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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 39065 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    28701 7k2b:B
    (2.31)    		 BS01 >7k2b:P
    ADEETGEFA
    		 ? N/A Q14145 33683866
    28702 7k2c:A
    (2.11)    		 BS01 >7k2c:P
    ADEETGEAA
    		 ? N/A Q14145 33683866
    28703 7k2d:B
    (2.21)    		 BS01 >7k2d:P (identical to 7k2e:P, 3zgc:C)
    GDEETGE
    		 ? N/A Q14145 33683866
    28704 7k2e:A
    (2.03)    		 BS01 >7k2e:P (identical to 7k2d:P, 3zgc:C)
    GDEETGE
    		 ? N/A Q14145 33683866
    28705 7k2f:A
    (2.37)    		 BS01 >7k2f:C
    GAEETGE
    		 ? N/A Q14145 33683866
    28706 7k2g:B
    (2.15)    		 BS01 >7k2g:P
    GDEEAGE
    		 ? N/A Q14145 33683866
    28707 7k2h:B
    (2.09)    		 BS01 >7k2h:P (identical to 8ejr:C)
    GDPETGE
    		 ? N/A Q14145 33683866
    28708 7k2i:B
    (2.42)    		 BS01 >7k2i:P
    GAPETGE
    		 ? N/A Q14145 33683866
    28709 7k2j:B
    (2.52)    		 BS01 >7k2j:P
    GDPEAGE
    		 ? N/A Q14145 33683866
    28710 7k2k:B
    (1.98)    		 BS01 >7k2k:P
    ADEETGE
    		 ? N/A Q14145 33683866
    28711 7k2l:A
    (1.98)    		 BS01 >7k2l:P
    ANPETGE
    		 ? N/A Q14145 33683866
    28712 7k2m:A
    (2.02)    		 BS01 >7k2m:P
    GEPETGE
    		 ? N/A Q14145 33683866
    28713 7k2n:A
    (2.22)    		 BS01 >7k2n:P (identical to 8ejs:C)
    ADPETGE
    		 ? N/A Q14145 33683866
    28714 7k2o:A
    (2.11)    		 BS01 >7k2o:P
    EDPETGE
    		 ? N/A Q14145 33683866
    28715 7k2p:A
    (2.11)    		 BS01 >7k2p:P (identical to 7k2r:P, 7k2s:P)
    PDPETGE
    		 ? N/A Q14145 33683866
    28716 7k2q:B
    (2.37)    		 BS01 >7k2q:P
    aDPETGE
    		 ? N/A Q14145 33683866
    28717 7k2r:A
    (2.1)    		 BS01 >7k2r:P (identical to 7k2p:P, 7k2s:P)
    PDPETGE
    		 ? N/A Q14145 33683866
    28718 7k2s:A
    (2.13)    		 BS01 >7k2s:P (identical to 7k2p:P, 7k2r:P)
    PDPETGE
    		 ? N/A Q14145 33683866
    28719 7k3j:A
    (2.5)    		 BS01 >7k3j:B
    STLYKNAATQTERRTATRDAGTQVR
    		 ? GO:0000132 ... Q24117 33574069
    28720 7k3j:A
    (2.5)    		 BS02 >7k3j:H
    LYKNAATQTERRTATRDAGTQVRLE
    		 ? GO:0000132 ... Q24117 33574069
    28721 7k3j:C
    (2.5)    		 BS01 >7k3j:D (identical to 7k3j:F)
    TATRDAGTQVR
    		 ? GO:0000132 ... Q24117 33574069
    28722 7k3j:E
    (2.5)    		 BS01 >7k3j:F (identical to 7k3j:D)
    TATRDAGTQVR
    		 ? GO:0000132 ... Q24117 33574069
    28723 7k3j:G
    (2.5)    		 BS01 >7k3j:B
    STLYKNAATQTERRTATRDAGTQVR
    		 ? GO:0000132 ... Q24117 33574069
    28724 7k3j:G
    (2.5)    		 BS02 >7k3j:H
    LYKNAATQTERRTATRDAGTQVRLE
    		 ? GO:0000132 ... Q24117 33574069
    28725 7k3j:I
    (2.5)    		 BS01 >7k3j:B
    STLYKNAATQTERRTATRDAGTQVR
    		 ? GO:0000132 ... Q24117 33574069
    28726 7k3j:I
    (2.5)    		 BS02 >7k3j:H
    LYKNAATQTERRTATRDAGTQVRLE
    		 ? GO:0000132 ... Q24117 33574069
    28727 7k3j:K
    (2.5)    		 BS01 >7k3j:B
    STLYKNAATQTERRTATRDAGTQVR
    		 ? GO:0000132 ... Q24117 33574069
    28728 7k3j:K
    (2.5)    		 BS02 >7k3j:H
    LYKNAATQTERRTATRDAGTQVRLE
    		 ? GO:0000132 ... Q24117 33574069
    28729 7k3k:A
    (1.415)    		 BS01 >7k3k:B
    STLYKNAATQTERR
    		 ? GO:0000132 ... Q24117 33574069
    28730 7k3l:A
    (1.79)    		 BS01 >7k3l:B
    TATRDAGTQVRL
    		 ? GO:0000132 ... Q24117 33574069
    28731 7k75:A
    (2.5)    		 BS01 >7k75:E (identical to 7k75:F)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28732 7k75:B
    (2.5)    		 BS01 >7k75:E (identical to 7k75:F)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28733 7k75:C
    (2.5)    		 BS01 >7k75:F (identical to 7k75:E)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28734 7k75:D
    (2.5)    		 BS01 >7k75:F (identical to 7k75:E)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28735 7k75:I
    (2.5)    		 BS01 >7k75:F (identical to 7k75:E)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28736 7k75:J
    (2.5)    		 BS01 >7k75:F (identical to 7k75:E)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28737 7k75:M
    (2.5)    		 BS01 >7k75:E (identical to 7k75:F)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28738 7k75:N
    (2.5)    		 BS01 >7k75:E (identical to 7k75:F)
    KPKHKKLK
    		 N/A N/A N/A 34162751
    28739 7k76:A
    (2.14)    		 BS01 >7k76:P
    LRKPKHKKLKQ
    		 N/A N/A N/A 34162751
    28740 7k76:B
    (2.14)    		 BS01 >7k76:P
    LRKPKHKKLKQ
    		 N/A N/A N/A 34162751
    28741 7k76:H
    (2.14)    		 BS01 >7k76:P
    LRKPKHKKLKQ
    		 N/A N/A N/A 34162751
    28742 7k76:L
    (2.14)    		 BS01 >7k76:P
    LRKPKHKKLKQ
    		 N/A N/A N/A 34162751
    28743 7k7f:A
    (-1.00)    		 BS01 >7k7f:B
    KNAGFELPLT
    		 ? N/A Q6NF81 33723052
    28744 7k7h:E
    (3.0)    		 BS01 >7k7h:G
    FYDARPVIELILSK
    		 ? GO:0005515 ... Q8Z6A3 34496256
    28745 7k7r:A
    (2.5)    		 BS01 >7k7r:C
    SSSGSPPRRPPPGR
    		 N/A N/A N/A 35073561
    28746 7k7r:B
    (2.5)    		 BS01 >7k7r:C
    SSSGSPPRRPPPGR
    		 N/A N/A N/A 35073561
    28747 7k7r:D
    (2.5)    		 BS01 >7k7r:F
    SSSGSPPRRPPP
    		 N/A N/A N/A 35073561
    28748 7k7r:E
    (2.5)    		 BS01 >7k7r:F
    SSSGSPPRRPPP
    		 N/A N/A N/A 35073561
    28749 7k80:A
    (2.4)    		 BS01 >7k80:C (identical to 8gvb:P, 8gvi:P, 5hgb:C, 5hgb:F, 5hgb:I, 5hgb:L, 7k80:F, 7k81:C, 4wu5:C, 4wu5:F)
    RYPLTFGW
    		 ? N/A A0A5H2UYS3 33441440
    28750 7k80:D
    (2.4)    		 BS01 >7k80:F (identical to 8gvb:P, 8gvi:P, 5hgb:C, 5hgb:F, 5hgb:I, 5hgb:L, 7k80:C, 7k81:C, 4wu5:C, 4wu5:F)
    RYPLTFGW
    		 ? N/A A0A5H2UYS3 33441440
    28751 7k81:A
    (2.0)    		 BS01 >7k81:C (identical to 8gvb:P, 8gvi:P, 5hgb:C, 5hgb:F, 5hgb:I, 5hgb:L, 7k80:C, 7k80:F, 4wu5:C, 4wu5:F)
    RYPLTFGW
    		 ? N/A A0A5H2UYS3 33441440
    28752 7kcl:A
    (3.14)    		 BS01 >7kcl:C
    VIKDLVPDLSNFYAQYKSIEPYL
    		 ? GO:0003723 ... Q12931 N/A
    28753 7kcl:B
    (3.14)    		 BS01 >7kcl:C
    VIKDLVPDLSNFYAQYKSIEPYL
    		 ? GO:0003723 ... Q12931 N/A
    28754 7kco:A
    (1.86)    		 BS01 >7kco:C (identical to 5dz3:C, 5dzh:D, 5eit:C, 3erd:C, 3l03:C, 5mku:B, 2p15:C, 2qxm:C, 5tlv:D, 5tm3:D, 5tm7:D, 5tm8:C, 5tml:D, 5tmo:D, 5tmr:D, 5tn1:D, 5tn4:C, 5tn4:D, 1x7e:C, 1x7e:D)
    HKILHRLLQDS
    		 ? GO:0003677 ... P51449 33852312
    28755 7kco:A
    (1.86)    		 BS02 >7kco:D (identical to 3l0l:C)
    EKHKILHRLLQDS
    		 ? GO:0003677 ... P51449 33852312
    28756 7kco:B
    (1.86)    		 BS01 >7kco:C (identical to 5dz3:C, 5dzh:D, 5eit:C, 3erd:C, 3l03:C, 5mku:B, 2p15:C, 2qxm:C, 5tlv:D, 5tm3:D, 5tm7:D, 5tm8:C, 5tml:D, 5tmo:D, 5tmr:D, 5tn1:D, 5tn4:C, 5tn4:D, 1x7e:C, 1x7e:D)
    HKILHRLLQDS
    		 ? GO:0003677 ... P51449 33852312
    28757 7kco:B
    (1.86)    		 BS02 >7kco:D (identical to 3l0l:C)
    EKHKILHRLLQDS
    		 ? GO:0003677 ... P51449 33852312
    28758 7kd6:B
    (2.6)    		 BS01 >7kd6:F (identical to 7kd6:L, 7kd6:R)
    TFEDYLHNVVFVPRP
    		 ? GO:0005179 ... P01308 36181268
    28759 7kd6:E
    (2.6)    		 BS01 >7kd6:F (identical to 7kd6:L, 7kd6:R)
    TFEDYLHNVVFVPRP
    		 2.7.10.1 N/A P06213 36181268
    28760 7kd6:H
    (2.6)    		 BS01 >7kd6:L (identical to 7kd6:F, 7kd6:R)
    TFEDYLHNVVFVPRP
    		 ? GO:0005179 ... P01308 36181268
    28761 7kd6:K
    (2.6)    		 BS01 >7kd6:L (identical to 7kd6:F, 7kd6:R)
    TFEDYLHNVVFVPRP
    		 2.7.10.1 N/A P06213 36181268
    28762 7kd6:N
    (2.6)    		 BS01 >7kd6:R (identical to 7kd6:F, 7kd6:L)
    TFEDYLHNVVFVPRP
    		 ? GO:0005179 ... P01308 36181268
    28763 7kd6:Q
    (2.6)    		 BS01 >7kd6:R (identical to 7kd6:F, 7kd6:L)
    TFEDYLHNVVFVPRP
    		 2.7.10.1 N/A P06213 36181268
    28764 7kd6:T
    (2.6)    		 BS01 >7kd6:X
    TFEDYLHNVVFVPR
    		 ? GO:0005179 ... P01308 36181268
    28765 7kd6:W
    (2.6)    		 BS01 >7kd6:X
    TFEDYLHNVVFVPR
    		 2.7.10.1 N/A P06213 36181268
    28766 7kd7:A
    (1.44)    		 BS01 >7kd7:B (identical to 2dey:A, 7kd7:E, 7kpu:E, 7kpu:B, 4u9w:E, 4u9w:F, 4u9w:G, 4u9w:H)
    SGRGK
    		 2.3.1.257 GO:0010485 ... Q86UY6 34110812
    28767 7kd7:D
    (1.44)    		 BS01 >7kd7:E (identical to 2dey:A, 7kd7:B, 7kpu:E, 7kpu:B, 4u9w:E, 4u9w:F, 4u9w:G, 4u9w:H)
    SGRGK
    		 2.3.1.257 GO:0010485 ... Q86UY6 34110812
    28768 7kdf:A
    (2.72)    		 BS01 >7kdf:E
    RAAAVTSTLKARIEKMKAKSRREGTTRT
    		 ? GO:0031262 ... P40460 33591274
    28769 7kdf:C
    (2.72)    		 BS01 >7kdf:E
    RAAAVTSTLKARIEKMKAKSRREGTTRT
    		 ? N/A Q04477 33591274
    28770 7kei:A
    (1.75)    		 BS01 >7kei:C
    ERNAGSGIIISDGGGGSLVP
    		 ? GO:0006955 ... Q30066 N/A
    28771 7kei:B
    (1.75)    		 BS01 >7kei:C
    ERNAGSGIIISDGGGGSLVP
    		 ? GO:0006955 ... Q5SU54 N/A
    28772 7kev:A
    (2.8)    		 BS01 >7kev:C
    FVSTTaaDRPCG
    		 3.4.21.- N/A Q8NBP7 34547225
    28773 7kev:B
    (2.8)    		 BS01 >7kev:C
    FVSTTaaDRPCG
    		 3.4.21.- GO:0004252 ... Q8NBP7 34547225
    28774 7kfa:A
    (2.45)    		 BS01 >7kfa:D
    FVPTTaaEAPCA
    		 3.4.21.- N/A Q8NBP7 34547225
    28775 7kfa:B
    (2.45)    		 BS01 >7kfa:D
    FVPTTaaEAPCA
    		 3.4.21.- GO:0004252 ... Q8NBP7 34547225
    28776 7kgo:A
    (2.15)    		 BS01 >7kgo:C
    ILLNKHIDA
    		 ? N/A Q861F7 33521593
    28777 7kgp:A
    (1.396)    		 BS01 >7kgp:C
    GMSRIGMEV
    		 ? N/A Q861F7 33521593
    28778 7kgq:A
    (1.34)    		 BS01 >7kgq:C (identical to 8dnt:D, 8dnt:J, 8dnt:Q, 8dnt:X)
    LLLDRLNQL
    		 ? N/A Q861F7 33521593
    28779 7kgr:A
    (1.55)    		 BS01 >7kgr:C
    LQLPQGTTL
    		 ? N/A Q861F7 33521593
    28780 7kgs:A
    (1.58)    		 BS01 >7kgs:C
    ALNTPKDHI
    		 ? N/A Q861F7 33521593
    28781 7kgt:A
    (1.9)    		 BS01 >7kgt:C
    RLN
    		 ? N/A Q861F7 33521593
    28782 7kh0:R
    (2.8)    		 BS01 >7kh0:L (identical to 7bb6:H, 7bb7:H, 7dw9:C, 7r0c:B, 1yf4:B)
    CYFQNCPRG
    		 ? GO:0001992 ... P30518 33664408
    28783 7kjm:A
    (1.4)    		 BS01 >7kjm:B (identical to 7kjm:D, 7kjn:B, 7kjn:C)
    EFWYVEFEKLLR
    		 2.3.2.27 GO:0005634 ... Q00987 N/A
    28784 7kjm:A
    (1.4)    		 BS02 >7kjm:D (identical to 7kjm:B, 7kjn:B, 7kjn:C)
    EFWYVEFEKLLR
    		 2.3.2.27 GO:0005634 ... Q00987 N/A
    28785 7kjm:C
    (1.4)    		 BS01 >7kjm:B (identical to 7kjm:D, 7kjn:B, 7kjn:C)
    EFWYVEFEKLLR
    		 2.3.2.27 GO:0005634 ... Q00987 N/A
    28786 7kjm:C
    (1.4)    		 BS02 >7kjm:D (identical to 7kjm:B, 7kjn:B, 7kjn:C)
    EFWYVEFEKLLR
    		 2.3.2.27 GO:0005634 ... Q00987 N/A
    28787 7kjn:A
    (2.8)    		 BS01 >7kjn:B (identical to 7kjm:B, 7kjm:D, 7kjn:C)
    EFWYVEFEKLLR
    		 ? GO:0005634 ... O15151 N/A
    28788 7kjn:A
    (2.8)    		 BS02 >7kjn:C (identical to 7kjm:B, 7kjm:D, 7kjn:B)
    EFWYVEFEKLLR
    		 ? GO:0005634 ... O15151 N/A
    28789 7kl0:A
    (2.4)    		 BS01 >7kl0:C (identical to 7kl0:D, 7uis:B)
    RNKLRRQHDYDT
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28790 7kl0:A
    (2.4)    		 BS02 >7kl0:D (identical to 7kl0:C, 7uis:B)
    RNKLRRQHDYDT
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28791 7kl0:B
    (2.4)    		 BS01 >7kl0:C (identical to 7kl0:D, 7uis:B)
    RNKLRRQHDYDT
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28792 7kl0:B
    (2.4)    		 BS02 >7kl0:D (identical to 7kl0:C, 7uis:B)
    RNKLRRQHDYDT
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28793 7kl1:A
    (2.4)    		 BS01 >7kl1:C
    RNKLRRQHDYDTFVD
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28794 7kl1:A
    (2.4)    		 BS02 >7kl1:D
    RNKLRRQHDYDTF
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28795 7kl1:B
    (2.4)    		 BS01 >7kl1:C
    RNKLRRQHDYDTFVD
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28796 7kl1:B
    (2.4)    		 BS02 >7kl1:D
    RNKLRRQHDYDTF
    		 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    28797 7kl2:A
    (2.56)    		 BS01 >7kl2:B (identical to 7ujt:B)
    RNKLRRQHDYDTFVDL
    		 2.7.11.17 GO:0004672 ... Q9UQM7 N/A
    28798 7kl5:A
    (1.65)    		 BS01 >7kl5:B
    FALRYNILTLMRMLSLKSLKKQMKKVKK
    		 ? GO:0000086 ... P0DP23 33754699
    28799 7kld:A
    (2.25)    		 BS01 >7kld:Q (identical to 7kld:C)
    KLNLQFF
    		 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    28800 7kld:B
    (2.25)    		 BS01 >7kld:C (identical to 7kld:Q)
    KLNLQFF
    		 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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