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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    429801 8jeb:A (1.3) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    429802 8jeb:B (1.3) BS01 MAN ? GO:0046872 ... K1QRB6 37793172
    429803 8jeb:B (1.3) BS02 MAN ? GO:0046872 ... K1QRB6 37793172
    429804 8jee:A (2.96) BS02 U6X 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    429805 8jej:A (2.5) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    429806 8jej:A (2.5) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    429807 8jej:C (2.5) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    429808 8jej:C (2.5) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    429809 8jej:C (2.5) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    429810 8jej:C (2.5) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    429811 8jek:A (2.7) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    429812 8jek:A (2.7) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    429813 8jek:C (2.7) BS01 HEC ? GO:0005506 ... M1V1V5 N/A
    429814 8jek:C (2.7) BS02 HEC ? GO:0005506 ... M1V1V5 N/A
    429815 8jek:C (2.7) BS03 HEC ? GO:0005506 ... M1V1V5 N/A
    429816 8jek:C (2.7) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    429817 8jem:A (3.23) BS01 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429818 8jem:A (3.23) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429819 8jem:A (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429820 8jem:B (3.23) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429821 8jem:B (3.23) BS02 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429822 8jem:B (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429823 8jem:B (3.23) BS04 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429824 8jem:C (3.23) BS01 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429825 8jem:C (3.23) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429826 8jem:C (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429827 8jem:D (3.23) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429828 8jem:D (3.23) BS02 ASW 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429829 8jem:D (3.23) BS03 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429830 8jem:D (3.23) BS04 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429831 8jer:R (3.45) BS01 OJX ? GO:0001781 ... P08173
    Q8TDS4    		 38431681
    429832 8jes:A (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429833 8jes:A (3.42) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429834 8jes:B (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429835 8jes:C (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429836 8jes:C (3.42) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429837 8jes:D (3.42) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429838 8jev:A (3.06) BS01 CL N/A N/A P51791 39107281
    429839 8jev:A (3.06) BS02 CL N/A N/A P51791 39107281
    429840 8jev:B (3.06) BS01 CL N/A N/A P51791 39107281
    429841 8jev:B (3.06) BS02 CL N/A N/A P51791 39107281
    429842 8jew:A (2.49) BS01 ASC ? GO:0005515 ... Q9UHI7 N/A
    429843 8jew:A (2.49) BS02 LBN ? GO:0005515 ... Q9UHI7 N/A
    429844 8jew:A (2.49) BS03 AV0 ? GO:0005515 ... Q9UHI7 N/A
    429845 8jew:A (2.49) BS04 CLR ? GO:0005515 ... Q9UHI7 N/A
    429846 8jew:A (2.49) BS05 CLR ? GO:0005515 ... Q9UHI7 N/A
    429847 8jez:A (2.6) BS01 LBN N/A GO:0005515 ... Q9UHI7 N/A
    429848 8jez:A (2.6) BS02 AV0 N/A GO:0005515 ... Q9UHI7 N/A
    429849 8jez:A (2.6) BS03 CLR N/A GO:0005515 ... Q9UHI7 N/A
    429850 8jez:A (2.6) BS04 CLR N/A GO:0005515 ... Q9UHI7 N/A
    429851 8jf1:A (2.85) BS01 AV0 ? GO:0005515 ... Q9UHI7 N/A
    429852 8jf1:A (2.85) BS02 AV0 ? GO:0005515 ... Q9UHI7 N/A
    429853 8jf1:A (2.85) BS03 AV0 ? GO:0005515 ... Q9UHI7 N/A
    429854 8jf1:A (2.85) BS04 Y01 ? GO:0005515 ... Q9UHI7 N/A
    429855 8jf1:A (2.85) BS05 Y01 ? GO:0005515 ... Q9UHI7 N/A
    429856 8jf1:A (2.85) BS06 CLR ? GO:0005515 ... Q9UHI7 N/A
    429857 8jf2:A (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429858 8jf2:A (3.5) BS02 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429859 8jf2:B (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429860 8jf2:C (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429861 8jf2:D (3.5) BS01 PGT 2.3.1.- GO:0005886 ... Q5M4V4 38649359
    429862 8jf3:A (2.84648) BS01 C0N 2.7.10.2 GO:0004672 ... P12931 38248139
    429863 8jf3:B (2.84648) BS01 C0N 2.7.10.2 GO:0004672 ... P12931 38248139
    429864 8jf4:A (2.89288) BS01 C0N 2.7.11.1 GO:0000212 ... O14965 38248139
    429865 8jf5:A (3.2) BS01 FAD 1.14.99.66 N/A O60341 N/A
    429866 8jf5:A (3.2) BS02 UEU 1.14.99.66 N/A O60341 N/A
    429867 8jfa:A (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429868 8jfa:B (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429869 8jfa:C (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429870 8jfa:D (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429871 8jfa:E (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429872 8jfa:F (2.55) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429873 8jfb:A (2.65) BS01 U86 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429874 8jfb:A (2.65) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429875 8jfb:A (2.65) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429876 8jfb:A (2.65) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429877 8jfb:B (2.65) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429878 8jfb:B (2.65) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429879 8jfb:B (2.65) BS03 U86 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429880 8jfb:B (2.65) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429881 8jfc:A (2.3) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429882 8jfc:A (2.3) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429883 8jfc:A (2.3) BS03 U8I 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429884 8jfc:A (2.3) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429885 8jfc:B (2.3) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429886 8jfc:B (2.3) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429887 8jfc:B (2.3) BS03 U8I 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429888 8jfc:B (2.3) BS04 NDP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429889 8jfd:A (2.3) BS01 NDP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429890 8jfd:A (2.3) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429891 8jfd:A (2.3) BS03 U8Y 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429892 8jfd:A (2.3) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429893 8jfd:B (2.3) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429894 8jfd:B (2.3) BS02 NDP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429895 8jfd:B (2.3) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429896 8jfd:B (2.3) BS04 U8Y 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    429897 8jff:A (2.89) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    429898 8jff:A (2.89) BS02 EPE ? GO:0000976 ... A0A454A0X5 37805153
    429899 8jff:B (2.89) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    429900 8jfg:A (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429901 8jfg:A (2.83) BS02 UHC N/A GO:0004316 ... N/A 37779101
    429902 8jfg:B (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429903 8jfg:C (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429904 8jfg:D (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429905 8jfg:E (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429906 8jfg:F (2.83) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429907 8jfh:A (1.8) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429908 8jfh:B (1.8) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429909 8jfh:D (1.8) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429910 8jfh:D (1.8) BS02 PN7 N/A GO:0004316 ... N/A 37779101
    429911 8jfh:E (1.8) BS01 UHC ? GO:0000035 ... Q5EDC8 37779101
    429912 8jfi:A (2.38) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429913 8jfi:A (2.38) BS02 UHC N/A GO:0004316 ... N/A 37779101
    429914 8jfi:B (2.38) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429915 8jfi:C (2.38) BS02 NAP N/A GO:0004316 ... N/A 37779101
    429916 8jfi:D (2.38) BS02 NAP N/A GO:0004316 ... N/A 37779101
    429917 8jfi:E (2.38) BS02 NAP N/A GO:0004316 ... N/A 37779101
    429918 8jfi:F (2.38) BS01 NAP N/A GO:0004316 ... N/A 37779101
    429919 8jfk:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429920 8jfk:B (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429921 8jfk:B (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    429922 8jfk:E (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429923 8jfk:F (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429924 8jfk:F (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    429925 8jfk:I (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429926 8jfk:J (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429927 8jfk:J (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    429928 8jfk:M (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429929 8jfk:N (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429930 8jfk:N (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    429931 8jfl:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429932 8jfl:B (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429933 8jfl:B (2.9) BS02 ADP ? GO:0005515 ... Q93100 38548794
    429934 8jfl:B (2.9) BS03 FAR ? GO:0005515 ... Q93100 38548794
    429935 8jfl:E (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429936 8jfl:F (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429937 8jfl:F (2.9) BS02 ADP ? GO:0005515 ... Q93100 38548794
    429938 8jfl:F (2.9) BS03 FAR ? GO:0005515 ... Q93100 38548794
    429939 8jfl:I (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429940 8jfl:J (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429941 8jfl:J (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    429942 8jfl:J (2.9) BS03 ADP ? GO:0005515 ... Q93100 38548794
    429943 8jfl:M (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    429944 8jfl:N (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    429945 8jfl:N (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    429946 8jfl:N (2.9) BS03 ADP ? GO:0005515 ... Q93100 38548794
    429947 8jfm:A (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429948 8jfm:B (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429949 8jfm:C (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429950 8jfm:D (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429951 8jfm:E (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429952 8jfm:F (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429953 8jfm:G (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429954 8jfm:H (2.21) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429955 8jfn:A (2.41) BS01 NAD 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429956 8jfn:A (2.41) BS02 PSR 1.3.1.9 GO:0004318 ... A0A086RSH0 37779101
    429957 8jfn:B (2.41) BS01 PSR ? GO:0000035 ... Q5EDC8 37779101
    429958 8jfs:A (1.0) BS01 PO4 3.6.1.7 GO:0003998 ... Q9RVU3 37302289
    429959 8jfs:B (1.0) BS01 PO4 3.6.1.7 GO:0003998 ... Q9RVU3 37302289
    429960 8jfv:A (3.05) BS01 I4Y ? GO:0000976 ... A0A454A0X5 37805153
    429961 8jfv:A (3.05) BS02 EPE ? GO:0000976 ... A0A454A0X5 37805153
    429962 8jfv:B (3.05) BS01 EPE ? GO:0000976 ... A0A454A0X5 37805153
    429963 8jfz:A (3.5) BS01 CLR ? GO:0000166 ... Q4H132 37357620
    429964 8jfz:C (3.5) BS02 CLR ? GO:0000166 ... Q4H132 37357620
    429965 8jfz:E (3.5) BS01 CLR ? GO:0016020 ... Q70Q12 37357620
    429966 8jfz:G (3.5) BS01 CLR ? GO:0016020 ... Q70Q12 37357620
    429967 8jg2:A (1.64) BS01 COA 2.3.1.9 GO:0016746 ... A0A848BQU5 N/A
    429968 8jg2:B (1.64) BS01 COA 2.3.1.9 GO:0016746 ... A0A848BQU5 N/A
    429969 8jg7:A (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    429970 8jg7:C (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    429971 8jg7:D (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    429972 8jg7:E (2.85) BS01 PLP 4.1.1.- N/A Q9MA74 N/A
    429973 8jg8:A (2.90002) BS01 C74 2.7.11.1 GO:0000212 ... O14965 38248139
    429974 8jgd:A (1.60037) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    429975 8jgd:A (1.60037) BS02 DWI 3.6.5.2 GO:0003924 ... P01116 37534597
    429976 8jgj:A (3.3) BS01 ATP N/A N/A P51791 39107281
    429977 8jgj:A (3.3) BS02 CL N/A N/A P51791 39107281
    429978 8jgj:B (3.3) BS01 ATP N/A N/A P51791 39107281
    429979 8jgj:B (3.3) BS02 CL N/A N/A P51791 39107281
    429980 8jgk:A (4.04) BS01 ADP N/A N/A P51791 39107281
    429981 8jgk:B (4.04) BS01 ADP N/A N/A P51791 39107281
    429982 8jgl:A (3.14) BS01 AMP N/A N/A P51791 39107281
    429983 8jgl:B (3.14) BS01 AMP N/A N/A P51791 39107281
    429984 8jgp:A (3.02) BS02 PO4 ? GO:0016462 ... Q9RYW9 38682481
    429985 8jgq:A (2.5) BS01 UG3 ? GO:0016462 ... Q9RYW9 38682481
    429986 8jgr:A (2.5) BS01 PO4 ? GO:0016462 ... Q9RYW9 38682481
    429987 8jgr:A (2.5) BS02 PO4 ? GO:0016462 ... Q9RYW9 38682481
    429988 8jgv:A (2.98) BS01 ATP N/A N/A P51791 39107281
    429989 8jgv:B (2.98) BS01 ATP N/A N/A P51791 39107281
    429990 8jh0:A (2.79) BS01 RET ? GO:0007602 ... S2D3K4 37890784
    429991 8jh0:B (2.79) BS01 RET ? GO:0007602 ... S2D3K4 37890784
    429992 8jh5:A (3.7) BS01 NPS ? GO:0005515 ... Q9C6B8 N/A
    429993 8jh5:B (3.7) BS01 NPS ? GO:0005515 ... Q9C6B8 N/A
    429994 8jh6:A (1.8) BS01 GG2 N/A N/A N/A N/A
    429995 8jh6:B (1.8) BS01 GG2 N/A N/A N/A N/A
    429996 8jh9:A (2.0) BS01 FER N/A GO:0030600 ... N/A N/A
    429997 8jhe:A (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    429998 8jhe:B (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    429999 8jhe:C (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    430000 8jhe:D (2.201) BS01 FAD N/A GO:0016491 ... N/A 37737277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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