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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    197001 9fxj:C (3.06) BS01 CO N/A N/A Q16769 39125848
    197002 9fz4:A (2.44) BS01 ZN N/A N/A P0DTD1 N/A
    197003 9fz4:A (2.44) BS02 ZN N/A N/A P0DTD1 N/A
    197004 9fz4:B (2.44) BS01 ZN N/A N/A P0DTD1 N/A
    197005 9fz4:B (2.44) BS02 ZN N/A N/A P0DTD1 N/A
    197006 9fz4:B (2.44) BS03 MG N/A N/A P0DTD1 N/A
    197007 9fzc:A (2.27) BS01 CA N/A N/A P0A910 N/A
    197008 9fzc:B (2.27) BS01 CA N/A N/A P0A910 N/A
    197009 9fzk:A (1.3) BS01 ZN N/A N/A P0DTD1 N/A
    197010 9fzk:A (1.3) BS02 ZN N/A N/A P0DTD1 N/A
    197011 9fzk:B (1.3) BS01 ZN N/A N/A P0DTD1 N/A
    197012 9fzk:B (1.3) BS02 ZN N/A N/A P0DTD1 N/A
    197013 9g7h:A (1.75) BS02 ZN N/A N/A Q8N6T7 38940296
    197014 9g7h:B (1.75) BS02 ZN N/A N/A Q8N6T7 38940296
    197015 9gaw:C (2.9) BS01 ZN N/A N/A Q9NYG5 N/A
    197016 9gaw:C (2.9) BS02 ZN N/A N/A Q9NYG5 N/A
    197017 9gaw:C (2.9) BS03 ZN N/A N/A Q9NYG5 N/A
    197018 9gaw:N (2.9) BS01 ZN N/A N/A Q9UJX6 N/A
    197019 9gaw:S (2.9) BS01 ZN N/A N/A Q9UKT4 N/A
    197020 9gaw:S (2.9) BS02 ZN N/A N/A Q9UKT4 N/A
    197021 9gd1:W (4.0) BS05 MG N/A N/A P32657 39270644
    197022 9gd3:W (3.0) BS05 MG N/A N/A P32657 39270644
    197023 9gle:A (1.88) BS01 ZN N/A N/A O75164 N/A
    197024 9gle:B (1.88) BS01 ZN N/A N/A O75164 N/A
    197025 9gny:B (1.8) BS01 ZN N/A N/A P0DTD1 N/A
    197026 9gny:B (1.8) BS02 ZN N/A N/A P0DTD1 N/A
    197027 9grp:B (2.1) BS01 ZN N/A N/A P0DTD1 N/A
    197028 9grp:B (2.1) BS02 ZN N/A N/A P0DTD1 N/A
    197029 9grq:B (1.85) BS01 ZN N/A N/A P0DTD1 N/A
    197030 9grq:B (1.85) BS02 ZN N/A N/A P0DTD1 N/A
    197031 9ica:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197032 9icb:A (3.2) BS03 CO 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197033 9icf:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197034 9icg:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197035 9ich:A (2.9) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197036 9ici:A (3.1) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197037 9icl:A (2.8) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197038 9icl:A (2.8) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    197039 9icq:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197040 9icr:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197041 9icr:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197042 9ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197043 9ict:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197044 9icv:A (2.7) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    197045 9ij6:C (2.4) BS02 MG N/A GO:0000166 ... A0A059ZTK9 N/A
    197046 9ild:A (2.179) BS02 ZN N/A GO:0006508 ... A0A3J1GR98 N/A
    197047 9imj:A (2.8) BS01 MG N/A N/A A0A346FJ89 N/A
    197048 9iq9:A (1.58) BS01 MN N/A GO:0004053 ... D2Z025 N/A
    197049 9iq9:A (1.58) BS02 MN N/A GO:0004053 ... D2Z025 N/A
    197050 9iq9:B (1.58) BS01 CU1 N/A GO:0004053 ... D2Z025 N/A
    197051 9iq9:B (1.58) BS02 CU1 N/A GO:0004053 ... D2Z025 N/A
    197052 9iq9:B (1.58) BS03 CU1 N/A GO:0004053 ... D2Z025 N/A
    197053 9it8:A (1.954) BS04 CA N/A N/A P80025 N/A
    197054 9iuy:A (1.51) BS01 MG N/A N/A P09528 N/A
    197055 9iuy:B (1.51) BS01 MG N/A N/A P09528 N/A
    197056 9iuy:C (1.51) BS01 MG N/A N/A P09528 N/A
    197057 9iuy:D (1.51) BS01 MG N/A N/A P09528 N/A
    197058 9iuy:E (1.51) BS01 MG N/A N/A P09528 N/A
    197059 9iuy:F (1.51) BS01 MG N/A N/A P09528 N/A
    197060 9iuy:G (1.51) BS01 MG N/A N/A P09528 N/A
    197061 9iuy:H (1.51) BS01 MG N/A N/A P09528 N/A
    197062 9iuy:I (1.51) BS01 MG N/A N/A P09528 N/A
    197063 9iuy:J (1.51) BS01 MG N/A N/A P09528 N/A
    197064 9iuy:K (1.51) BS01 MG N/A N/A P09528 N/A
    197065 9iuy:L (1.51) BS01 MG N/A N/A P09528 N/A
    197066 9iuy:M (1.51) BS01 MG N/A N/A P09528 N/A
    197067 9iuy:N (1.51) BS01 MG N/A N/A P09528 N/A
    197068 9iuy:O (1.51) BS01 MG N/A N/A P09528 N/A
    197069 9iuy:P (1.51) BS01 MG N/A N/A P09528 N/A
    197070 9iuy:Q (1.51) BS01 MG N/A N/A P09528 N/A
    197071 9iuy:R (1.51) BS01 MG N/A N/A P09528 N/A
    197072 9iuy:S (1.51) BS01 MG N/A N/A P09528 N/A
    197073 9iuy:T (1.51) BS01 MG N/A N/A P09528 N/A
    197074 9iuy:U (1.51) BS01 MG N/A N/A P09528 N/A
    197075 9iuy:V (1.51) BS01 MG N/A N/A P09528 N/A
    197076 9iuy:W (1.51) BS01 MG N/A N/A P09528 N/A
    197077 9iuy:X (1.51) BS01 MG N/A N/A P09528 N/A
    197078 9iy0:H (1.97) BS01 MG N/A N/A N/A N/A
    197079 9iyk:A (2.34) BS01 CU N/A N/A P00441 N/A
    197080 9iyk:A (2.34) BS02 ZN N/A N/A P00441 N/A
    197081 9iyk:B (2.34) BS01 CU N/A N/A P00441 N/A
    197082 9iyk:B (2.34) BS02 ZN N/A N/A P00441 N/A
    197083 9iyk:C (2.34) BS01 CU N/A N/A P00441 N/A
    197084 9iyk:C (2.34) BS02 ZN N/A N/A P00441 N/A
    197085 9iyk:D (2.34) BS01 CU N/A N/A P00441 N/A
    197086 9iyk:D (2.34) BS02 ZN N/A N/A P00441 N/A
    197087 9iyk:E (2.34) BS01 CU N/A N/A P00441 N/A
    197088 9iyk:E (2.34) BS02 ZN N/A N/A P00441 N/A
    197089 9iyk:F (2.34) BS01 CU N/A N/A P00441 N/A
    197090 9iyk:F (2.34) BS02 ZN N/A N/A P00441 N/A
    197091 9iyk:G (2.34) BS01 CU N/A N/A P00441 N/A
    197092 9iyk:G (2.34) BS02 ZN N/A N/A P00441 N/A
    197093 9iyk:H (2.34) BS01 CU N/A N/A P00441 N/A
    197094 9iyk:H (2.34) BS02 ZN N/A N/A P00441 N/A
    197095 9iyk:I (2.34) BS01 CU N/A N/A P00441 N/A
    197096 9iyk:I (2.34) BS02 ZN N/A N/A P00441 N/A
    197097 9iyk:J (2.34) BS01 CU N/A N/A P00441 N/A
    197098 9iyk:J (2.34) BS02 ZN N/A N/A P00441 N/A
    197099 9iyk:K (2.34) BS01 CU N/A N/A P00441 N/A
    197100 9iyk:K (2.34) BS02 ZN N/A N/A P00441 N/A
    197101 9iyk:L (2.34) BS01 CU N/A N/A P00441 N/A
    197102 9iyk:L (2.34) BS02 ZN N/A N/A P00441 N/A
    197103 9ja1:A (2.98) BS04 ZN N/A N/A P04050 N/A
    197104 9ja1:A (2.98) BS05 ZN N/A N/A P04050 N/A
    197105 9ja1:B (2.98) BS03 ZN N/A N/A P08518 N/A
    197106 9ja1:C (2.98) BS01 ZN N/A N/A P16370 N/A
    197107 9ja1:J (2.98) BS01 ZN N/A N/A P22139 N/A
    197108 9ja1:L (2.98) BS01 ZN N/A N/A P40422 N/A
    197109 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    197110 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    197111 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    197112 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    197113 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    197114 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    197115 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197116 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197117 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197118 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197119 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197120 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197121 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    197122 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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