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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435001 8ovd:H (2.3) BS07 HEM N/A GO:0008121 ... A0R052 38902248
    435002 8ovd:H (2.3) BS08 MQ9 N/A GO:0008121 ... A0R052 38902248
    435003 8ovd:H (2.3) BS09 MQ9 N/A GO:0008121 ... A0R052 38902248
    435004 8ovd:H (2.3) BS10 HEM N/A GO:0008121 ... A0R052 38902248
    435005 8ovd:H (2.3) BS11 MQ9 N/A GO:0008121 ... A0R052 38902248
    435006 8ovd:H (2.3) BS12 MQ9 N/A GO:0008121 ... A0R052 38902248
    435007 8ovd:H (2.3) BS13 9YF N/A GO:0008121 ... A0R052 38902248
    435008 8ovd:H (2.3) BS14 9XX N/A GO:0008121 ... A0R052 38902248
    435009 8ovd:I (2.3) BS01 WUO N/A GO:0016020 ... A0QVH4 38902248
    435010 8ovd:I (2.3) BS02 9YF N/A GO:0016020 ... A0QVH4 38902248
    435011 8ovd:K (2.3) BS01 MQ9 N/A GO:0004129 ... A0R056 38902248
    435012 8ovd:L (2.3) BS01 MQ9 N/A GO:0004129 ... A0A2U9PNL2 38902248
    435013 8ovd:L (2.3) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    435014 8ovd:L (2.3) BS03 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    435015 8ovd:M (2.3) BS02 FES N/A GO:0005886 ... A0R051 38902248
    435016 8ovd:M (2.3) BS03 IZL N/A GO:0005886 ... A0R051 38902248
    435017 8ovd:M (2.3) BS04 9YF N/A GO:0005886 ... A0R051 38902248
    435018 8ovd:M (2.3) BS05 MQ9 N/A GO:0005886 ... A0R051 38902248
    435019 8ovd:M (2.3) BS06 MQ9 N/A GO:0005886 ... A0R051 38902248
    435020 8ovd:M (2.3) BS07 9YF N/A GO:0005886 ... A0R051 38902248
    435021 8ovd:N (2.3) BS02 MQ9 N/A GO:0008121 ... A0R052 38902248
    435022 8ovd:N (2.3) BS03 IZL N/A GO:0008121 ... A0R052 38902248
    435023 8ovd:N (2.3) BS04 HEM N/A GO:0008121 ... A0R052 38902248
    435024 8ovd:N (2.3) BS05 MQ9 N/A GO:0008121 ... A0R052 38902248
    435025 8ovd:N (2.3) BS06 MQ9 N/A GO:0008121 ... A0R052 38902248
    435026 8ovd:N (2.3) BS07 HEM N/A GO:0008121 ... A0R052 38902248
    435027 8ovd:N (2.3) BS08 MQ9 N/A GO:0008121 ... A0R052 38902248
    435028 8ovd:N (2.3) BS09 MQ9 N/A GO:0008121 ... A0R052 38902248
    435029 8ovd:N (2.3) BS10 9YF N/A GO:0008121 ... A0R052 38902248
    435030 8ovd:N (2.3) BS11 9XX N/A GO:0008121 ... A0R052 38902248
    435031 8ovd:N (2.3) BS12 MQ9 N/A GO:0008121 ... A0R052 38902248
    435032 8ovd:N (2.3) BS13 9YF N/A GO:0008121 ... A0R052 38902248
    435033 8ovd:O (2.3) BS01 HEC N/A N/A A0R050 38902248
    435034 8ovd:O (2.3) BS02 HEC N/A N/A A0R050 38902248
    435035 8ovd:O (2.3) BS03 MQ9 N/A N/A A0R050 38902248
    435036 8ovd:O (2.3) BS04 WUO N/A N/A A0R050 38902248
    435037 8ovd:O (2.3) BS05 MQ9 N/A N/A A0R050 38902248
    435038 8ovd:P (2.3) BS01 WUO N/A GO:0016020 ... A0QVH4 38902248
    435039 8ovd:P (2.3) BS02 9YF N/A GO:0016020 ... A0QVH4 38902248
    435040 8ovd:R (2.3) BS01 MQ9 N/A GO:0004129 ... A0A2U9PNL2 38902248
    435041 8ovd:R (2.3) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    435042 8ovd:R (2.3) BS03 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    435043 8ovd:R (2.3) BS06 9XX N/A GO:0004129 ... A0A2U9PNL2 38902248
    435044 8ovd:T (2.3) BS01 WUO N/A GO:0004129 ... A0R056 38902248
    435045 8ovd:T (2.3) BS02 MQ9 N/A GO:0004129 ... A0R056 38902248
    435046 8ovd:W (2.3) BS01 HEC N/A N/A A0R562 38902248
    435047 8ovd:W (2.3) BS02 WUO N/A N/A A0R562 38902248
    435048 8ovd:W (2.3) BS03 9YF N/A N/A A0R562 38902248
    435049 8ovd:b (2.3) BS02 HEC N/A N/A A0R562 38902248
    435050 8ovd:b (2.3) BS03 WUO N/A N/A A0R562 38902248
    435051 8ovd:b (2.3) BS04 9YF N/A N/A A0R562 38902248
    435052 8ovf:A (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    435053 8ovf:B (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    435054 8ovf:C (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    435055 8ovf:D (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    435056 8ovf:E (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    435057 8ovf:F (7.23) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    435058 8ovh:A (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    435059 8ovh:B (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    435060 8ovh:C (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    435061 8ovh:D (2.171) BS01 PLP 2.5.1.47
    2.5.1.49    		 GO:0000103 ... P06106 37235813
    435062 8ovo:A (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    435063 8ovo:B (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    435064 8ovp:A (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    435065 8ovp:B (1.7) BS01 ASP ? GO:0006091 ... P37902
    P42212    		 N/A
    435066 8ovr:A (1.6) BS01 PIN ? GO:0005975 ... F8UNI4 N/A
    435067 8ovs:AAA (1.123) BS01 UDP N/A N/A N/A 38703997
    435068 8ovs:BBB (1.123) BS01 UDP N/A N/A N/A 38703997
    435069 8ovv:A (2.26) BS01 B12 ? GO:0016020 ... Q3SFD8 N/A
    435070 8ovz:A (2.206) BS01 W3N 2.7.10.1 GO:0004672 ... P08581 37343272
    435071 8ovz:B (2.206) BS01 W3N 2.7.10.1 GO:0004672 ... P08581 37343272
    435072 8ow2:A (2.57) BS01 QIH 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0016301 ... P42336 37225977
    435073 8ow3:A (2.27) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    435074 8ow5:A (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435075 8ow5:A (2.84) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435076 8ow5:B (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435077 8ow5:B (2.84) BS02 VEO 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435078 8ow5:B (2.84) BS03 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435079 8ow5:C (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435080 8ow5:D (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435081 8ow5:D (2.84) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435082 8ow6:A (1.2) BS01 CLA ? GO:0016168 ... Q9FEY4 N/A
    435083 8ow6:A (1.2) BS02 PID ? GO:0016168 ... Q9FEY4 N/A
    435084 8ow6:A (1.2) BS03 PID ? GO:0016168 ... Q9FEY4 N/A
    435085 8ow6:A (1.2) BS04 PID ? GO:0016168 ... Q9FEY4 N/A
    435086 8ow6:A (1.2) BS05 PID ? GO:0016168 ... Q9FEY4 N/A
    435087 8ow6:A (1.2) BS06 W4O ? GO:0016168 ... Q9FEY4 N/A
    435088 8ow6:A (1.2) BS07 PID ? GO:0016168 ... Q9FEY4 N/A
    435089 8ow6:A (1.2) BS08 PID ? GO:0016168 ... Q9FEY4 N/A
    435090 8ow6:B (1.2) BS01 PID N/A GO:0016168 ... Q9FEY4 N/A
    435091 8ow6:B (1.2) BS02 PID N/A GO:0016168 ... Q9FEY4 N/A
    435092 8ow6:B (1.2) BS03 PID N/A GO:0016168 ... Q9FEY4 N/A
    435093 8ow6:B (1.2) BS04 CLA N/A GO:0016168 ... Q9FEY4 N/A
    435094 8ow6:B (1.2) BS05 PID N/A GO:0016168 ... Q9FEY4 N/A
    435095 8ow6:B (1.2) BS06 PID N/A GO:0016168 ... Q9FEY4 N/A
    435096 8ow6:B (1.2) BS07 PID N/A GO:0016168 ... Q9FEY4 N/A
    435097 8ow6:B (1.2) BS08 PID N/A GO:0016168 ... Q9FEY4 N/A
    435098 8ow6:B (1.2) BS09 W4O N/A GO:0016168 ... Q9FEY4 N/A
    435099 8ow6:C (1.2) BS01 CLA ? GO:0016168 ... Q9FEY4 N/A
    435100 8ow6:C (1.2) BS02 PID ? GO:0016168 ... Q9FEY4 N/A
    435101 8ow6:C (1.2) BS03 PID ? GO:0016168 ... Q9FEY4 N/A
    435102 8ow6:C (1.2) BS04 PID ? GO:0016168 ... Q9FEY4 N/A
    435103 8ow6:C (1.2) BS05 PID ? GO:0016168 ... Q9FEY4 N/A
    435104 8ow6:C (1.2) BS06 W4O ? GO:0016168 ... Q9FEY4 N/A
    435105 8ow6:C (1.2) BS07 PID ? GO:0016168 ... Q9FEY4 N/A
    435106 8ow6:C (1.2) BS08 PID ? GO:0016168 ... Q9FEY4 N/A
    435107 8ow6:D (1.2) BS01 PID N/A GO:0016168 ... Q9FEY4 N/A
    435108 8ow6:D (1.2) BS02 PID N/A GO:0016168 ... Q9FEY4 N/A
    435109 8ow6:D (1.2) BS03 PID N/A GO:0016168 ... Q9FEY4 N/A
    435110 8ow6:D (1.2) BS04 PID N/A GO:0016168 ... Q9FEY4 N/A
    435111 8ow6:D (1.2) BS05 CLA N/A GO:0016168 ... Q9FEY4 N/A
    435112 8ow6:D (1.2) BS06 PID N/A GO:0016168 ... Q9FEY4 N/A
    435113 8ow6:D (1.2) BS07 PID N/A GO:0016168 ... Q9FEY4 N/A
    435114 8ow6:D (1.2) BS08 PID N/A GO:0016168 ... Q9FEY4 N/A
    435115 8ow6:D (1.2) BS09 PID N/A GO:0016168 ... Q9FEY4 N/A
    435116 8ow6:D (1.2) BS10 W4O N/A GO:0016168 ... Q9FEY4 N/A
    435117 8ow7:A (3.06) BS01 AMU ? N/A G8UQH1 37481208
    435118 8ow7:B (3.06) BS01 AMU ? N/A G8UQH1 37481208
    435119 8ow7:C (3.06) BS01 AMU ? N/A G8UQH1 37481208
    435120 8ow7:D (3.06) BS01 AMU ? N/A G8UQH1 37481208
    435121 8ow7:E (3.06) BS01 AMU ? N/A G8UQH1 37481208
    435122 8ow7:F (3.06) BS01 AMU ? N/A G8UQH1 37481208
    435123 8ow9:A (2.7) BS01 AMU ? N/A G8UQH9 37481208
    435124 8ow9:B (2.7) BS01 AMU ? N/A G8UQH9 37481208
    435125 8ow9:D (2.7) BS01 AMU ? N/A G8UQH9 37481208
    435126 8ow9:E (2.7) BS01 AMU ? N/A G8UQH9 37481208
    435127 8owa:A (2.85) BS01 VUK 7.2.2.10 GO:0000166 ... P04191 N/A
    435128 8owb:A (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435129 8owb:A (2.25) BS02 VE6 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435130 8owb:B (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435131 8owb:B (2.25) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435132 8owb:C (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435133 8owb:C (2.25) BS02 VE6 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435134 8owb:D (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435135 8owc:A (1.7) BS01 7MT N/A N/A P00698 38738452
    435136 8owf:A (1.3) BS01 GCS ? GO:0004553 ... F8UNI5 N/A
    435137 8owf:A (1.3) BS02 GCS ? GO:0004553 ... F8UNI5 N/A
    435138 8owf:A (1.3) BS03 GCS ? GO:0004553 ... F8UNI5 N/A
    435139 8owf:A (1.3) BS04 GCS ? GO:0004553 ... F8UNI5 N/A
    435140 8owg:A (2.631) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    435141 8owg:B (2.631) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    435142 8owg:C (2.631) BS01 W40 2.7.10.1 GO:0004672 ... P08581 37343272
    435143 8owl:A (3.02) BS01 VSR 7.2.2.10 GO:0000166 ... P04191 N/A
    435144 8owm:A (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    435145 8owm:A (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    435146 8owm:B (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    435147 8owm:B (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    435148 8owm:C (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    435149 8owm:C (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    435150 8owm:D (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    435151 8owm:D (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    435152 8owm:E (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    435153 8owm:E (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    435154 8owm:F (1.7) BS01 NAD 1.4.1.3 GO:0000325 ... Q38946 37478728
    435155 8owm:F (1.7) BS02 U5C 1.4.1.3 GO:0000325 ... Q38946 37478728
    435156 8owo:A (1.8) BS01 SAM 2.1.1.354 GO:0000978 ... Q9H7B4 38911161
    435157 8owp:A (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435158 8owp:A (1.993) BS02 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435159 8owp:A (1.993) BS03 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435160 8owp:B (1.993) BS01 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435161 8owp:B (1.993) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435162 8owp:C (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435163 8owp:C (1.993) BS02 W52 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435164 8owp:D (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435165 8owq:A (2.106) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435166 8owq:A (2.106) BS02 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435167 8owq:A (2.106) BS03 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435168 8owq:A (2.106) BS04 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435169 8owq:B (2.106) BS01 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435170 8owq:B (2.106) BS02 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435171 8owq:B (2.106) BS03 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435172 8owq:B (2.106) BS04 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435173 8owq:C (2.106) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435174 8owq:C (2.106) BS02 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435175 8owq:C (2.106) BS03 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435176 8owq:D (2.106) BS01 W4X 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435177 8owq:D (2.106) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435178 8owr:A (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435179 8owr:A (2.439) BS02 W5E 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435180 8owr:B (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435181 8owr:B (2.439) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435182 8owr:C (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435183 8owr:C (2.439) BS02 W5E 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435184 8owr:D (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    435185 8owx:A (2.601) BS01 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    435186 8owx:B (2.601) BS01 SAH 2.1.1.- GO:0005515 ... Q8TCB7 38918637
    435187 8owy:A (3.2) BS01 SAH 2.1.1.- N/A Q8TCB7 38918637
    435188 8owy:B (3.2) BS01 SAH 2.1.1.- N/A Q8TCB7 38918637
    435189 8owz:A (1.65) BS01 KZU 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37902787
    435190 8owz:A (1.65) BS02 BU3 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 37902787
    435191 8ox4:A (3.4) BS01 ACP 7.6.2.1 GO:0000166 ... O43520 37980352
    435192 8ox5:A (2.9) BS01 ADP 7.6.2.1 GO:0000166 ... O43520 37980352
    435193 8ox5:A (2.9) BS02 ALF 7.6.2.1 GO:0000166 ... O43520 37980352
    435194 8ox6:A (2.39) BS02 ALF 7.6.2.1 GO:0000166 ... O43520 37980352
    435195 8ox7:A (2.56) BS02 IP9 7.6.2.1 GO:0000166 ... O43520 37980352
    435196 8ox8:A (2.98) BS02 IP9 7.6.2.1 GO:0000166 ... O43520 37980352
    435197 8ox9:A (2.72) BS01 BEF 7.6.2.1 GO:0000166 ... O43520 37980352
    435198 8ox9:A (2.72) BS03 IP9 7.6.2.1 GO:0000166 ... O43520 37980352
    435199 8oxa:A (2.76) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    435200 8oxa:A (2.76) BS03 D39 7.6.2.1 GO:0000166 ... O43520 37980352
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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