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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    433801 8olf:A (1.45) BS02 VS9 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433802 8olh:A (1.23) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    433803 8olh:B (1.23) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    433804 8oli:A (1.4) BS02 VRI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433805 8olk:A (1.27) BS02 VQH 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433806 8oll:A (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433807 8oll:B (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433808 8oll:C (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433809 8oll:D (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433810 8oll:E (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433811 8oll:F (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433812 8oll:G (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433813 8oll:H (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433814 8oll:I (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433815 8oll:J (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433816 8oll:K (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433817 8oll:L (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433818 8oll:M (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433819 8oll:N (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433820 8oll:O (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433821 8oll:P (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433822 8oll:Q (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433823 8oll:R (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433824 8oll:S (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433825 8oll:T (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433826 8oll:U (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433827 8oll:V (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433828 8oll:W (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433829 8oll:X (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433830 8oll:Y (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433831 8oll:Z (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433832 8oll:a (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433833 8oll:b (2.7) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    433834 8olm:A (1.5) BS02 VSM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433835 8olp:A (1.27) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    433836 8olp:B (1.27) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    433837 8olr:H (2.8) BS01 VSZ 3.4.25.1 GO:0004298 ... P25043 38029352
    433838 8olr:K (2.8) BS02 VSZ 3.4.25.1 GO:0004298 ... P30656 38029352
    433839 8olr:N (2.8) BS02 VSZ 3.4.25.1 GO:0000502 ... P38624 38029352
    433840 8olr:V (2.8) BS01 VSZ 3.4.25.1 GO:0004298 ... P25043 38029352
    433841 8olr:Y (2.8) BS02 VSZ 3.4.25.1 GO:0004298 ... P30656 38029352
    433842 8olr:b (2.8) BS01 VSZ 3.4.25.1 GO:0000502 ... P38624 38029352
    433843 8olt:B (2.84) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 37531432
    433844 8olt:B (2.84) BS02 HQH 7.1.1.2 GO:0003954 ... Q9DC70 37531432
    433845 8olt:D (2.84) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 37531432
    433846 8olt:E (2.84) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 37531432
    433847 8olt:F (2.84) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 37531432
    433848 8olt:F (2.84) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 37531432
    433849 8olt:G (2.84) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 37531432
    433850 8olt:G (2.84) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 37531432
    433851 8olt:G (2.84) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 37531432
    433852 8olt:I (2.84) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 37531432
    433853 8olt:I (2.84) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 37531432
    433854 8olt:O (2.84) BS01 GTP ? GO:0005739 ... Q99LC3 37531432
    433855 8olt:P (2.84) BS01 NDP ? GO:0003954 ... Q9DC69 37531432
    433856 8olt:T (2.84) BS01 EHZ ? GO:0005654 ... Q9CR21 37531432
    433857 8olt:W (2.84) BS01 EHZ ? GO:0003674 ... Q9CQZ5 37531432
    433858 8olt:n (2.84) BS01 EHZ ? GO:0005739 ... Q9CQJ8 37531432
    433859 8olu:K (2.59) BS01 VYW ? GO:0000502 ... A0A640KTY7 37506194
    433860 8olu:L (2.59) BS01 VYW 3.4.25.1 GO:0000502 ... A0A640KW57 37506194
    433861 8olu:Y (2.59) BS01 VYW ? GO:0000502 ... A0A640KTY7 37506194
    433862 8olu:Z (2.59) BS01 VYW 3.4.25.1 GO:0000502 ... A0A640KW57 37506194
    433863 8olx:A (3.1) BS03 ADP ? GO:0000287 ... P43246 N/A
    433864 8om1:B (2.39) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 37531432
    433865 8om1:D (2.39) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 37531432
    433866 8om1:E (2.39) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 37531432
    433867 8om1:F (2.39) BS01 SF4 7.1.1.2 GO:0005515 ... Q91YT0 37531432
    433868 8om1:F (2.39) BS02 FMN 7.1.1.2 GO:0005515 ... Q91YT0 37531432
    433869 8om1:G (2.39) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 37531432
    433870 8om1:G (2.39) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 37531432
    433871 8om1:G (2.39) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 37531432
    433872 8om1:I (2.39) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 37531432
    433873 8om1:I (2.39) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 37531432
    433874 8om1:O (2.39) BS01 DGT ? GO:0005739 ... Q99LC3 37531432
    433875 8om1:P (2.39) BS01 NDP ? GO:0003954 ... Q9DC69 37531432
    433876 8om1:U (2.39) BS01 EHZ ? GO:0005654 ... Q9CR21 37531432
    433877 8om1:W (2.39) BS01 EHZ ? GO:0003674 ... Q9CQZ5 37531432
    433878 8om1:n (2.39) BS01 EHZ ? GO:0005739 ... Q9CQJ8 37531432
    433879 8om2:W (2.57) BS02 ATP ? GO:0003735 ... Q01163 38199006
    433880 8om2:c (2.57) BS02 SF4 2.1.1.- GO:0003735 ... P36056 38199006
    433881 8om3:W (2.87) BS02 ATP ? GO:0003735 ... Q01163 38199006
    433882 8om4:W (2.32) BS02 ATP ? GO:0003735 ... Q01163 38199006
    433883 8om5:A (3.52) BS01 ADP ? GO:0000287 ... P43246 N/A
    433884 8om5:B (3.52) BS01 ADP ? GO:0003677 ... P20585 N/A
    433885 8om7:A (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    433886 8om7:B (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    433887 8om7:C (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    433888 8om7:D (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    433889 8om7:E (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    433890 8om7:F (3.74) BS01 ADP 3.4.21.53 GO:0004176 ... P36776 38688959
    433891 8om8:AAA (1.08) BS01 VSU 3.2.1.17 GO:0003796 ... P00698 37195003
    433892 8om8:AAA (1.08) BS02 VTZ 3.2.1.17 GO:0003796 ... P00698 37195003
    433893 8om9:A (3.32) BS01 ADP ? GO:0000287 ... P43246 N/A
    433894 8om9:B (3.32) BS03 ADP ? GO:0003677 ... P20585 N/A
    433895 8oma:A (3.29) BS03 ATP ? GO:0000287 ... P43246 N/A
    433896 8oma:A (3.29) BS04 ATP ? GO:0000287 ... P43246 N/A
    433897 8oma:B (3.29) BS01 ATP ? GO:0003677 ... P20585 N/A
    433898 8oma:B (3.29) BS02 ATP ? GO:0003677 ... P20585 N/A
    433899 8omb:A (1.35) BS02 VRN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433900 8omc:A (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    433901 8omc:B (1.5) BS01 HEM 1.11.1.-
    4.98.1.1    		 GO:0004601 ... A0A7U9DT46 N/A
    433902 8omd:A (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433903 8omd:A (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433904 8omd:B (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433905 8omd:B (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433906 8omd:C (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433907 8omd:C (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433908 8omd:D (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P97328 37712434
    433909 8ome:A (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433910 8ome:A (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433911 8ome:B (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433912 8ome:B (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433913 8ome:C (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433914 8ome:C (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433915 8ome:D (2.0) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433916 8ome:D (2.0) BS02 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433917 8omf:A (2.14) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433918 8omf:B (2.14) BS01 VTJ 2.7.1.3 GO:0004454 ... P50053 37712434
    433919 8omh:A (1.45) BS02 VS9 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433920 8omi:A (1.77) BS01 ATP 2.7.-.- GO:0000828 ... C4M387 37843983
    433921 8omj:A (1.978) BS01 VTM N/A GO:0004454 ... P50053 39179180
    433922 8omj:B (1.978) BS01 VTM N/A GO:0004454 ... P50053 39179180
    433923 8omk:A (2.48) BS01 F1X 2.7.1.3 GO:0004454 ... P50053 39179180
    433924 8omk:A (2.48) BS02 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    433925 8omk:B (2.48) BS01 ADP 2.7.1.3 GO:0004454 ... P50053 39179180
    433926 8omm:A (2.15) BS01 HT9 4.99.1.9 GO:0004325 ... A0A3T2BSC5 37743577
    433927 8omn:A (1.4) BS02 A1H69 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433928 8omo:A (3.43) BS01 ATP ? GO:0000287 ... P43246 N/A
    433929 8omo:A (3.43) BS03 ATP ? GO:0000287 ... P43246 N/A
    433930 8omo:B (3.43) BS01 ATP ? GO:0003677 ... P20585 N/A
    433931 8omo:B (3.43) BS02 ATP ? GO:0003677 ... P20585 N/A
    433932 8omp:A (1.41) BS02 VQW 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    433933 8omq:A (3.11) BS01 ATP ? GO:0000287 ... P43246 N/A
    433934 8omq:A (3.11) BS02 ATP ? GO:0000287 ... P43246 N/A
    433935 8omq:B (3.11) BS01 ATP ? GO:0003677 ... P20585 N/A
    433936 8omq:B (3.11) BS03 ATP ? GO:0003677 ... P20585 N/A
    433937 8omr:A (3.3) BS03 9DG 2.4.2.64 GO:0005515 ... Q9BXR0 38181786
    433938 8oms:AAA (1.1) BS01 VTU 3.2.1.17 GO:0003796 ... P00698 37195003
    433939 8omt:AAA (1.097) BS01 VTU 3.2.1.17 GO:0003796 ... P00698 37195003
    433940 8omt:AAA (1.097) BS02 VTZ 3.2.1.17 GO:0003796 ... P00698 37195003
    433941 8omx:X (1.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433942 8omx:X (1.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433943 8omx:X (1.5) BS03 NFS 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433944 8omy:X (1.37) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433945 8omy:X (1.37) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433946 8omz:A (3.5) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    433947 8omz:A (3.5) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    433948 8omz:A (3.5) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    433949 8omz:C (3.5) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    433950 8omz:C (3.5) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    433951 8on0:X (1.29) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433952 8on0:X (1.29) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433953 8on1:X (1.37) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433954 8on1:X (1.37) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433955 8on2:X (1.58) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433956 8on2:X (1.58) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433957 8on3:X (1.74) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433958 8on3:X (1.74) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433959 8on3:X (1.74) BS03 VV2 1.2.7.4 GO:0003824 ... Q9F8A8 37279092
    433960 8one:A (2.3) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    433961 8one:A (2.3) BS05 UPG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    433962 8onh:A (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433963 8onh:A (2.59) BS02 MAN ? N/A B3GVS7 37656766
    433964 8onh:A (2.59) BS03 GLC ? N/A B3GVS7 37656766
    433965 8onh:B (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433966 8onh:B (2.59) BS02 MAN ? N/A B3GVS7 37656766
    433967 8onh:B (2.59) BS03 MAN ? N/A B3GVS7 37656766
    433968 8onh:B (2.59) BS04 GLC ? N/A B3GVS7 37656766
    433969 8onh:C (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433970 8onh:C (2.59) BS02 GLC ? N/A B3GVS7 37656766
    433971 8onh:D (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433972 8onh:E (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433973 8onh:F (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433974 8onh:G (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433975 8onh:G (2.59) BS02 MAN ? N/A B3GVS7 37656766
    433976 8onh:G (2.59) BS03 MAN ? N/A B3GVS7 37656766
    433977 8onh:H (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433978 8onh:I (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433979 8onh:I (2.59) BS02 GLC ? N/A B3GVS7 37656766
    433980 8onh:J (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433981 8onh:J (2.59) BS02 MAN ? N/A B3GVS7 37656766
    433982 8onh:J (2.59) BS03 GLC ? N/A B3GVS7 37656766
    433983 8onh:K (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433984 8onh:K (2.59) BS02 GLC ? N/A B3GVS7 37656766
    433985 8onh:L (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433986 8onh:L (2.59) BS02 GLC ? N/A B3GVS7 37656766
    433987 8onh:M (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433988 8onh:N (2.59) BS01 BMA ? N/A B3GVS7 37656766
    433989 8onh:N (2.59) BS02 MAN ? N/A B3GVS7 37656766
    433990 8onh:N (2.59) BS03 GLC ? N/A B3GVS7 37656766
    433991 8onh:O (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433992 8onh:P (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433993 8onh:Q (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433994 8onh:R (2.59) BS01 GLC ? N/A B3GVS7 37656766
    433995 8onj:A (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    433996 8onj:B (1.8) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    433997 8onl:A (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    433998 8onl:B (1.9) BS01 PLP ? GO:0003824 ... D5EHC5 37548495
    433999 8onm:A (1.85) BS01 PMP ? GO:0003824 ... D5EHC5 N/A
    434000 8onm:B (1.85) BS01 PW0 ? GO:0003824 ... D5EHC5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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