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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    431601 8jze:A (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431602 8jze:A (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431603 8jze:A (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431604 8jze:A (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431605 8jze:A (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431606 8jze:A (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431607 8jze:A (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431608 8jze:A (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431609 8jze:A (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431610 8jze:A (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431611 8jze:B (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431612 8jze:B (2.99) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431613 8jze:B (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431614 8jze:B (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431615 8jze:B (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431616 8jze:B (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    431617 8jze:B (2.99) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431618 8jze:B (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431619 8jze:B (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431620 8jze:B (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431621 8jze:B (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431622 8jze:B (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431623 8jze:B (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431624 8jze:B (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431625 8jze:B (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431626 8jze:B (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431627 8jze:B (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431628 8jze:D (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    431629 8jze:D (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    431630 8jze:D (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431631 8jze:D (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    431632 8jze:D (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    431633 8jze:D (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    431634 8jze:D (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431635 8jze:D (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431636 8jze:D (2.99) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    431637 8jze:D (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431638 8jze:D (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431639 8jze:D (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431640 8jze:D (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431641 8jze:D (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431642 8jze:D (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431643 8jze:F (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    431644 8jze:F (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431645 8jze:F (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    431646 8jze:F (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    431647 8jze:F (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    431648 8jze:F (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431649 8jze:F (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431650 8jze:F (2.99) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    431651 8jze:F (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431652 8jze:F (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431653 8jze:F (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431654 8jze:F (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431655 8jze:F (2.99) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    431656 8jze:F (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431657 8jze:G (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431658 8jze:G (2.99) BS02 UIX N/A GO:0009765 ... N/A 38319970
    431659 8jze:G (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431660 8jze:G (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431661 8jze:G (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    431662 8jze:G (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    431663 8jze:G (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431664 8jze:G (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431665 8jze:G (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431666 8jze:G (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431667 8jze:G (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431668 8jze:G (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431669 8jze:G (2.99) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    431670 8jze:G (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431671 8jze:G (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431672 8jze:G (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431673 8jze:G (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431674 8jze:H (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    431675 8jze:H (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    431676 8jze:H (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431677 8jze:H (2.99) BS04 CLA N/A GO:0009765 ... N/A 38319970
    431678 8jze:H (2.99) BS05 CLA N/A GO:0009765 ... N/A 38319970
    431679 8jze:H (2.99) BS06 KC1 N/A GO:0009765 ... N/A 38319970
    431680 8jze:H (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431681 8jze:H (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431682 8jze:H (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431683 8jze:H (2.99) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    431684 8jze:H (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431685 8jze:H (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431686 8jze:I (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431687 8jze:I (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431688 8jze:I (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431689 8jze:I (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    431690 8jze:I (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431691 8jze:I (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431692 8jze:I (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431693 8jze:I (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431694 8jze:I (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431695 8jze:I (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431696 8jze:I (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431697 8jze:I (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431698 8jze:I (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431699 8jze:I (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431700 8jze:I (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431701 8jze:I (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431702 8jze:I (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431703 8jze:I (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431704 8jze:J (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431705 8jze:J (2.99) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431706 8jze:J (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431707 8jze:J (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431708 8jze:J (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431709 8jze:J (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    431710 8jze:J (2.99) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431711 8jze:J (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431712 8jze:J (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431713 8jze:J (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431714 8jze:J (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431715 8jze:J (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431716 8jze:J (2.99) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    431717 8jze:J (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431718 8jze:J (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431719 8jze:K (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431720 8jze:K (2.99) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431721 8jze:K (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431722 8jze:K (2.99) BS04 UIX N/A GO:0009765 ... N/A 38319970
    431723 8jze:K (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431724 8jze:K (2.99) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431725 8jze:K (2.99) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431726 8jze:K (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431727 8jze:K (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431728 8jze:K (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431729 8jze:K (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431730 8jze:K (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431731 8jze:K (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431732 8jze:K (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431733 8jze:K (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431734 8jze:K (2.99) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    431735 8jze:K (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431736 8jze:K (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431737 8jze:K (2.99) BS19 CLA N/A GO:0009765 ... N/A 38319970
    431738 8jze:L (2.99) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431739 8jze:L (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431740 8jze:L (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431741 8jze:L (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431742 8jze:L (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431743 8jze:L (2.99) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431744 8jze:L (2.99) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431745 8jze:L (2.99) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    431746 8jze:L (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431747 8jze:L (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431748 8jze:L (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431749 8jze:L (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431750 8jze:L (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431751 8jze:L (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431752 8jze:L (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431753 8jze:L (2.99) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    431754 8jze:L (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431755 8jze:L (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431756 8jze:L (2.99) BS19 CLA N/A GO:0009765 ... N/A 38319970
    431757 8jze:M (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    431758 8jze:M (2.99) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431759 8jze:M (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431760 8jze:M (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431761 8jze:M (2.99) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431762 8jze:M (2.99) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431763 8jze:M (2.99) BS07 KC1 N/A GO:0009765 ... N/A 38319970
    431764 8jze:M (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431765 8jze:M (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431766 8jze:M (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431767 8jze:M (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431768 8jze:M (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431769 8jze:M (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431770 8jze:M (2.99) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431771 8jze:M (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431772 8jze:M (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431773 8jze:M (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431774 8jze:M (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431775 8jze:N (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431776 8jze:N (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    431777 8jze:N (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    431778 8jze:N (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431779 8jze:N (2.99) BS05 CLA N/A GO:0009765 ... N/A 38319970
    431780 8jze:N (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431781 8jze:N (2.99) BS07 KC1 N/A GO:0009765 ... N/A 38319970
    431782 8jze:N (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431783 8jze:N (2.99) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    431784 8jze:N (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431785 8jze:N (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431786 8jze:N (2.99) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    431787 8jze:O (2.99) BS01 PID N/A GO:0009765 ... N/A 38319970
    431788 8jze:O (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    431789 8jze:O (2.99) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431790 8jze:O (2.99) BS04 PID N/A GO:0009765 ... N/A 38319970
    431791 8jze:O (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    431792 8jze:O (2.99) BS06 UIX N/A GO:0009765 ... N/A 38319970
    431793 8jze:O (2.99) BS07 PID N/A GO:0009765 ... N/A 38319970
    431794 8jze:O (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431795 8jze:O (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431796 8jze:O (2.99) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    431797 8jze:O (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431798 8jze:O (2.99) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    431799 8jze:O (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431800 8jze:O (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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