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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    434801 8otz:WH (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    434802 8otz:WI (3.6) BS01 GTP 3.6.5.- GO:0000226 ... Q32KN8 37327785
    434803 8otz:WJ (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    434804 8otz:WK (3.6) BS01 GTP 3.6.5.- GO:0000226 ... Q32KN8 37327785
    434805 8otz:WL (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    434806 8otz:WM (3.6) BS01 GTP 3.6.5.- GO:0000226 ... Q32KN8 37327785
    434807 8otz:WN (3.6) BS01 GDP ? GO:0000226 ... Q3MHM5 37327785
    434808 8ou0:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q32KN8 37327785
    434809 8ou0:B (3.5) BS02 GDP ? GO:0000226 ... Q3MHM5 37327785
    434810 8ou2:A (1.6) BS01 W2W ? GO:0006357 ... Q12830 N/A
    434811 8ou2:B (1.6) BS01 W2W ? GO:0006357 ... Q12830 N/A
    434812 8ou2:B (1.6) BS02 W2W ? GO:0006357 ... Q12830 N/A
    434813 8ou3:A (1.47) BS02 EF2 ? GO:0046872 ... A4TVL0 37902300
    434814 8ou3:B (1.47) BS02 W1T ? GO:0046872 ... A4TVL0 37902300
    434815 8ou3:C (1.47) BS02 EF2 ? GO:0046872 ... A4TVL0 37902300
    434816 8ou4:A (2.25) BS02 W2F ? GO:0046872 ... A4TVL0 37902300
    434817 8ou4:B (2.25) BS02 W2F ? GO:0046872 ... A4TVL0 37902300
    434818 8ou5:A (2.3) BS02 W1X ? GO:0046872 ... A4TVL0 37902300
    434819 8ou5:B (2.3) BS02 W1X ? GO:0046872 ... A4TVL0 37902300
    434820 8ou6:A (1.84) BS02 W26 ? N/A A4TVL0 37902300
    434821 8ou6:B (1.84) BS02 W26 ? N/A A4TVL0 37902300
    434822 8ou7:A (1.7) BS02 W1F ? GO:0046872 ... A4TVL0 37902300
    434823 8ou7:B (1.7) BS02 W1F ? GO:0046872 ... A4TVL0 37902300
    434824 8ou7:C (1.7) BS02 W1F ? GO:0046872 ... A4TVL0 37902300
    434825 8ou8:A (2.05) BS01 W0U 6.1.1.3 GO:0000166 ... P0A8M3 37335076
    434826 8ou8:D (2.05) BS01 W0U 6.1.1.3 GO:0000166 ... P0A8M3 37335076
    434827 8ou9:A (1.75) BS02 W1B ? N/A A4TVL0 37902300
    434828 8ou9:B (1.75) BS02 W1B ? N/A A4TVL0 37902300
    434829 8ou9:C (1.75) BS02 W1B ? N/A A4TVL0 37902300
    434830 8oua:A (1.85) BS02 W0Z ? N/A A4TVL0 37902300
    434831 8oua:B (1.85) BS02 W0Z ? N/A A4TVL0 37902300
    434832 8oub:AAA (1.178) BS01 W1O 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    434833 8oud:A (2.31) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434834 8oud:A (2.31) BS02 Y01 ? GO:0001618 ... Q15758 38671230
    434835 8oud:B (2.31) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434836 8oud:C (2.31) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434837 8oud:C (2.31) BS02 Y01 ? GO:0001618 ... Q15758 38671230
    434838 8ouh:A (2.62) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434839 8ouh:B (2.62) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434840 8oui:B (3.39) BS01 ALA N/A GO:0015293 ... N/A 38671230
    434841 8oui:C (3.39) BS01 ALA N/A GO:0015293 ... N/A 38671230
    434842 8ouj:A (3.5) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434843 8ouj:B (3.5) BS01 ALA ? GO:0001618 ... Q15758 38671230
    434844 8ouk:A (1.8) BS01 GTP ? GO:0003924 ... A0A1Q9NLL0 N/A
    434845 8oul:A (3.1) BS01 GDP N/A GO:0003924 ... A0A1Q9NLL0 N/A
    434846 8oul:B (3.1) BS01 GDP N/A GO:0003924 ... A0A1Q9NLL0 N/A
    434847 8oul:C (3.1) BS01 GDP N/A GO:0003924 ... A0A1Q9NLL0 N/A
    434848 8oum:A (2.67) BS01 GTP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434849 8oum:B (2.67) BS01 GTP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434850 8oum:C (2.67) BS01 GTP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434851 8oum:D (2.67) BS01 GTP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434852 8oum:E (2.67) BS01 GTP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434853 8oun:A (1.653) BS01 GDP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434854 8oun:B (1.653) BS01 GDP ? GO:0003924 ... A0A8J7ZFD1 N/A
    434855 8ouo:A (3.0) BS01 Q7G ? GO:0005245 ... Q8NHX9 38815576
    434856 8ouo:A (3.0) BS02 W4E ? GO:0005245 ... Q8NHX9 38815576
    434857 8ouo:A (3.0) BS03 Y01 ? GO:0005245 ... Q8NHX9 38815576
    434858 8ouo:A (3.0) BS04 Y01 ? GO:0005245 ... Q8NHX9 38815576
    434859 8ouo:A (3.0) BS05 Y01 ? GO:0005245 ... Q8NHX9 38815576
    434860 8ouo:B (3.0) BS01 Q7G ? GO:0005245 ... Q8NHX9 38815576
    434861 8ouo:B (3.0) BS02 Y01 ? GO:0005245 ... Q8NHX9 38815576
    434862 8ouo:B (3.0) BS03 Y01 ? GO:0005245 ... Q8NHX9 38815576
    434863 8ouo:B (3.0) BS04 Y01 ? GO:0005245 ... Q8NHX9 38815576
    434864 8ouo:B (3.0) BS05 Q7G ? GO:0005245 ... Q8NHX9 38815576
    434865 8oup:A (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    434866 8oup:B (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    434867 8oup:C (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    434868 8oup:D (1.7) BS01 HEM ? GO:0005344 ... Q3MQ26 37354606
    434869 8our:A (1.95) BS01 W38 2.7.11.25 GO:0004672 ... Q12852 37436942
    434870 8ous:A (2.2) BS01 W3I 2.7.11.25 GO:0004672 ... Q12852 37436942
    434871 8out:A (1.935) BS01 W3C 2.7.11.25 GO:0004672 ... Q12852 37436942
    434872 8ouu:A (1.77) BS01 W49 2.7.10.1 GO:0004672 ... P08581 37343272
    434873 8ouu:B (1.77) BS01 W49 2.7.10.1 GO:0004672 ... P08581 37343272
    434874 8ouv:A (1.783) BS01 W3R 2.7.10.1 GO:0004672 ... P08581 37343272
    434875 8ouv:B (1.783) BS01 W3R 2.7.10.1 GO:0004672 ... P08581 37343272
    434876 8ouw:3 (3.75) BS02 ANP 3.6.4.12 GO:0000727 ... Q9XVR7 37590372
    434877 8ouw:3 (3.75) BS03 ANP 3.6.4.12 GO:0000727 ... Q9XVR7 37590372
    434878 8ouw:4 (3.75) BS02 ANP 3.6.4.12 GO:0000727 ... Q95XQ8 37590372
    434879 8ouw:5 (3.75) BS02 ANP 3.6.4.12 GO:0000727 ... Q21902 37590372
    434880 8ouw:6 (3.75) BS03 ANP 3.6.4.12 GO:0000727 ... P34647 37590372
    434881 8ouw:7 (3.75) BS02 ANP 3.6.4.12 GO:0000070 ... O16297 37590372
    434882 8ouw:7 (3.75) BS03 ANP 3.6.4.12 GO:0000070 ... O16297 37590372
    434883 8ouy:B (3.4) BS01 ADP ? GO:0000400 ... O43502 37344587
    434884 8ouy:B (3.4) BS02 ATP ? GO:0000400 ... O43502 37344587
    434885 8ouy:C (3.4) BS01 ATP ? GO:0000400 ... O75771 37344587
    434886 8ouy:D (3.4) BS01 ATP ? GO:0000278 ... O43543 37344587
    434887 8ouz:B (2.2) BS01 ADP ? GO:0000400 ... O43502 37344587
    434888 8ouz:B (2.2) BS02 ATP ? GO:0000400 ... O43502 37344587
    434889 8ouz:C (2.2) BS01 ATP ? GO:0000400 ... O75771 37344587
    434890 8ouz:C (2.2) BS02 ATP ? GO:0000400 ... O75771 37344587
    434891 8ouz:D (2.2) BS01 ATP ? GO:0000278 ... O43543 37344587
    434892 8ov1:A (1.67) BS01 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    434893 8ov1:A (1.67) BS02 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    434894 8ov2:A (1.86) BS01 SGV 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    434895 8ov3:A (1.82) BS01 5ID 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    434896 8ov4:A (1.93) BS01 TO1 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    434897 8ov5:M (1.15) BS01 CLA ? GO:0016168 ... P80484 N/A
    434898 8ov5:M (1.15) BS02 CLA ? GO:0016168 ... P80484 N/A
    434899 8ov5:M (1.15) BS03 PID ? GO:0016168 ... P80484 N/A
    434900 8ov5:M (1.15) BS04 PID ? GO:0016168 ... P80484 N/A
    434901 8ov5:M (1.15) BS05 PID ? GO:0016168 ... P80484 N/A
    434902 8ov5:M (1.15) BS06 PID ? GO:0016168 ... P80484 N/A
    434903 8ov5:M (1.15) BS07 W4I ? GO:0016168 ... P80484 N/A
    434904 8ov5:M (1.15) BS08 PID ? GO:0016168 ... P80484 N/A
    434905 8ov5:M (1.15) BS09 PID ? GO:0016168 ... P80484 N/A
    434906 8ov5:M (1.15) BS10 PID ? GO:0016168 ... P80484 N/A
    434907 8ov5:M (1.15) BS11 PID ? GO:0016168 ... P80484 N/A
    434908 8ov5:M (1.15) BS12 W4I ? GO:0016168 ... P80484 N/A
    434909 8ov5:M (1.15) BS13 W4I ? GO:0016168 ... P80484 N/A
    434910 8ov5:N (1.15) BS01 PID ? GO:0016168 ... P80484 N/A
    434911 8ov5:N (1.15) BS02 CLA ? GO:0016168 ... P80484 N/A
    434912 8ov5:N (1.15) BS03 CLA ? GO:0016168 ... P80484 N/A
    434913 8ov5:N (1.15) BS04 PID ? GO:0016168 ... P80484 N/A
    434914 8ov5:N (1.15) BS05 PID ? GO:0016168 ... P80484 N/A
    434915 8ov5:N (1.15) BS06 PID ? GO:0016168 ... P80484 N/A
    434916 8ov5:N (1.15) BS07 PID ? GO:0016168 ... P80484 N/A
    434917 8ov5:N (1.15) BS08 W4I ? GO:0016168 ... P80484 N/A
    434918 8ov5:N (1.15) BS09 PID ? GO:0016168 ... P80484 N/A
    434919 8ov5:N (1.15) BS10 PID ? GO:0016168 ... P80484 N/A
    434920 8ov5:N (1.15) BS11 PID ? GO:0016168 ... P80484 N/A
    434921 8ov5:N (1.15) BS12 PID ? GO:0016168 ... P80484 N/A
    434922 8ov5:N (1.15) BS13 W4I ? GO:0016168 ... P80484 N/A
    434923 8ov5:N (1.15) BS14 W4I ? GO:0016168 ... P80484 N/A
    434924 8ov5:O (1.15) BS01 W4I ? GO:0016168 ... P80484 N/A
    434925 8ov5:O (1.15) BS02 CLA ? GO:0016168 ... P80484 N/A
    434926 8ov5:O (1.15) BS03 CLA ? GO:0016168 ... P80484 N/A
    434927 8ov5:O (1.15) BS04 PID ? GO:0016168 ... P80484 N/A
    434928 8ov5:O (1.15) BS05 PID ? GO:0016168 ... P80484 N/A
    434929 8ov5:O (1.15) BS06 PID ? GO:0016168 ... P80484 N/A
    434930 8ov5:O (1.15) BS07 PID ? GO:0016168 ... P80484 N/A
    434931 8ov5:O (1.15) BS08 W4I ? GO:0016168 ... P80484 N/A
    434932 8ov5:O (1.15) BS09 PID ? GO:0016168 ... P80484 N/A
    434933 8ov5:O (1.15) BS10 PID ? GO:0016168 ... P80484 N/A
    434934 8ov5:O (1.15) BS11 PID ? GO:0016168 ... P80484 N/A
    434935 8ov5:O (1.15) BS12 PID ? GO:0016168 ... P80484 N/A
    434936 8ov5:O (1.15) BS13 W4I ? GO:0016168 ... P80484 N/A
    434937 8ov6:B (3.77) BS02 U79 ? GO:0005515 ... Q9NXF7 38383787
    434938 8ov6:C (3.77) BS01 U79 ? N/A O60885 38383787
    434939 8ov7:A (1.95) BS01 W3W 2.7.10.1 GO:0004672 ... P08581 37343272
    434940 8ov8:A (1.9) BS01 NAP 1.3.1.74 GO:0016491 ... A0A8S0W5G6 N/A
    434941 8ov8:B (1.9) BS01 NAP 1.3.1.74 GO:0016491 ... A0A8S0W5G6 N/A
    434942 8ovc:C (2.8) BS01 HEC N/A N/A A0R050 38902248
    434943 8ovc:C (2.8) BS02 HEC N/A N/A A0R050 38902248
    434944 8ovc:C (2.8) BS03 MQ9 N/A N/A A0R050 38902248
    434945 8ovc:C (2.8) BS04 WUO N/A N/A A0R050 38902248
    434946 8ovc:G (2.8) BS02 9YF N/A GO:0005886 ... A0R051 38902248
    434947 8ovc:G (2.8) BS03 9YF N/A GO:0005886 ... A0R051 38902248
    434948 8ovc:G (2.8) BS04 FES N/A GO:0005886 ... A0R051 38902248
    434949 8ovc:H (2.8) BS03 9YF N/A GO:0008121 ... A0R052 38902248
    434950 8ovc:H (2.8) BS04 WUO N/A GO:0008121 ... A0R052 38902248
    434951 8ovc:H (2.8) BS05 MQ9 N/A GO:0008121 ... A0R052 38902248
    434952 8ovc:H (2.8) BS06 HEM N/A GO:0008121 ... A0R052 38902248
    434953 8ovc:H (2.8) BS07 MQ9 N/A GO:0008121 ... A0R052 38902248
    434954 8ovc:H (2.8) BS08 MQ9 N/A GO:0008121 ... A0R052 38902248
    434955 8ovc:H (2.8) BS09 HEM N/A GO:0008121 ... A0R052 38902248
    434956 8ovc:H (2.8) BS10 9XX N/A GO:0008121 ... A0R052 38902248
    434957 8ovc:H (2.8) BS11 9YF N/A GO:0008121 ... A0R052 38902248
    434958 8ovc:I (2.8) BS01 WUO N/A GO:0016020 ... A0QVH4 38902248
    434959 8ovc:K (2.8) BS02 MQ9 N/A GO:0004129 ... A0R056 38902248
    434960 8ovc:L (2.8) BS01 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    434961 8ovc:L (2.8) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    434962 8ovc:L (2.8) BS05 9XX N/A GO:0004129 ... A0A2U9PNL2 38902248
    434963 8ovc:M (2.8) BS02 FES N/A GO:0005886 ... A0R051 38902248
    434964 8ovc:M (2.8) BS03 9YF N/A GO:0005886 ... A0R051 38902248
    434965 8ovc:N (2.8) BS01 MQ9 N/A GO:0008121 ... A0R052 38902248
    434966 8ovc:N (2.8) BS02 MQ9 N/A GO:0008121 ... A0R052 38902248
    434967 8ovc:N (2.8) BS03 HEM N/A GO:0008121 ... A0R052 38902248
    434968 8ovc:N (2.8) BS04 MQ9 N/A GO:0008121 ... A0R052 38902248
    434969 8ovc:N (2.8) BS05 MQ9 N/A GO:0008121 ... A0R052 38902248
    434970 8ovc:N (2.8) BS06 HEM N/A GO:0008121 ... A0R052 38902248
    434971 8ovc:N (2.8) BS07 9YF N/A GO:0008121 ... A0R052 38902248
    434972 8ovc:O (2.8) BS01 HEC N/A N/A A0R050 38902248
    434973 8ovc:O (2.8) BS02 HEC N/A N/A A0R050 38902248
    434974 8ovc:O (2.8) BS03 MQ9 N/A N/A A0R050 38902248
    434975 8ovc:O (2.8) BS04 WUO N/A N/A A0R050 38902248
    434976 8ovc:O (2.8) BS05 MQ9 N/A N/A A0R050 38902248
    434977 8ovc:P (2.8) BS01 WUO N/A GO:0016020 ... A0QVH4 38902248
    434978 8ovc:R (2.8) BS01 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    434979 8ovc:R (2.8) BS02 HEA N/A GO:0004129 ... A0A2U9PNL2 38902248
    434980 8ovc:T (2.8) BS02 MQ9 N/A GO:0004129 ... A0R056 38902248
    434981 8ovc:W (2.8) BS01 WUO N/A N/A A0R562 38902248
    434982 8ovc:W (2.8) BS02 9YF N/A N/A A0R562 38902248
    434983 8ovc:b (2.8) BS01 WUO N/A N/A A0R562 38902248
    434984 8ovc:b (2.8) BS02 9YF N/A N/A A0R562 38902248
    434985 8ovd:C (2.3) BS01 HEC N/A N/A A0R050 38902248
    434986 8ovd:C (2.3) BS02 HEC N/A N/A A0R050 38902248
    434987 8ovd:C (2.3) BS03 MQ9 N/A N/A A0R050 38902248
    434988 8ovd:C (2.3) BS04 WUO N/A N/A A0R050 38902248
    434989 8ovd:C (2.3) BS05 MQ9 N/A N/A A0R050 38902248
    434990 8ovd:G (2.3) BS02 9YF N/A GO:0005886 ... A0R051 38902248
    434991 8ovd:G (2.3) BS03 MQ9 N/A GO:0005886 ... A0R051 38902248
    434992 8ovd:G (2.3) BS04 FES N/A GO:0005886 ... A0R051 38902248
    434993 8ovd:G (2.3) BS05 IZL N/A GO:0005886 ... A0R051 38902248
    434994 8ovd:G (2.3) BS06 9YF N/A GO:0005886 ... A0R051 38902248
    434995 8ovd:G (2.3) BS07 MQ9 N/A GO:0005886 ... A0R051 38902248
    434996 8ovd:H (2.3) BS02 9YF N/A GO:0008121 ... A0R052 38902248
    434997 8ovd:H (2.3) BS03 MQ9 N/A GO:0008121 ... A0R052 38902248
    434998 8ovd:H (2.3) BS04 MQ9 N/A GO:0008121 ... A0R052 38902248
    434999 8ovd:H (2.3) BS05 WUO N/A GO:0008121 ... A0R052 38902248
    435000 8ovd:H (2.3) BS06 IZL N/A GO:0008121 ... A0R052 38902248
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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