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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    427201 8j07:AO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427202 8j07:AP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427203 8j07:AQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427204 8j07:AR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427205 8j07:AS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427206 8j07:AT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427207 8j07:AU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427208 8j07:AV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427209 8j07:AW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427210 8j07:AX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427211 8j07:AY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427212 8j07:AZ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427213 8j07:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427214 8j07:BB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427215 8j07:BC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427216 8j07:BD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427217 8j07:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427218 8j07:BF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427219 8j07:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427220 8j07:BH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427221 8j07:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427222 8j07:BJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427223 8j07:BK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427224 8j07:BL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427225 8j07:BM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427226 8j07:BN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427227 8j07:BO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427228 8j07:BP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427229 8j07:BQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427230 8j07:BR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427231 8j07:BS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427232 8j07:BT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427233 8j07:BU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427234 8j07:BV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427235 8j07:BW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427236 8j07:BX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427237 8j07:BY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427238 8j07:CB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427239 8j07:CC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427240 8j07:CD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427241 8j07:CE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427242 8j07:CF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427243 8j07:CG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427244 8j07:CH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427245 8j07:CI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427246 8j07:CJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427247 8j07:CK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427248 8j07:CL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427249 8j07:CM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427250 8j07:CN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427251 8j07:CO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427252 8j07:CP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427253 8j07:CQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427254 8j07:CR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427255 8j07:CR (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427256 8j07:CS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427257 8j07:CT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427258 8j07:CU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427259 8j07:CV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427260 8j07:CW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427261 8j07:CX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427262 8j07:CY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427263 8j07:CZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427264 8j07:DB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427265 8j07:DB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427266 8j07:DC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427267 8j07:DD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427268 8j07:DE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427269 8j07:DF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427270 8j07:DG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427271 8j07:DH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427272 8j07:DI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427273 8j07:DJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427274 8j07:DK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427275 8j07:DL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427276 8j07:DM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427277 8j07:DN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427278 8j07:DN (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427279 8j07:DO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427280 8j07:DP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427281 8j07:DQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427282 8j07:DR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427283 8j07:DS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427284 8j07:DT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427285 8j07:DU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427286 8j07:DV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427287 8j07:DV (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427288 8j07:DW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427289 8j07:DX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427290 8j07:DY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427291 8j07:DZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427292 8j07:EB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427293 8j07:EB (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427294 8j07:EC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427295 8j07:ED (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427296 8j07:EE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427297 8j07:EF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427298 8j07:EG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427299 8j07:EH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427300 8j07:EH (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427301 8j07:EI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427302 8j07:EJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427303 8j07:EK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427304 8j07:EL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427305 8j07:EL (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427306 8j07:EM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427307 8j07:EN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427308 8j07:EN (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427309 8j07:EO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427310 8j07:EP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427311 8j07:EP (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427312 8j07:EQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427313 8j07:ER (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427314 8j07:ES (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427315 8j07:ET (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427316 8j07:EU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427317 8j07:EV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427318 8j07:EW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427319 8j07:EX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427320 8j07:EX (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427321 8j07:EY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427322 8j07:EZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427323 8j07:FB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427324 8j07:FC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427325 8j07:FD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427326 8j07:FE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427327 8j07:FF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427328 8j07:FG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427329 8j07:FH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427330 8j07:FI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427331 8j07:FJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427332 8j07:FK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427333 8j07:FL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427334 8j07:FL (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427335 8j07:FM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427336 8j07:FN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427337 8j07:FO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427338 8j07:FP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427339 8j07:FQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427340 8j07:FR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427341 8j07:FS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427342 8j07:FT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427343 8j07:FU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427344 8j07:FV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427345 8j07:FW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427346 8j07:FX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427347 8j07:FY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427348 8j07:FZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427349 8j07:GB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427350 8j07:GC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427351 8j07:GD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427352 8j07:GE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427353 8j07:GF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427354 8j07:GG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427355 8j07:GH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427356 8j07:GI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427357 8j07:GJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427358 8j07:GK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427359 8j07:GL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427360 8j07:GM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427361 8j07:GN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427362 8j07:GO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427363 8j07:GP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427364 8j07:GQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427365 8j07:GR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427366 8j07:GS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427367 8j07:GT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427368 8j07:GU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427369 8j07:GV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427370 8j07:GW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427371 8j07:GX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427372 8j07:GY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427373 8j07:GZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427374 8j07:HA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427375 8j07:HB (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427376 8j07:HC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427377 8j07:HD (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427378 8j07:HE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427379 8j07:HF (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427380 8j07:HG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427381 8j07:HH (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427382 8j07:HI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427383 8j07:HJ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427384 8j07:HK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427385 8j07:HL (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427386 8j07:HL (4.1) BS02 GTP ? GO:0000226 ... P68371 37258679
    427387 8j07:HM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427388 8j07:HN (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427389 8j07:HO (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427390 8j07:HP (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427391 8j07:HQ (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427392 8j07:HR (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427393 8j07:HS (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427394 8j07:HT (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427395 8j07:HU (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427396 8j07:HV (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427397 8j07:HW (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427398 8j07:HX (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    427399 8j07:HY (4.1) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 37258679
    427400 8j07:HZ (4.1) BS01 GDP ? GO:0000226 ... P68371 37258679
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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