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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427401 8j07:IA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427402 8j07:IB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427403 8j07:IC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427404 8j07:ID (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427405 8j07:IE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427406 8j07:IF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427407 8j07:IG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427408 8j07:IH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427409 8j07:II (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427410 8j07:IJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427411 8j07:IK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427412 8j07:IL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427413 8j07:IM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427414 8j07:IN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427415 8j07:IO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427416 8j07:IP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427417 8j07:IQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427418 8j07:IR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427419 8j07:IS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427420 8j07:IT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427421 8j07:IU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427422 8j07:IV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427423 8j07:IW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427424 8j07:IX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427425 8j07:IY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427426 8j07:JB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427427 8j07:JB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427428 8j07:JC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427429 8j07:JD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427430 8j07:JD (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427431 8j07:JE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427432 8j07:JF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427433 8j07:JG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427434 8j07:JH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427435 8j07:JH (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427436 8j07:JI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427437 8j07:JJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427438 8j07:JJ (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427439 8j07:JK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427440 8j07:JL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427441 8j07:JM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427442 8j07:JN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427443 8j07:JN (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427444 8j07:JO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427445 8j07:JP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427446 8j07:JP (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427447 8j07:JQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427448 8j07:JR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427449 8j07:JS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427450 8j07:JT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427451 8j07:JU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427452 8j07:JV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427453 8j07:JV (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427454 8j07:JW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427455 8j07:JX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427456 8j07:JX (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427457 8j07:JY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427458 8j07:JZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427459 8j07:KB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427460 8j07:KB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427461 8j07:KC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427462 8j07:KD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427463 8j07:KE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427464 8j07:KF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427465 8j07:KG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427466 8j07:KH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427467 8j07:KI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427468 8j07:KJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427469 8j07:KK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427470 8j07:KL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427471 8j07:KM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427472 8j07:KN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427473 8j07:KO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427474 8j07:KP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427475 8j07:KQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427476 8j07:KR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427477 8j07:KS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427478 8j07:KT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427479 8j07:KU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427480 8j07:KV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427481 8j07:KW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427482 8j07:KX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427483 8j07:KY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427484 8j07:KZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427485 8j07:LB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427486 8j07:LC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427487 8j07:LD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427488 8j07:LE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427489 8j07:LF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427490 8j07:LG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427491 8j07:LH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427492 8j07:LI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427493 8j07:LJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427494 8j07:LK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427495 8j07:LL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427496 8j07:LM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427497 8j07:LN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427498 8j07:LO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427499 8j07:LP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427500 8j07:LQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427501 8j07:LR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427502 8j07:LS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427503 8j07:LT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427504 8j07:LU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427505 8j07:LV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427506 8j07:LW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427507 8j07:LX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427508 8j07:LY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427509 8j07:LZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427510 8j07:MA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427511 8j07:MC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427512 8j07:MD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427513 8j07:ME (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427514 8j07:MF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427515 8j07:MG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427516 8j07:MH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427517 8j07:MI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427518 8j07:MJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427519 8j07:MK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427520 8j07:ML (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427521 8j07:MM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427522 8j07:MN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427523 8j07:MO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427524 8j07:MP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427525 8j07:MQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427526 8j07:MR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427527 8j07:MS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427528 8j07:MT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427529 8j07:MU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427530 8j07:MV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427531 8j07:MW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427532 8j07:MX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427533 8j07:MY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427534 8j07:MZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427535 8j07:NA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427536 8j07:NB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427537 8j07:NC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427538 8j07:ND (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427539 8j07:NE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427540 8j07:NF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427541 8j07:NG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427542 8j07:NH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427543 8j07:NI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427544 8j07:NJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427545 8j07:NK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427546 8j07:NL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427547 8j07:NM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427548 8j07:NN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427549 8j07:NO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427550 8j07:NP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427551 8j07:NQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427552 8j07:NR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427553 8j07:NS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427554 8j07:NT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427555 8j07:NU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427556 8j07:NV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427557 8j07:NW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427558 8j07:NX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427559 8j07:NZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427560 8j07:OA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427561 8j07:OB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427562 8j07:OC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427563 8j07:OD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427564 8j07:OE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427565 8j07:OF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427566 8j07:OG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427567 8j07:OH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427568 8j07:OI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427569 8j07:OJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427570 8j07:OK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427571 8j07:OL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427572 8j07:OM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427573 8j07:ON (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427574 8j07:OO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427575 8j07:OP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427576 8j07:OQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427577 8j07:OR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427578 8j07:OS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427579 8j07:OT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427580 8j07:OU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427581 8j07:OV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427582 8j07:OW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427583 8j07:OX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427584 8j07:OY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427585 8j07:PA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427586 8j07:PB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427587 8j07:PC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427588 8j07:PD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427589 8j07:PE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427590 8j07:PF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427591 8j07:PG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427592 8j07:PH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427593 8j07:PI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427594 8j07:PJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427595 8j07:PK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427596 8j07:PL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427597 8j07:PM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427598 8j07:PN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427599 8j07:PO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427600 8j07:PP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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