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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422401 8i7r:DD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422402 8i7r:DE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422403 8i7r:DF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422404 8i7r:DF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422405 8i7r:DG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422406 8i7r:DH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422407 8i7r:DH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422408 8i7r:DI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422409 8i7r:DJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422410 8i7r:DJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422411 8i7r:DK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422412 8i7r:DL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422413 8i7r:EA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422414 8i7r:EB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422415 8i7r:EB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422416 8i7r:EC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422417 8i7r:ED (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422418 8i7r:ED (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422419 8i7r:EE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422420 8i7r:EF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422421 8i7r:EF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422422 8i7r:EG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422423 8i7r:EH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422424 8i7r:EH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422425 8i7r:EI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422426 8i7r:EJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422427 8i7r:EJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422428 8i7r:EK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422429 8i7r:EL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422430 8i7r:FA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422431 8i7r:FB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422432 8i7r:FB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422433 8i7r:FC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422434 8i7r:FD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422435 8i7r:FE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422436 8i7r:FF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422437 8i7r:FF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422438 8i7r:FG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422439 8i7r:FH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422440 8i7r:FH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422441 8i7r:FI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422442 8i7r:FJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422443 8i7r:FJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422444 8i7r:FK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422445 8i7r:FL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422446 8i7r:GA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422447 8i7r:GB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422448 8i7r:GB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422449 8i7r:GC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422450 8i7r:GD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422451 8i7r:GD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422452 8i7r:GE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422453 8i7r:GF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422454 8i7r:GF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422455 8i7r:GG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422456 8i7r:GH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422457 8i7r:GH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422458 8i7r:GI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422459 8i7r:GJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422460 8i7r:GJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422461 8i7r:GK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422462 8i7r:GL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422463 8i7r:HA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422464 8i7r:HB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422465 8i7r:HB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422466 8i7r:HC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422467 8i7r:HD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422468 8i7r:HD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422469 8i7r:HE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422470 8i7r:HF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422471 8i7r:HF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422472 8i7r:HG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422473 8i7r:HH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422474 8i7r:HH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422475 8i7r:HI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422476 8i7r:HJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422477 8i7r:HJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422478 8i7r:HK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422479 8i7r:HL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422480 8i7r:IA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422481 8i7r:IB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422482 8i7r:IB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422483 8i7r:IC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422484 8i7r:ID (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422485 8i7r:ID (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422486 8i7r:IE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422487 8i7r:IF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422488 8i7r:IF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422489 8i7r:IG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422490 8i7r:IH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422491 8i7r:IH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422492 8i7r:II (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422493 8i7r:IJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422494 8i7r:IJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422495 8i7r:IK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422496 8i7r:IL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422497 8i7r:IL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422498 8i7r:IM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422499 8i7r:JA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422500 8i7r:JB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422501 8i7r:JB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422502 8i7r:JC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422503 8i7r:JD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422504 8i7r:JD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422505 8i7r:JE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422506 8i7r:JF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422507 8i7r:JF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422508 8i7r:JG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422509 8i7r:JH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422510 8i7r:JH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422511 8i7r:JI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422512 8i7r:JJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422513 8i7r:JJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422514 8i7r:JK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422515 8i7r:JL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422516 8i7r:KA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422517 8i7r:KB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422518 8i7r:KB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422519 8i7r:KC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422520 8i7r:KD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422521 8i7r:KD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422522 8i7r:KE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422523 8i7r:KF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422524 8i7r:KF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422525 8i7r:KG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422526 8i7r:KH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422527 8i7r:KH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422528 8i7r:KI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422529 8i7r:KJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422530 8i7r:KJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422531 8i7r:KK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422532 8i7r:KL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422533 8i7r:LA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422534 8i7r:LB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422535 8i7r:LB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422536 8i7r:LC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422537 8i7r:LD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422538 8i7r:LD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422539 8i7r:LE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422540 8i7r:LF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422541 8i7r:LF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422542 8i7r:LG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422543 8i7r:LH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422544 8i7r:LH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422545 8i7r:LI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422546 8i7r:LJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422547 8i7r:LJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422548 8i7r:LK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422549 8i7r:LL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422550 8i7r:MB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422551 8i7r:MB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422552 8i7r:MC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422553 8i7r:MD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422554 8i7r:MD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422555 8i7r:ME (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422556 8i7r:MF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422557 8i7r:MF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422558 8i7r:MG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422559 8i7r:MH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422560 8i7r:MH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422561 8i7r:MI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422562 8i7r:MJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422563 8i7r:MJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422564 8i7r:MK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422565 8i7r:ML (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422566 8i7r:ML (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422567 8i7r:MM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422568 8i7r:NA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422569 8i7r:NB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422570 8i7r:NB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422571 8i7r:NC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422572 8i7r:ND (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422573 8i7r:ND (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422574 8i7r:NE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422575 8i7r:NF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422576 8i7r:NF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422577 8i7r:NG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422578 8i7r:NH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422579 8i7r:NH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422580 8i7r:NI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422581 8i7r:NJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422582 8i7r:NJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422583 8i7r:NK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422584 8i7r:NL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422585 8i7r:OA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422586 8i7r:OB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422587 8i7r:OB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422588 8i7r:OC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422589 8i7r:OD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422590 8i7r:OD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422591 8i7r:OE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422592 8i7r:OF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422593 8i7r:OF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422594 8i7r:OG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422595 8i7r:OH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422596 8i7r:OH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422597 8i7r:OI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422598 8i7r:OJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422599 8i7r:OJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422600 8i7r:OK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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