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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    431001 8jw0:B (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431002 8jw0:B (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431003 8jw0:B (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    431004 8jw0:B (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431005 8jw0:B (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431006 8jw0:B (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431007 8jw0:B (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431008 8jw0:B (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431009 8jw0:B (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431010 8jw0:B (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431011 8jw0:B (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431012 8jw0:B (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431013 8jw0:B (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431014 8jw0:B (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431015 8jw0:B (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431016 8jw0:B (2.9) BS18 DD6 N/A GO:0009765 ... N/A 38319970
    431017 8jw0:B (2.9) BS19 UIX N/A GO:0009765 ... N/A 38319970
    431018 8jw0:B (2.9) BS20 CLA N/A GO:0009765 ... N/A 38319970
    431019 8jw0:B (2.9) BS21 CLA N/A GO:0009765 ... N/A 38319970
    431020 8jw0:C (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    431021 8jw0:C (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431022 8jw0:C (2.9) BS03 PID N/A GO:0009765 ... N/A 38319970
    431023 8jw0:C (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    431024 8jw0:C (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    431025 8jw0:C (2.9) BS06 PID N/A GO:0009765 ... N/A 38319970
    431026 8jw0:C (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431027 8jw0:C (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431028 8jw0:C (2.9) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    431029 8jw0:C (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431030 8jw0:C (2.9) BS11 KC1 N/A GO:0009765 ... N/A 38319970
    431031 8jw0:C (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431032 8jw0:C (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431033 8jw0:C (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431034 8jw0:C (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431035 8jw0:D (2.9) BS01 KC1 ? GO:0009765 ... Q38689 38319970
    431036 8jw0:D (2.9) BS02 PID ? GO:0009765 ... Q38689 38319970
    431037 8jw0:D (2.9) BS03 PID ? GO:0009765 ... Q38689 38319970
    431038 8jw0:D (2.9) BS04 DD6 ? GO:0009765 ... Q38689 38319970
    431039 8jw0:D (2.9) BS05 PID ? GO:0009765 ... Q38689 38319970
    431040 8jw0:D (2.9) BS06 PID ? GO:0009765 ... Q38689 38319970
    431041 8jw0:D (2.9) BS07 PID ? GO:0009765 ... Q38689 38319970
    431042 8jw0:D (2.9) BS08 CLA ? GO:0009765 ... Q38689 38319970
    431043 8jw0:D (2.9) BS09 CLA ? GO:0009765 ... Q38689 38319970
    431044 8jw0:D (2.9) BS10 KC1 ? GO:0009765 ... Q38689 38319970
    431045 8jw0:D (2.9) BS11 CLA ? GO:0009765 ... Q38689 38319970
    431046 8jw0:D (2.9) BS12 CLA ? GO:0009765 ... Q38689 38319970
    431047 8jw0:D (2.9) BS13 CLA ? GO:0009765 ... Q38689 38319970
    431048 8jw0:D (2.9) BS14 CLA ? GO:0009765 ... Q38689 38319970
    431049 8jw0:D (2.9) BS15 KC1 ? GO:0009765 ... Q38689 38319970
    431050 8jw0:D (2.9) BS16 CLA ? GO:0009765 ... Q38689 38319970
    431051 8jw0:E (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431052 8jw0:E (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    431053 8jw0:E (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431054 8jw0:E (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431055 8jw0:E (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    431056 8jw0:E (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431057 8jw0:E (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431058 8jw0:E (2.9) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    431059 8jw0:E (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431060 8jw0:E (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431061 8jw0:E (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431062 8jw0:E (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431063 8jw0:E (2.9) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    431064 8jw0:E (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431065 8jw0:E (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431066 8jw0:E (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431067 8jw0:F (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431068 8jw0:F (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431069 8jw0:F (2.9) BS03 PID N/A GO:0009765 ... N/A 38319970
    431070 8jw0:F (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431071 8jw0:F (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    431072 8jw0:F (2.9) BS06 UIX N/A GO:0009765 ... N/A 38319970
    431073 8jw0:F (2.9) BS07 PID N/A GO:0009765 ... N/A 38319970
    431074 8jw0:F (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431075 8jw0:F (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431076 8jw0:F (2.9) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    431077 8jw0:F (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431078 8jw0:F (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431079 8jw0:F (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431080 8jw0:F (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431081 8jw0:F (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    431082 8jw0:F (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431083 8jw0:F (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431084 8jw0:F (2.9) BS18 KC1 N/A GO:0009765 ... N/A 38319970
    431085 8jw0:G (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431086 8jw0:G (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431087 8jw0:G (2.9) BS03 CLA N/A GO:0009765 ... N/A 38319970
    431088 8jw0:G (2.9) BS04 CLA N/A GO:0009765 ... N/A 38319970
    431089 8jw0:G (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431090 8jw0:G (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431091 8jw0:G (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431092 8jw0:G (2.9) BS08 DD6 N/A GO:0009765 ... N/A 38319970
    431093 8jw0:G (2.9) BS09 PID N/A GO:0009765 ... N/A 38319970
    431094 8jw0:G (2.9) BS10 PID N/A GO:0009765 ... N/A 38319970
    431095 8jw0:G (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431096 8jw0:G (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431097 8jw0:G (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431098 8jw0:G (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431099 8jw0:G (2.9) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    431100 8jw0:G (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431101 8jw0:G (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431102 8jw0:G (2.9) BS18 KC1 N/A GO:0009765 ... N/A 38319970
    431103 8jw0:G (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    431104 8jw0:H (2.9) BS01 PID N/A GO:0009765 ... N/A 38319970
    431105 8jw0:H (2.9) BS02 PID N/A GO:0009765 ... N/A 38319970
    431106 8jw0:H (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431107 8jw0:H (2.9) BS04 PID N/A GO:0009765 ... N/A 38319970
    431108 8jw0:H (2.9) BS05 PID N/A GO:0009765 ... N/A 38319970
    431109 8jw0:H (2.9) BS06 PID N/A GO:0009765 ... N/A 38319970
    431110 8jw0:H (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431111 8jw0:H (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431112 8jw0:H (2.9) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    431113 8jw0:H (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431114 8jw0:H (2.9) BS11 KC1 N/A GO:0009765 ... N/A 38319970
    431115 8jw0:H (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431116 8jw0:H (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431117 8jw0:H (2.9) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431118 8jw0:H (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431119 8jw0:I (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431120 8jw0:I (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431121 8jw0:I (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431122 8jw0:I (2.9) BS04 CLA N/A GO:0009765 ... N/A 38319970
    431123 8jw0:I (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431124 8jw0:I (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431125 8jw0:I (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431126 8jw0:I (2.9) BS08 DD6 N/A GO:0009765 ... N/A 38319970
    431127 8jw0:I (2.9) BS09 DD6 N/A GO:0009765 ... N/A 38319970
    431128 8jw0:I (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431129 8jw0:I (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431130 8jw0:I (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431131 8jw0:I (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431132 8jw0:I (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431133 8jw0:I (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431134 8jw0:I (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431135 8jw0:I (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431136 8jw0:I (2.9) BS18 KC1 N/A GO:0009765 ... N/A 38319970
    431137 8jw0:I (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    431138 8jw0:I (2.9) BS20 CLA N/A GO:0009765 ... N/A 38319970
    431139 8jw0:I (2.9) BS21 DD6 N/A GO:0009765 ... N/A 38319970
    431140 8jw0:J (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431141 8jw0:J (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431142 8jw0:J (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431143 8jw0:J (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431144 8jw0:J (2.9) BS05 UIX N/A GO:0009765 ... N/A 38319970
    431145 8jw0:J (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431146 8jw0:J (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431147 8jw0:J (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431148 8jw0:J (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431149 8jw0:J (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431150 8jw0:J (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431151 8jw0:J (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431152 8jw0:J (2.9) BS13 KC1 N/A GO:0009765 ... N/A 38319970
    431153 8jw0:J (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431154 8jw0:K (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431155 8jw0:K (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431156 8jw0:K (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431157 8jw0:K (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431158 8jw0:K (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431159 8jw0:K (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431160 8jw0:K (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431161 8jw0:K (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431162 8jw0:K (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431163 8jw0:K (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431164 8jw0:K (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431165 8jw0:K (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431166 8jw0:K (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431167 8jw0:K (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431168 8jw0:K (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431169 8jw0:K (2.9) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    431170 8jw0:K (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431171 8jw0:K (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431172 8jw0:K (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    431173 8jw0:L (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431174 8jw0:L (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431175 8jw0:L (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431176 8jw0:L (2.9) BS04 UIX N/A GO:0009765 ... N/A 38319970
    431177 8jw0:L (2.9) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431178 8jw0:L (2.9) BS06 DD6 N/A GO:0009765 ... N/A 38319970
    431179 8jw0:L (2.9) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431180 8jw0:L (2.9) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    431181 8jw0:L (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431182 8jw0:L (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431183 8jw0:L (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431184 8jw0:L (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431185 8jw0:L (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431186 8jw0:L (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431187 8jw0:L (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431188 8jw0:L (2.9) BS16 KC1 N/A GO:0009765 ... N/A 38319970
    431189 8jw0:L (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431190 8jw0:L (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431191 8jw0:M (2.9) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431192 8jw0:M (2.9) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431193 8jw0:M (2.9) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431194 8jw0:M (2.9) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431195 8jw0:M (2.9) BS05 KC1 N/A GO:0009765 ... N/A 38319970
    431196 8jw0:M (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431197 8jw0:M (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431198 8jw0:M (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431199 8jw0:M (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431200 8jw0:M (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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