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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    421801 8i0h:A (3.4) BS02 DTP N/A N/A Q9VUL1 N/A
    421802 8i0h:A (3.4) BS03 DUT N/A N/A Q9VUL1 N/A
    421803 8i0h:A (3.4) BS04 DGT N/A N/A Q9VUL1 N/A
    421804 8i0i:A (3.5) BS01 DTP N/A N/A Q9VUL1 N/A
    421805 8i0i:A (3.5) BS02 DUT N/A N/A Q9VUL1 N/A
    421806 8i0i:A (3.5) BS03 DUT N/A N/A Q9VUL1 N/A
    421807 8i0i:C (3.5) BS01 DUT N/A N/A Q9VUL1 N/A
    421808 8i0i:C (3.5) BS02 DTP N/A N/A Q9VUL1 N/A
    421809 8i0i:C (3.5) BS03 DUT N/A N/A Q9VUL1 N/A
    421810 8i0i:D (3.5) BS01 DTP N/A N/A Q9VUL1 N/A
    421811 8i0i:D (3.5) BS02 DUT N/A N/A Q9VUL1 N/A
    421812 8i0i:D (3.5) BS03 DUT N/A N/A Q9VUL1 N/A
    421813 8i0i:E (3.5) BS01 DUT N/A N/A Q9VUL1 N/A
    421814 8i0i:E (3.5) BS02 DTP N/A N/A Q9VUL1 N/A
    421815 8i0i:E (3.5) BS03 DUT N/A N/A Q9VUL1 N/A
    421816 8i0k:A (2.86) BS02 TPP 1.2.4.2 GO:0016624 ... Q02218 N/A
    421817 8i0k:B (2.86) BS01 TPP 1.2.4.2 GO:0016624 ... Q02218 N/A
    421818 8i0k:B (2.86) BS03 8EL 1.2.4.2 GO:0016624 ... Q02218 N/A
    421819 8i0l:A (3.6) BS01 NJ6 2.7.11.22
    2.7.11.23
    GO:0004672 ... P50750 N/A
    421820 8i0m:A (2.7772) BS01 NJ6 2.7.11.22 GO:0000082 ... Q00534 N/A
    421821 8i0p:C (3.4) BS01 GTP N/A GO:0000398 ... Q15029 39068178
    421822 8i0r:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    421823 8i0r:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    421824 8i0s:A (4.2) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    421825 8i0s:C (4.2) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    421826 8i0t:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    421827 8i0t:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    421828 8i0u:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    421829 8i0u:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    421830 8i0v:A (3.0) BS05 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    421831 8i0v:C (3.0) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    421832 8i0w:A (3.4) BS07 IHP N/A GO:0000244 ... Q6P2Q9 39068178
    421833 8i0w:C (3.4) BS02 GTP N/A GO:0000398 ... Q15029 39068178
    421834 8i0y:A (1.792) BS02 O76 1.13.11.27 GO:0003868 ... P93836 N/A
    421835 8i11:A (1.855) BS01 FMN 2.7.11.1 N/A A0A1Y1HNG4 N/A
    421836 8i15:A (2.19) BS02 O7C 1.13.11.27 GO:0003868 ... P93836 N/A
    421837 8i18:A (1.1) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421838 8i18:B (1.1) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421839 8i19:A (1.48) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421840 8i19:B (1.48) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421841 8i1a:A (1.4) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421842 8i1a:B (1.4) BS01 8DG 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421843 8i1d:A (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421844 8i1d:B (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421845 8i1e:A (1.1) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421846 8i1e:B (1.1) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421847 8i1f:A (1.05) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421848 8i1f:B (1.05) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421849 8i1g:A (1.18) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421850 8i1i:A (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421851 8i1i:B (1.2) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421852 8i1j:A (1.08) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421853 8i1j:B (1.08) BS01 6U4 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    421854 8i1m:A (1.699) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 37207644
    421855 8i1m:A (1.699) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O43252 37207644
    421856 8i1n:A (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421857 8i1n:B (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421858 8i1n:B (2.8) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421859 8i1n:C (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421860 8i1n:C (2.8) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421861 8i1n:D (2.8) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421862 8i1o:A (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421863 8i1o:A (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421864 8i1o:B (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421865 8i1o:B (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421866 8i1o:C (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421867 8i1o:C (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421868 8i1o:D (2.4) BS01 ADP 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421869 8i1o:D (2.4) BS02 ADX 2.7.1.25
    2.7.7.4
    GO:0000103 ... O95340 37207644
    421870 8i1u:A (3.24) BS01 ADP ? GO:0000242 ... P17987 38307855
    421871 8i1u:A (3.24) BS02 AF3 ? GO:0000242 ... P17987 38307855
    421872 8i1u:B (3.24) BS01 ADP ? GO:0002199 ... P78371 38307855
    421873 8i1u:B (3.24) BS03 AF3 ? GO:0002199 ... P78371 38307855
    421874 8i1u:C (3.24) BS01 ADP ? GO:0002199 ... P49368 38307855
    421875 8i1u:C (3.24) BS02 AF3 ? GO:0002199 ... P49368 38307855
    421876 8i1u:D (3.24) BS01 ADP ? GO:0002199 ... P50991 38307855
    421877 8i1u:D (3.24) BS02 AF3 ? GO:0002199 ... P50991 38307855
    421878 8i1u:E (3.24) BS01 ADP ? GO:0003730 ... P48643 38307855
    421879 8i1u:E (3.24) BS02 AF3 ? GO:0003730 ... P48643 38307855
    421880 8i1u:F (3.24) BS01 ADP ? GO:0003723 ... P40227 38307855
    421881 8i1u:F (3.24) BS02 AF3 ? GO:0003723 ... P40227 38307855
    421882 8i1u:G (3.24) BS01 ADP ? GO:0005515 ... Q99832 38307855
    421883 8i1u:G (3.24) BS02 AF3 ? GO:0005515 ... Q99832 38307855
    421884 8i1u:H (3.24) BS01 ADP ? GO:0002199 ... P50990 38307855
    421885 8i1u:H (3.24) BS02 AF3 ? GO:0002199 ... P50990 38307855
    421886 8i1u:I (3.24) BS01 ADP ? GO:0000242 ... P17987 38307855
    421887 8i1u:I (3.24) BS02 AF3 ? GO:0000242 ... P17987 38307855
    421888 8i1u:J (3.24) BS01 ADP ? GO:0002199 ... P78371 38307855
    421889 8i1u:J (3.24) BS02 AF3 ? GO:0002199 ... P78371 38307855
    421890 8i1u:K (3.24) BS01 ADP ? GO:0002199 ... P49368 38307855
    421891 8i1u:K (3.24) BS02 AF3 ? GO:0002199 ... P49368 38307855
    421892 8i1u:L (3.24) BS01 ADP ? GO:0002199 ... P50991 38307855
    421893 8i1u:L (3.24) BS02 AF3 ? GO:0002199 ... P50991 38307855
    421894 8i1u:M (3.24) BS01 ADP ? GO:0003730 ... P48643 38307855
    421895 8i1u:M (3.24) BS02 AF3 ? GO:0003730 ... P48643 38307855
    421896 8i1u:N (3.24) BS01 ADP ? GO:0003723 ... P40227 38307855
    421897 8i1u:N (3.24) BS02 AF3 ? GO:0003723 ... P40227 38307855
    421898 8i1u:O (3.24) BS01 ADP ? GO:0005515 ... Q99832 38307855
    421899 8i1u:O (3.24) BS02 AF3 ? GO:0005515 ... Q99832 38307855
    421900 8i1u:P (3.24) BS01 ADP ? GO:0002199 ... P50990 38307855
    421901 8i1w:B (1.8) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421902 8i1y:A (1.78) BS01 O7L 6.1.1.2 GO:0000166 ... P00954 37070195
    421903 8i1y:B (1.78) BS01 O7L 6.1.1.2 GO:0000166 ... P00954 37070195
    421904 8i1y:B (1.78) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421905 8i1z:A (1.8) BS01 O7R 6.1.1.2 GO:0000166 ... P00954 37070195
    421906 8i1z:B (1.8) BS01 O7R 6.1.1.2 GO:0000166 ... P00954 37070195
    421907 8i1z:B (1.8) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421908 8i22:A (2.15) BS01 OBK ? N/A Q00IB3 N/A
    421909 8i22:B (2.15) BS01 OBK ? N/A Q00IB3 N/A
    421910 8i22:C (2.15) BS01 OBK ? N/A Q00IB3 N/A
    421911 8i22:D (2.15) BS01 OBK ? N/A Q00IB3 N/A
    421912 8i22:E (2.15) BS01 OBK ? N/A Q00IB3 N/A
    421913 8i22:F (2.15) BS01 OBK ? N/A Q00IB3 N/A
    421914 8i27:A (1.95) BS01 O8C 6.1.1.2 GO:0000166 ... P00954 37070195
    421915 8i27:B (1.95) BS01 O8C 6.1.1.2 GO:0000166 ... P00954 37070195
    421916 8i27:B (1.95) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421917 8i29:A (2.72) BS02 NAD 1.1.1.- GO:0000166 ... Q8R612 N/A
    421918 8i2a:A (2.35) BS01 5OB 6.1.1.2 GO:0000166 ... P00954 37070195
    421919 8i2a:B (2.35) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421920 8i2a:B (2.35) BS02 5OB 6.1.1.2 GO:0000166 ... P00954 37070195
    421921 8i2b:A (2.2) BS01 O5L 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    421922 8i2b:A (2.2) BS02 AR6 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    421923 8i2b:B (2.2) BS01 O5L 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    421924 8i2b:B (2.2) BS02 AR6 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    421925 8i2c:A (2.07) BS01 O8U 6.1.1.2 GO:0000166 ... P00954 37070195
    421926 8i2c:B (2.07) BS01 O8U 6.1.1.2 GO:0000166 ... P00954 37070195
    421927 8i2c:B (2.07) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421928 8i2g:R (2.8) BS01 CLR ? GO:0004930 ... P23945 36720854
    421929 8i2g:R (2.8) BS02 CLR ? GO:0004930 ... P23945 36720854
    421930 8i2g:R (2.8) BS03 CLR ? GO:0004930 ... P23945 36720854
    421931 8i2g:R (2.8) BS04 CLR ? GO:0004930 ... P23945 36720854
    421932 8i2g:R (2.8) BS05 CLR ? GO:0004930 ... P23945 36720854
    421933 8i2g:R (2.8) BS06 CLR ? GO:0004930 ... P23945 36720854
    421934 8i2g:R (2.8) BS07 CLR ? GO:0004930 ... P23945 36720854
    421935 8i2g:R (2.8) BS08 CLR ? GO:0004930 ... P23945 36720854
    421936 8i2g:R (2.8) BS09 O6F ? GO:0004930 ... P23945 36720854
    421937 8i2j:A (2.65) BS01 O9F 6.1.1.2 GO:0000166 ... P00954 37070195
    421938 8i2j:B (2.65) BS01 O9F 6.1.1.2 GO:0000166 ... P00954 37070195
    421939 8i2j:B (2.65) BS02 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421940 8i2l:A (1.95) BS01 CLW 6.1.1.2 GO:0000166 ... P00954 37070195
    421941 8i2l:B (1.95) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421942 8i2l:B (1.95) BS02 CLW 6.1.1.2 GO:0000166 ... P00954 37070195
    421943 8i2m:A (2.1) BS01 3JD 6.1.1.2 GO:0000166 ... P00954 37070195
    421944 8i2m:B (2.1) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    421945 8i2n:A (2.29) BS01 O4U 2.7.11.1 GO:0004672 ... Q13546 38261830
    421946 8i2n:B (2.29) BS01 O4U 2.7.11.1 GO:0004672 ... Q13546 38261830
    421947 8i2p:A (1.797) BS02 OAY 1.13.11.27 GO:0003868 ... P93836 N/A
    421948 8i2r:A (1.36) BS01 FRU 2.4.1.10 GO:0009758 ... B2IF78 37280168
    421949 8i2r:A (1.36) BS02 BDF 2.4.1.10 GO:0009758 ... B2IF78 37280168
    421950 8i2r:A (1.36) BS03 BDF 2.4.1.10 GO:0009758 ... B2IF78 37280168
    421951 8i2s:A (1.592) BS02 T4I 1.13.11.27 GO:0003868 ... P93836 N/A
    421952 8i2u:A (1.989) BS02 T5I 1.13.11.27 GO:0003868 ... P93836 N/A
    421953 8i2z:A (2.3) BS01 RET ? GO:0005216 ... A0A977XLG0 36859551
    421954 8i2z:A (2.3) BS02 K3I ? GO:0005216 ... A0A977XLG0 36859551
    421955 8i30:A (2.0) BS01 OF9 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37517202
    421956 8i34:A (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX42 37517696
    421957 8i34:A (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX42 37517696
    421958 8i34:B (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX50 37517696
    421959 8i34:B (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX50 37517696
    421960 8i34:C (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX42 37517696
    421961 8i34:C (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX42 37517696
    421962 8i34:D (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX50 37517696
    421963 8i34:D (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX50 37517696
    421964 8i34:E (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX42 37517696
    421965 8i34:E (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX42 37517696
    421966 8i34:F (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX50 37517696
    421967 8i34:F (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX50 37517696
    421968 8i34:G (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX42 37517696
    421969 8i34:G (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX42 37517696
    421970 8i34:H (2.44) BS01 O1U ? GO:0005509 ... A0AA52HX50 37517696
    421971 8i34:H (2.44) BS02 AXT ? GO:0005509 ... A0AA52HX50 37517696
    421972 8i36:A (1.887) BS02 T2I 1.13.11.27 GO:0003868 ... P93836 N/A
    421973 8i39:A (2.85) BS01 A8S ? GO:0005524 ... Q84TH5 37666961
    421974 8i39:B (2.85) BS01 A8S ? GO:0005524 ... Q84TH5 37666961
    421975 8i3a:A (3.04) BS01 ATP ? GO:0005524 ... Q84TH5 37666961
    421976 8i3a:A (3.04) BS03 ATP ? GO:0005524 ... Q84TH5 37666961
    421977 8i3a:B (3.04) BS01 ATP ? GO:0005524 ... Q84TH5 37666961
    421978 8i3a:B (3.04) BS02 ATP ? GO:0005524 ... Q84TH5 37666961
    421979 8i3b:A (3.08) BS01 ATP ? GO:0005524 ... Q84TH5 37666961
    421980 8i3b:A (3.08) BS02 ATP ? GO:0005524 ... Q84TH5 37666961
    421981 8i3b:B (3.08) BS01 ATP ? GO:0005524 ... Q84TH5 37666961
    421982 8i3b:B (3.08) BS02 ATP ? GO:0005524 ... Q84TH5 37666961
    421983 8i3c:A (2.85) BS01 Y01 ? GO:0005524 ... Q84TH5 37666961
    421984 8i3c:A (2.85) BS02 Y01 ? GO:0005524 ... Q84TH5 37666961
    421985 8i3c:B (2.85) BS01 Y01 ? GO:0005524 ... Q84TH5 37666961
    421986 8i3c:B (2.85) BS02 Y01 ? GO:0005524 ... Q84TH5 37666961
    421987 8i3i:A (2.68) BS01 ANP ? N/A Q00IB3 N/A
    421988 8i3i:B (2.68) BS01 ANP ? N/A Q00IB3 N/A
    421989 8i3i:C (2.68) BS01 ANP ? N/A Q00IB3 N/A
    421990 8i3i:D (2.68) BS01 ANP ? N/A Q00IB3 N/A
    421991 8i3p:A (1.3) BS01 OS0 3.5.4.1 GO:0003824 ... Q12178 N/A
    421992 8i3p:B (1.3) BS01 OS0 3.5.4.1 GO:0003824 ... Q12178 N/A
    421993 8i3v:A (2.85) BS01 68P N/A GO:0003779 ... P23975 39048818
    421994 8i3y:A (2.4) BS01 SCA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    421995 8i40:A (2.79) BS01 COA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    421996 8i40:C (2.79) BS01 COA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    421997 8i49:A (2.41) BS01 ATP ? N/A Q00IB3 N/A
    421998 8i49:B (2.41) BS01 ATP ? N/A Q00IB3 N/A
    421999 8i49:C (2.41) BS01 ATP ? N/A Q00IB3 N/A
    422000 8i49:D (2.41) BS01 ATP ? N/A Q00IB3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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