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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    430601 8jp3:A (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    430602 8jp3:A (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    430603 8jp3:A (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    430604 8jp3:A (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    430605 8jp3:A (2.73) BS08 CLA ? GO:0009416 ... B8BS67 39030906
    430606 8jp3:A (2.73) BS09 CLA ? GO:0009416 ... B8BS67 39030906
    430607 8jp3:A (2.73) BS10 KC2 ? GO:0009416 ... B8BS67 39030906
    430608 8jp3:A (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    430609 8jp3:A (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    430610 8jp3:A (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    430611 8jp3:A (2.73) BS14 CLA ? GO:0009416 ... B8BS67 39030906
    430612 8jp3:A (2.73) BS15 KC1 ? GO:0009416 ... B8BS67 39030906
    430613 8jp3:A (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    430614 8jp3:A (2.73) BS17 CLA ? GO:0009416 ... B8BS67 39030906
    430615 8jp3:A (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    430616 8jp3:A (2.73) BS19 A86 ? GO:0009416 ... B8BS67 39030906
    430617 8jp3:A (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    430618 8jp3:B (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    430619 8jp3:B (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    430620 8jp3:B (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    430621 8jp3:B (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    430622 8jp3:B (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    430623 8jp3:B (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    430624 8jp3:B (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    430625 8jp3:B (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    430626 8jp3:B (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    430627 8jp3:B (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    430628 8jp3:B (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    430629 8jp3:B (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    430630 8jp3:B (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    430631 8jp3:B (2.73) BS14 KC2 ? GO:0009416 ... B8BS67 39030906
    430632 8jp3:B (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    430633 8jp3:B (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    430634 8jp3:B (2.73) BS17 KC1 ? GO:0009416 ... B8BS67 39030906
    430635 8jp3:B (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    430636 8jp3:B (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    430637 8jp3:B (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    430638 8jp3:C (2.73) BS01 A86 ? GO:0009416 ... B8BS67 39030906
    430639 8jp3:C (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    430640 8jp3:C (2.73) BS03 A86 ? GO:0009416 ... B8BS67 39030906
    430641 8jp3:C (2.73) BS04 A86 ? GO:0009416 ... B8BS67 39030906
    430642 8jp3:C (2.73) BS05 A86 ? GO:0009416 ... B8BS67 39030906
    430643 8jp3:C (2.73) BS06 A86 ? GO:0009416 ... B8BS67 39030906
    430644 8jp3:C (2.73) BS07 A86 ? GO:0009416 ... B8BS67 39030906
    430645 8jp3:C (2.73) BS08 A86 ? GO:0009416 ... B8BS67 39030906
    430646 8jp3:C (2.73) BS09 A86 ? GO:0009416 ... B8BS67 39030906
    430647 8jp3:C (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    430648 8jp3:C (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    430649 8jp3:C (2.73) BS12 KC2 ? GO:0009416 ... B8BS67 39030906
    430650 8jp3:C (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    430651 8jp3:C (2.73) BS14 KC2 ? GO:0009416 ... B8BS67 39030906
    430652 8jp3:C (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    430653 8jp3:C (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    430654 8jp3:C (2.73) BS17 KC1 ? GO:0009416 ... B8BS67 39030906
    430655 8jp3:C (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    430656 8jp3:C (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    430657 8jp3:C (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    430658 8jpb:G (3.07) BS01 STU 2.7.11.15 GO:0001664 ... P21146 37532940
    430659 8jpb:G (3.07) BS02 SRW 2.7.11.15 GO:0001664 ... P21146 37532940
    430660 8jpb:Q (3.07) BS01 GDP ? GO:0001508 ... P50148 37532940
    430661 8jpb:Q (3.07) BS03 ALF ? GO:0001508 ... P50148 37532940
    430662 8jpb:R (3.07) BS02 SRW ? GO:0001659 ... P30989 37532940
    430663 8jpc:G (3.07) BS01 SRW 2.7.11.15 GO:0001664 ... P21146 37532940
    430664 8jpc:G (3.07) BS02 STU 2.7.11.15 GO:0001664 ... P21146 37532940
    430665 8jpc:Q (3.07) BS01 GDP ? GO:0001508 ... P50148 37532940
    430666 8jpc:Q (3.07) BS03 ALF ? GO:0001508 ... P50148 37532940
    430667 8jpc:R (3.07) BS02 SRW ? GO:0001659 ... P30989 37532940
    430668 8jpd:G (2.81) BS01 STU 2.7.11.15 GO:0001664 ... P21146 37532940
    430669 8jpe:Q (2.91) BS01 GDP ? GO:0001508 ... P50148 37532940
    430670 8jpe:Q (2.91) BS03 ALF ? GO:0001508 ... P50148 37532940
    430671 8jpf:R (3.02) BS02 SRW ? GO:0001659 ... P30989 37532940
    430672 8jpn:R (2.9) BS01 U9S 1.13.12.13 GO:0002001 ... P0ABE7
    Q9BXA5
    Q9GV45    		 38744983
    430673 8jpo:A (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    430674 8jpo:B (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    430675 8jpq:A (2.7) BS01 V3E 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37609788
    430676 8jpr:A (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    430677 8jpr:B (3.4) BS01 ATP ? GO:0005247 ... P51797 N/A
    430678 8jpw:A (2.66) BS01 FAD 1.4.3.11 GO:0016491 ... Q8L3C7 37487431
    430679 8jpw:A (2.66) BS02 AKG 1.4.3.11 GO:0016491 ... Q8L3C7 37487431
    430680 8jpz:A (2.08) BS01 FAD 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    430681 8jpz:A (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    430682 8jpz:B (2.08) BS01 FAD 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    430683 8jpz:B (2.08) BS02 OXY 1.1.3.4 GO:0000166 ... Q5Q041 N/A
    430684 8jq4:A (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430685 8jq4:A (1.61) BS04 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430686 8jq4:B (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430687 8jq4:C (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430688 8jq4:D (1.61) BS03 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430689 8jq4:D (1.61) BS04 RM4 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430690 8jq4:D (1.61) BS05 RAM 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430691 8jq5:A (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430692 8jq5:A (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430693 8jq5:B (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430694 8jq5:C (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430695 8jq5:C (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430696 8jq5:C (1.73) BS05 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430697 8jq5:D (1.73) BS03 PSJ 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430698 8jq5:D (1.73) BS04 PSV 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430699 8jq6:A (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430700 8jq6:A (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430701 8jq6:B (1.71) BS03 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430702 8jq6:C (1.71) BS03 AFD 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430703 8jq6:D (1.71) BS03 AFD 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430704 8jq6:D (1.71) BS04 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430705 8jq6:D (1.71) BS05 ALL 5.3.1.14 GO:0005737 ... A0A171J5T1 38430263
    430706 8jqo:A (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430707 8jqo:B (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430708 8jqo:C (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430709 8jqo:D (1.6) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430710 8jqp:A (1.65) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430711 8jqp:B (1.65) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430712 8jqq:A (2.06) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430713 8jqq:B (2.06) BS01 FAD N/A GO:0071949 ... N/A 38029967
    430714 8jqr:A (2.75) BS01 EZI N/A N/A Q8NER1 39107321
    430715 8jqr:A (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    430716 8jqr:B (2.75) BS01 EZI N/A N/A Q8NER1 39107321
    430717 8jqr:B (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    430718 8jqr:C (2.75) BS01 EZI N/A N/A Q8NER1 39107321
    430719 8jqr:C (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    430720 8jqr:D (2.75) BS01 EZI N/A N/A Q8NER1 39107321
    430721 8jqr:D (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    430722 8jqu:A (1.798) BS01 GNP N/A N/A A0A109NYM0 N/A
    430723 8jqz:A (3.05) BS01 GNP ? GO:0003924 ... U5NFV2 37705969
    430724 8jqz:B (3.05) BS01 GNP ? GO:0003924 ... U5NFV2 37705969
    430725 8jr0:1 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430726 8jr0:2 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430727 8jr0:4 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430728 8jr0:5 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430729 8jr0:5 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430730 8jr0:6 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430731 8jr0:6 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430732 8jr0:7 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430733 8jr0:7 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430734 8jr0:8 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430735 8jr0:8 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430736 8jr0:9 (2.8) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430737 8jr0:9 (2.8) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430738 8jr0:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    430739 8jr0:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    430740 8jr0:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    430741 8jr0:C (2.8) BS02 ADP 7.1.2.2 GO:0005524 ... P9WPU7 38961288
    430742 8jr0:D (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    430743 8jr0:F (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... P9WPU5 38961288
    430744 8jr0:a (2.8) BS01 UTI ? GO:0005886 ... P9WPV7 38961288
    430745 8jr1:1 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430746 8jr1:2 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430747 8jr1:4 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430748 8jr1:5 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430749 8jr1:5 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430750 8jr1:6 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430751 8jr1:7 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430752 8jr1:7 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430753 8jr1:8 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430754 8jr1:8 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430755 8jr1:9 (3.17) BS01 UTI ? GO:0005886 ... P9WPS1 38961288
    430756 8jr1:9 (3.17) BS02 UTI ? GO:0005886 ... P9WPS1 38961288
    430757 8jr1:a (3.17) BS01 UTI ? GO:0005886 ... P9WPV7 38961288
    430758 8jr9:A (2.57) BS01 KHF ? GO:0003924 ... P63092
    P63096    		 37524305
    430759 8jr9:R (2.57) BS01 KHF ? GO:0004888 ... Q03431 37524305
    430760 8jrd:A (1.83) BS01 COA N/A GO:0009813 ... P24826 38735137
    430761 8jrd:A (1.83) BS02 NAR N/A GO:0009813 ... P24826 38735137
    430762 8jrd:B (1.83) BS01 COA N/A GO:0009813 ... P24826 38735137
    430763 8jrd:B (1.83) BS02 NAR N/A GO:0009813 ... P24826 38735137
    430764 8jrl:A (2.07) BS01 HEM ? GO:0004497 ... A0A077KEB8 N/A
    430765 8jrl:A (2.07) BS02 V3X ? GO:0004497 ... A0A077KEB8 N/A
    430766 8jru:R (3.5) BS01 PIO ?
    3.4.21.69    		 GO:0004888 ... P03435
    P04070
    P30518
    P47871    		 37558880
    430767 8jrv:A (3.3) BS01 PIO ? GO:0000139 ... P49407 37558880
    430768 8js5:A (2.95) BS01 HEM N/A N/A P23222 N/A
    430769 8js5:B (2.95) BS01 HEM N/A N/A P23222 N/A
    430770 8js5:C (2.95) BS01 HEM N/A N/A P23222 N/A
    430771 8js5:D (2.95) BS01 HEM N/A N/A P23222 N/A
    430772 8js5:E (2.95) BS01 HEM N/A N/A P23222 N/A
    430773 8js5:F (2.95) BS01 HEM N/A N/A P23222 N/A
    430774 8js5:G (2.95) BS01 HEM N/A N/A P23222 N/A
    430775 8js5:H (2.95) BS01 HEM N/A N/A P23222 N/A
    430776 8js5:I (2.95) BS01 HEM N/A N/A P23222 N/A
    430777 8js5:J (2.95) BS01 HEM N/A N/A P23222 N/A
    430778 8js6:A (2.7) BS01 HEM N/A N/A P23222 N/A
    430779 8js6:B (2.7) BS01 HEM N/A N/A P23222 N/A
    430780 8js6:C (2.7) BS01 HEM N/A N/A P23222 N/A
    430781 8js6:D (2.7) BS01 HEM N/A N/A P23222 N/A
    430782 8js6:E (2.7) BS01 HEM N/A N/A P23222 N/A
    430783 8js6:F (2.7) BS01 HEM N/A N/A P23222 N/A
    430784 8js6:G (2.7) BS01 HEM N/A N/A P23222 N/A
    430785 8js6:H (2.7) BS01 HEM N/A N/A P23222 N/A
    430786 8js6:I (2.7) BS01 HEM N/A N/A P23222 N/A
    430787 8js6:J (2.7) BS01 HEM N/A N/A P23222 N/A
    430788 8js7:A (2.85) BS01 HEM N/A N/A P23222 N/A
    430789 8js7:B (2.85) BS01 HEM N/A N/A P23222 N/A
    430790 8js7:C (2.85) BS01 HEM N/A N/A P23222 N/A
    430791 8js7:D (2.85) BS01 HEM N/A N/A P23222 N/A
    430792 8js7:E (2.85) BS01 HEM N/A N/A P23222 N/A
    430793 8js7:F (2.85) BS01 HEM N/A N/A P23222 N/A
    430794 8js7:G (2.85) BS01 HEM N/A N/A P23222 N/A
    430795 8js7:H (2.85) BS01 HEM N/A N/A P23222 N/A
    430796 8js7:I (2.85) BS01 HEM N/A N/A P23222 N/A
    430797 8js7:J (2.85) BS01 HEM N/A N/A P23222 N/A
    430798 8js8:A (2.88) BS01 UKX ? GO:0005783 ... Q7L0J3 38637505
    430799 8js9:B (3.01) BS01 FUC ? GO:0005576 ... D2KCK3 38637505
    430800 8jsc:C (2.16) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 37739993
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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