8pa2:A (2.1) BS01 NAD N/A GO:0000166 ... Q5SLC4 N/A
    436039 8pa2:B (2.1) BS01 NAD N/A GO:0000166 ... Q5SLC4 N/A
    436040 8pa2:C (2.1) BS01 NAD N/A GO:0000166 ... Q5SLC4 N/A
    436041 8pa2:D (2.1) BS01 NAD N/A GO:0000166 ... Q5SLC4 N/A
    436042 8pa3:A (1.07) BS03 XNT N/A N/A Q9XAY4 N/A
    436043 8pa4:A (1.11) BS03 XN6 N/A N/A Q9XAY4 N/A
    436044 8pa5:A (1.1) BS03 XMZ N/A N/A Q9XAY4 N/A
    436045 8pa6:A (1.58) BS01 XKB 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    436046 8pa6:B (1.58) BS01 XKB 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    436047 8pa7:A (1.1) BS03 XMN N/A N/A Q9XAY4 N/A
    436048 8pa8:A (1.32) BS03 XLZ N/A N/A Q9XAY4 N/A
    436049 8pa9:A (1.5) BS01 XKF 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    436050 8paa:A (1.1) BS03 XO0 N/A N/A Q9XAY4 N/A
    436051 8pac:A (1.1) BS03 XNE N/A N/A Q9XAY4 N/A
    436052 8pad:A (1.1) BS03 XMU N/A N/A Q9XAY4 N/A
    436053 8paf:A (2.1) BS01 XKK 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    436054 8paf:B (2.1) BS01 XKK 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    436055 8pah:A (1.1) BS03 XM8 N/A N/A Q9XAY4 N/A
    436056 8pai:A (1.8) BS01 XKO 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 N/A
    436057 8pal:A (1.25) BS03 XM8 N/A N/A Q9XAY4 N/A
    436058 8pam:A (1.25) BS03 XZR N/A N/A Q9XAY4 N/A
    436059 8pan:A (1.25) BS03 XZL N/A N/A Q9XAY4 N/A
    436060 8pao:A (1.4) BS03 XZH N/A N/A Q9XAY4 N/A
    436061 8par:A (2.0) BS01 XON N/A N/A Q92918 N/A
    436062 8pas:A (2.7) BS01 XOH N/A N/A Q92918 N/A
    436063 8pas:B (2.7) BS01 XOH N/A N/A Q92918 N/A
    436064 8pau:A (2.8) BS01 XOR N/A N/A Q92918 N/A
    436065 8pau:B (2.8) BS01 XOR N/A N/A Q92918 N/A
    436066 8pav:A (1.9) BS01 XOZ N/A N/A Q13043 N/A
    436067 8pav:B (1.9) BS01 XOZ N/A N/A Q13043 N/A
    436068 8paw:A (2.14) BS01 ASP N/A N/A Q13043 N/A
    436069 8paw:A (2.14) BS02 XQL N/A N/A Q13043 N/A
    436070 8paw:B (2.14) BS01 XQL N/A N/A Q13043 N/A
    436071 8pb0:A (1.26) BS03 XQE N/A N/A Q9XAY4 N/A
    436072 8pb2:A (1.25) BS03 XQ5 N/A N/A Q9XAY4 N/A
    436073 8pb3:A (1.18) BS01 SAH 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436074 8pb3:A (1.18) BS02 XP6 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436075 8pb3:B (1.18) BS01 SAH 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436076 8pb3:B (1.18) BS02 XP6 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436077 8pb4:A (0.91) BS01 SAH 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436078 8pb4:A (0.91) BS02 XP6 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436079 8pb5:A (0.89) BS01 SFG 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436080 8pb5:A (0.89) BS02 XP6 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436081 8pb6:A (0.93) BS01 SAH 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436082 8pb6:A (0.93) BS02 XPN 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436083 8pb7:A (0.92) BS01 SFG 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436084 8pb7:A (0.92) BS02 XPN 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436085 8pb8:A (2.531) BS01 SAH 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436086 8pb8:B (2.531) BS01 SAH 2.1.1.- GO:0005634 ... P0DPA9 38548735
    436087 8pb9:A (3.3) BS01 ACP ? GO:0005524 ... G3XD64 38051770
    436088 8pb9:A (3.3) BS02 ACP ? GO:0005524 ... G3XD64 38051770
    436089 8pb9:B (3.3) BS01 ACP ? GO:0005524 ... G3XD64 38051770
    436090 8pb9:D (3.3) BS01 C2E ? GO:0005524 ... G3XCV0 38051770
    436091 8pb9:D (3.3) BS02 C2E ? GO:0005524 ... G3XCV0 38051770
    436092 8pbb:B (2.49) BS01 CLF 1.18.6.1 GO:0009399 ... D5ANJ9 38062208
    436093 8pbb:D (2.49) BS01 CLF 1.18.6.1 GO:0009399 ... D5ANJ9 38062208
    436094 8pbc:A (2.61) BS03 ATP ? GO:0000150 ... Q06609 37919288
    436095 8pbc:A (2.61) BS06 ATP ? GO:0000150 ... Q06609 37919288
    436096 8pbc:B (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436097 8pbc:B (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436098 8pbc:C (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436099 8pbc:C (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436100 8pbc:D (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436101 8pbc:D (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436102 8pbc:E (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436103 8pbc:E (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436104 8pbc:F (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436105 8pbc:F (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436106 8pbc:G (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436107 8pbc:G (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436108 8pbc:H (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436109 8pbc:H (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436110 8pbc:I (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436111 8pbc:I (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436112 8pbc:J (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436113 8pbc:J (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436114 8pbc:K (2.61) BS02 ATP ? GO:0000150 ... Q06609 37919288
    436115 8pbd:A (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436116 8pbd:A (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436117 8pbd:B (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    436118 8pbd:B (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    436119 8pbd:C (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    436120 8pbd:C (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    436121 8pbd:D (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436122 8pbd:D (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436123 8pbd:E (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    436124 8pbd:E (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    436125 8pbd:F (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    436126 8pbd:F (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    436127 8pbd:G (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    436128 8pbd:G (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    436129 8pbd:H (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    436130 8pbd:H (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    436131 8pbd:I (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    436132 8pbd:I (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    436133 8pbd:J (2.83) BS02 ATP ? GO:0000150 ... Q06609 37919288
    436134 8pbe:A (1.71) BS01 NCD 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436135 8pbf:A (1.14) BS01 Y58 ? GO:0030246 ... P17931 37878264
    436136 8pbg:A (1.46) BS01 FOT 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436137 8pbh:A (1.87) BS01 NCD 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436138 8pbi:A (1.5) BS01 FOT 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436139 8pbj:A (1.55) BS01 NCD 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436140 8pbk:A (1.69) BS01 FOT 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436141 8pbm:A (1.28) BS01 DOR 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436142 8pbn:A (1.71) BS01 FOT 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436143 8pbo:A (1.85) BS01 Y5I ? GO:0003677 ... P37231 38649351
    436144 8pbp:A (1.54) BS01 NCD 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436145 8pbp:A (1.54) BS02 DOR 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436146 8pbq:A (1.54) BS01 NCD 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436147 8pbt:A (1.43) BS01 DOR 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436148 8pbu:A (1.67) BS01 FOT 2.1.3.2
    3.5.1.2
    3.5.2.3
    6.3.4.16
    6.3.5.5    		 GO:0016787 ... P27708 37540500
    436149 8pbz:A (11.0) BS01 SIA ? N/A P22747 37939157
    436150 8pbz:D (11.0) BS01 SIA ? N/A P22747 37939157
    436151 8pc0:A (17.0) BS01 SIA ? N/A P22747 37939157
    436152 8pc2:A (2.8) BS01 XZW ? N/A P40337 37942685
    436153 8pc2:B (2.8) BS01 XZW ? N/A P40337 37942685
    436154 8pc2:G (2.8) BS01 XZW 5.2.1.8 GO:0003755 ... Q13451 37942685
    436155 8pc2:H (2.8) BS01 XZW 5.2.1.8 GO:0003755 ... Q13451 37942685
    436156 8pc3:A (1.1) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    436157 8pc3:A (1.1) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436158 8pc3:A (1.1) BS03 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    436159 8pc3:A (1.1) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436160 8pc4:A (2.85) BS03 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436161 8pc4:A (2.85) BS04 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436162 8pc4:A (2.85) BS05 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436163 8pc4:A (2.85) BS06 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436164 8pc4:A (2.85) BS07 HCZ N/A GO:0000139 ... Q6IQ20 N/A
    436165 8pc4:B (2.85) BS01 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436166 8pc4:B (2.85) BS02 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436167 8pc4:B (2.85) BS03 DXC N/A GO:0000139 ... Q6IQ20 N/A
    436168 8pc4:B (2.85) BS06 HCZ N/A GO:0000139 ... Q6IQ20 N/A
    436169 8pc7:A (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    436170 8pc7:B (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    436171 8pc7:C (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    436172 8pc7:D (2.4) BS01 ZK8 ? GO:0016298 ... A0A2K8JN75 37376994
    436173 8pc8:A (1.24) BS01 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    436174 8pc8:A (1.24) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436175 8pc8:A (1.24) BS03 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    436176 8pc8:A (1.24) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436177 8pcl:A (1.6) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436178 8pcm:A (1.84) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436179 8pcn:A (1.9) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436180 8pco:A (1.55) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436181 8pcp:A (1.76) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436182 8pcq:A (1.55) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436183 8pcr:A (1.7) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436184 8pcs:A (1.67) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436185 8pct:A (1.55) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436186 8pcu:A (1.5) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436187 8pcv:A (1.58) BS01 YCH N/A GO:0008800 ... A0A0H3H219 38969718
    436188 8pcx:A (1.14) BS01 LGU ? GO:0016829 ... A0A7I9C8Z1 N/A
    436189 8pcx:A (1.14) BS02 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436190 8pcx:A (1.14) BS03 MAV ? GO:0016829 ... A0A7I9C8Z1 N/A
    436191 8pcx:A (1.14) BS04 BEM ? GO:0016829 ... A0A7I9C8Z1 N/A
    436192 8pd1:A (1.87) BS01 YHU 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    436193 8pd1:B (1.87) BS01 YHU 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    436194 8pd6:A (1.3) BS01 YCB 2.3.2.27 N/A Q8NG06 38116426
    436195 8pd8:A (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    436196 8pd8:B (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    436197 8pd9:A (3.6) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    436198 8pdc:A (2.4) BS02 BEF N/A N/A G0SD89 38965424
    436199 8pdd:A (1.25) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    436200 8pdd:B (1.25) BS01 FAD 1.8.1.9 GO:0000166 ... Q962Y6 38238498
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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