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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    432801 8k8s:A (3.06) BS04 HF4 N/A GO:0003677 ... A0A7H0DN44 38579705
    432802 8k8u:A (3.05) BS05 CTP N/A GO:0003677 ... A0A7H0DN44 38579705
    432803 8k8y:A (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432804 8k8y:B (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432805 8k8y:C (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432806 8k8y:D (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432807 8k8y:E (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432808 8k8y:F (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432809 8k8y:G (2.54) BS01 TS6 N/A N/A C9DRU9 N/A
    432810 8k8z:A (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    432811 8k8z:B (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    432812 8k8z:C (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    432813 8k8z:D (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    432814 8k8z:E (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    432815 8k8z:F (2.83) BS01 TS6 N/A N/A C9DRU9 N/A
    432816 8k90:B (3.43) BS01 TS6 N/A N/A C9DRU9 N/A
    432817 8k90:C (3.43) BS01 TS6 N/A N/A C9DRU9 N/A
    432818 8k90:D (3.43) BS01 TS6 N/A N/A C9DRU9 N/A
    432819 8k91:A (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432820 8k91:B (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432821 8k91:C (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432822 8k91:D (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432823 8k91:E (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432824 8k91:F (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432825 8k91:G (3.03) BS01 TS6 N/A N/A C9DRU9 N/A
    432826 8k92:A (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    432827 8k92:B (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    432828 8k92:C (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    432829 8k92:D (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    432830 8k92:E (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    432831 8k92:F (3.31) BS01 TS6 N/A N/A C9DRU9 N/A
    432832 8k93:B (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    432833 8k93:C (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    432834 8k93:D (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    432835 8k93:E (3.23) BS01 TS6 N/A N/A C9DRU9 N/A
    432836 8k94:B (3.4) BS01 TS6 N/A N/A C9DRU9 N/A
    432837 8k94:C (3.4) BS01 TS6 N/A N/A C9DRU9 N/A
    432838 8k94:D (3.4) BS01 TS6 N/A N/A C9DRU9 N/A
    432839 8k95:A (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    432840 8k95:B (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    432841 8k95:C (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    432842 8k95:D (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    432843 8k95:E (3.05) BS01 TS6 N/A N/A C9DRU9 N/A
    432844 8k96:A (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432845 8k96:B (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432846 8k96:C (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432847 8k96:D (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432848 8k96:E (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432849 8k96:F (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432850 8k96:G (2.89) BS01 BO2 N/A N/A C9DRU9 N/A
    432851 8k97:A (2.73) BS01 BO2 N/A N/A C9DRU9 N/A
    432852 8k97:B (2.73) BS01 BO2 N/A N/A C9DRU9 N/A
    432853 8k97:C (2.73) BS01 BO2 N/A N/A C9DRU9 N/A
    432854 8k97:D (2.73) BS01 BO2 N/A N/A C9DRU9 N/A
    432855 8k97:E (2.73) BS01 BO2 N/A N/A C9DRU9 N/A
    432856 8k97:F (2.73) BS01 BO2 N/A N/A C9DRU9 N/A
    432857 8k9e:A (3.33) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    432858 8k9e:A (3.33) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    432859 8k9e:A (3.33) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    432860 8k9e:A (3.33) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    432861 8k9e:A (3.33) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    432862 8k9e:A (3.33) BS06 EL6 ? GO:0016020 ... A9WEV2 38299372
    432863 8k9e:B (3.33) BS01 HEC ? N/A A9WEV3 38299372
    432864 8k9e:B (3.33) BS02 HEC ? N/A A9WEV3 38299372
    432865 8k9e:B (3.33) BS03 SF4 ? N/A A9WEV3 38299372
    432866 8k9e:B (3.33) BS04 SF4 ? N/A A9WEV3 38299372
    432867 8k9e:B (3.33) BS05 SF4 ? N/A A9WEV3 38299372
    432868 8k9e:B (3.33) BS06 F3S ? N/A A9WEV3 38299372
    432869 8k9e:C (3.33) BS01 JLQ ? GO:0005886 ... A9WEV4 38299372
    432870 8k9e:C (3.33) BS02 JM9 ? GO:0005886 ... A9WEV4 38299372
    432871 8k9e:D (3.33) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    432872 8k9e:E (3.33) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    432873 8k9e:E (3.33) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    432874 8k9e:F (3.33) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    432875 8k9e:F (3.33) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    432876 8k9e:F (3.33) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    432877 8k9f:A (2.9) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    432878 8k9f:A (2.9) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    432879 8k9f:A (2.9) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    432880 8k9f:A (2.9) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    432881 8k9f:A (2.9) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    432882 8k9f:B (2.9) BS01 HEC ? N/A A9WEV3 38299372
    432883 8k9f:B (2.9) BS02 HEC ? N/A A9WEV3 38299372
    432884 8k9f:B (2.9) BS03 SF4 ? N/A A9WEV3 38299372
    432885 8k9f:B (2.9) BS04 SF4 ? N/A A9WEV3 38299372
    432886 8k9f:B (2.9) BS05 SF4 ? N/A A9WEV3 38299372
    432887 8k9f:B (2.9) BS06 F3S ? N/A A9WEV3 38299372
    432888 8k9f:C (2.9) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    432889 8k9f:C (2.9) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    432890 8k9f:C (2.9) BS03 JL3 ? GO:0005886 ... A9WEV4 38299372
    432891 8k9f:C (2.9) BS04 JM9 ? GO:0005886 ... A9WEV4 38299372
    432892 8k9f:D (2.9) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    432893 8k9f:E (2.9) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    432894 8k9f:E (2.9) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    432895 8k9f:E (2.9) BS03 HEC ? GO:0009055 ... A9WEV6 38299372
    432896 8k9f:F (2.9) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    432897 8k9f:F (2.9) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    432898 8k9f:F (2.9) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    432899 8k9l:R (3.05) BS02 VV9 ? GO:0042597 ... P0ABE7
    P35372    		 38740791
    432900 8k9q:A (2.84) BS01 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    432901 8k9q:A (2.84) BS02 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    432902 8k9q:A (2.84) BS03 Y01 3.1.-.- GO:0005783 ... G0S652 38167496
    432903 8k9q:A (2.84) BS04 D39 3.1.-.- GO:0005783 ... G0S652 38167496
    432904 8k9q:A (2.84) BS05 D39 3.1.-.- GO:0005783 ... G0S652 38167496
    432905 8k9r:A (2.68) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    432906 8k9r:A (2.68) BS03 05E 3.1.-.- GO:0005783 ... G0S652 38167496
    432907 8k9r:A (2.68) BS04 PA1 3.1.-.- GO:0005783 ... G0S652 38167496
    432908 8k9r:A (2.68) BS05 L9H 3.1.-.- GO:0005783 ... G0S652 38167496
    432909 8k9r:A (2.68) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    432910 8k9r:A (2.68) BS07 80Y 3.1.-.- GO:0005783 ... G0S652 38167496
    432911 8k9s:A (2.35) BS01 LYS N/A N/A A0A024X378 38890421
    432912 8k9s:A (2.35) BS02 JRU N/A N/A A0A024X378 38890421
    432913 8k9s:B (2.35) BS01 LYS N/A N/A A0A024X378 38890421
    432914 8k9s:B (2.35) BS02 JRU N/A N/A A0A024X378 38890421
    432915 8k9t:A (2.66) BS02 MAN 3.1.-.- GO:0005783 ... G0S652 38167496
    432916 8k9t:A (2.66) BS03 05E 3.1.-.- GO:0005783 ... G0S652 38167496
    432917 8k9t:A (2.66) BS04 PA1 3.1.-.- GO:0005783 ... G0S652 38167496
    432918 8k9t:A (2.66) BS05 LYI 3.1.-.- GO:0005783 ... G0S652 38167496
    432919 8k9t:A (2.66) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    432920 8k9t:A (2.66) BS07 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    432921 8k9t:A (2.66) BS08 80Y 3.1.-.- GO:0005783 ... G0S652 38167496
    432922 8k9u:A (2.83) BS01 LYS N/A N/A A0A024X378 38890421
    432923 8k9u:A (2.83) BS02 JSL N/A N/A A0A024X378 38890421
    432924 8k9u:B (2.83) BS01 LYS N/A N/A A0A024X378 38890421
    432925 8k9u:B (2.83) BS02 JSL N/A N/A A0A024X378 38890421
    432926 8k9v:A (1.92) BS01 LYS N/A N/A A0A024X378 38890421
    432927 8k9v:A (1.92) BS02 JT4 N/A N/A A0A024X378 38890421
    432928 8k9v:B (1.92) BS01 LYS N/A N/A A0A024X378 38890421
    432929 8k9v:B (1.92) BS02 JT4 N/A N/A A0A024X378 38890421
    432930 8k9w:A (2.3) BS01 JTR N/A N/A A0A024X378 38890421
    432931 8k9w:B (2.3) BS01 JTR N/A N/A A0A024X378 38890421
    432932 8k9x:A (2.35) BS01 JUA N/A N/A A0A024X378 38890421
    432933 8k9x:B (2.35) BS01 JUA N/A N/A A0A024X378 38890421
    432934 8k9y:A (1.82) BS01 A3P 2.8.2.24 GO:0005737 ... Q9C9D0 37586213
    432935 8k9y:B (1.82) BS01 A3P 2.8.2.24 GO:0005737 ... Q9C9D0 37586213
    432936 8ka0:A (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    432937 8ka0:C (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    432938 8ka0:E (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    432939 8ka0:G (2.35) BS01 NAD N/A N/A A0A2S3R7M0 39043696
    432940 8ka3:A (3.0) BS04 3DR 3.1.11.2 GO:0003677 ... P45951 38503293
    432941 8ka4:B (2.3) BS01 DG 3.1.11.2 GO:0003677 ... P45951 38503293
    432942 8ka4:C (2.3) BS01 DG 3.1.11.2 GO:0003677 ... P45951 38503293
    432943 8ka5:A (2.8) BS04 3DR 3.1.11.2 GO:0003677 ... P45951 38503293
    432944 8kab:h (3.3) BS02 GNP N/A GO:0003924 ... A0QVY1 39029461
    432945 8kae:R (3.18) BS01 YUX ? GO:0001782 ... Q8IVW8 38123825
    432946 8kao:C (2.55) BS01 NAD N/A N/A A0A0E3K1C8 N/A
    432947 8kao:C (2.55) BS02 69O N/A N/A A0A0E3K1C8 N/A
    432948 8kaq:A (2.13) BS01 BGC N/A N/A B1W1N0 N/A
    432949 8kaq:A (2.13) BS02 BGC N/A N/A B1W1N0 N/A
    432950 8kaq:A (2.13) BS03 BGC N/A N/A B1W1N0 N/A
    432951 8kaq:A (2.13) BS04 GLC N/A N/A B1W1N0 N/A
    432952 8kaq:B (2.13) BS01 GLC N/A N/A B1W1N0 N/A
    432953 8kaq:B (2.13) BS02 BGC N/A N/A B1W1N0 N/A
    432954 8kaq:C (2.13) BS01 BGC N/A N/A B1W1N0 N/A
    432955 8kaq:C (2.13) BS02 BGC N/A N/A B1W1N0 N/A
    432956 8kaq:C (2.13) BS03 BGC N/A N/A B1W1N0 N/A
    432957 8kaq:C (2.13) BS04 GLC N/A N/A B1W1N0 N/A
    432958 8kaq:D (2.13) BS01 BGC N/A N/A B1W1N0 N/A
    432959 8kar:A (1.73) BS01 AKG N/A N/A A0A0E3K1C8 N/A
    432960 8kar:A (1.73) BS02 NAD N/A N/A A0A0E3K1C8 N/A
    432961 8kar:B (1.73) BS01 AKG N/A N/A A0A0E3K1C8 N/A
    432962 8kar:B (1.73) BS02 NAD N/A N/A A0A0E3K1C8 N/A
    432963 8kar:C (1.73) BS01 AKG N/A N/A A0A0E3K1C8 N/A
    432964 8kar:C (1.73) BS02 NAD N/A N/A A0A0E3K1C8 N/A
    432965 8kb7:A (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    432966 8kb7:A (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    432967 8kb7:B (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    432968 8kb7:B (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    432969 8kb7:C (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    432970 8kb7:C (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    432971 8kb7:D (2.8) BS01 UDP N/A N/A Q8NAT1 N/A
    432972 8kb7:D (2.8) BS02 MAN N/A N/A Q8NAT1 N/A
    432973 8kb8:C (2.49) BS02 GTP N/A N/A P51149 N/A
    432974 8kb8:D (2.49) BS02 GTP N/A N/A P51149 N/A
    432975 8kbe:A (2.16) BS01 OJC N/A N/A P0DW58 N/A
    432976 8kbe:A (2.16) BS02 OJC N/A N/A P0DW58 N/A
    432977 8kbe:B (2.16) BS01 OJC N/A N/A P0DW58 N/A
    432978 8kbe:B (2.16) BS02 OJC N/A N/A P0DW58 N/A
    432979 8kbf:A (2.31) BS02 OJC N/A N/A P0DW58 N/A
    432980 8kbf:A (2.31) BS03 OJC N/A N/A P0DW58 N/A
    432981 8kbf:B (2.31) BS02 OJC N/A N/A P0DW58 N/A
    432982 8kbf:B (2.31) BS03 OJC N/A N/A P0DW58 N/A
    432983 8kbg:D (2.37) BS01 1SY N/A N/A P0DW58 N/A
    432984 8kbg:D (2.37) BS02 1SY N/A N/A P0DW58 N/A
    432985 8kbg:E (2.37) BS01 1SY N/A N/A P0DW58 N/A
    432986 8kbg:E (2.37) BS02 1SY N/A N/A P0DW58 N/A
    432987 8kbg:F (2.37) BS01 1SY N/A N/A P0DW58 N/A
    432988 8kbg:F (2.37) BS02 1SY N/A N/A P0DW58 N/A
    432989 8kbg:G (2.37) BS01 1SY N/A N/A P0DW58 N/A
    432990 8kbg:G (2.37) BS02 1SY N/A N/A P0DW58 N/A
    432991 8kbg:H (2.37) BS01 1SY N/A N/A P0DW58 N/A
    432992 8kbg:H (2.37) BS02 1SY N/A N/A P0DW58 N/A
    432993 8kbg:I (2.37) BS01 1SY N/A N/A P0DW58 N/A
    432994 8kbg:I (2.37) BS02 1SY N/A N/A P0DW58 N/A
    432995 8kbh:A (1.54) BS02 1SY N/A N/A P0DW58 N/A
    432996 8kbh:A (1.54) BS03 1SY N/A N/A P0DW58 N/A
    432997 8kbh:B (1.54) BS01 1SY N/A N/A P0DW58 N/A
    432998 8kbh:B (1.54) BS02 1SY N/A N/A P0DW58 N/A
    432999 8kbh:C (1.54) BS01 1SY N/A N/A P0DW58 N/A
    433000 8kbh:D (1.54) BS02 1SY N/A N/A P0DW58 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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