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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    196601 9chw:A (2.16) BS05 MG N/A N/A Q9Y253 39259676
    196602 9ci9:A (2.09) BS04 MG N/A N/A Q9Y253 39259676
    196603 9ci9:A (2.09) BS05 MG N/A N/A Q9Y253 39259676
    196604 9cih:A (2.15) BS04 MG N/A N/A Q9Y253 39259676
    196605 9cih:A (2.15) BS05 MG N/A N/A Q9Y253 39259676
    196606 9cii:A (1.85) BS02 CA N/A N/A Q5HHM4 N/A
    196607 9cij:A (1.9) BS02 CA N/A N/A Q5HHM4 N/A
    196608 9cik:A (1.95) BS02 CA N/A N/A Q5HHM4 N/A
    196609 9cil:A (2.0) BS02 CA N/A N/A Q5HHM4 N/A
    196610 9ciq:A (2.8) BS04 CA N/A N/A Q9Y253 39259676
    196611 9ciq:A (2.8) BS05 CA N/A N/A Q9Y253 39259676
    196612 9cj9:A (2.98) BS04 MG N/A N/A Q9Y253 39259676
    196613 9cj9:A (2.98) BS05 MG N/A N/A Q9Y253 39259676
    196614 9ckv:A (3.19) BS03 CA N/A N/A P08648 N/A
    196615 9ckv:A (3.19) BS04 CA N/A N/A P08648 N/A
    196616 9ckv:A (3.19) BS05 CA N/A N/A P08648 N/A
    196617 9ckv:A (3.19) BS06 CA N/A N/A P08648 N/A
    196618 9ckv:B (3.19) BS01 MN N/A N/A P05556 N/A
    196619 9ckv:B (3.19) BS02 MN N/A N/A P05556 N/A
    196620 9ckv:B (3.19) BS03 MN N/A N/A P05556 N/A
    196621 9clp:A (3.43) BS01 ZN N/A N/A Q90495 39195771
    196622 9clp:A (3.43) BS02 CA N/A N/A Q90495 39195771
    196623 9clp:A (3.43) BS03 CA N/A N/A Q90495 39195771
    196624 9clp:A (3.43) BS04 CA N/A N/A Q90495 39195771
    196625 9cp7:A (1.751) BS01 ZN N/A N/A Q46N53 39263660
    196626 9cp7:B (1.751) BS02 ZN N/A N/A Q46N53 39263660
    196627 9cp8:A (1.57) BS01 ZN N/A N/A Q46N53 39263660
    196628 9cp8:B (1.57) BS01 ZN N/A N/A Q46N53 39263660
    196629 9cp9:A (2.013) BS01 ZN N/A N/A Q46N53 39263660
    196630 9cp9:B (2.013) BS01 ZN N/A N/A Q46N53 39263660
    196631 9cpo:A (3.5) BS03 ZN N/A N/A P0C6Y3 39091740
    196632 9cpo:A (3.5) BS04 ZN N/A N/A P0C6Y3 39091740
    196633 9csi:A (2.8) BS02 MG N/A N/A A0A6F8TGG1 39172133
    196634 9ctq:A (2.41) BS01 CA N/A N/A O76090 39277606
    196635 9ctq:B (2.41) BS01 CA N/A N/A O76090 39277606
    196636 9ctq:C (2.41) BS01 CA N/A N/A O76090 39277606
    196637 9ctq:D (2.41) BS01 CA N/A N/A O76090 39277606
    196638 9ctq:E (2.41) BS01 CA N/A N/A O76090 39277606
    196639 9ctr:A (2.42) BS02 CA N/A N/A O76090 39277606
    196640 9ctr:B (2.42) BS01 CA N/A N/A O76090 39277606
    196641 9ctr:C (2.42) BS02 CA N/A N/A O76090 39277606
    196642 9ctr:D (2.42) BS01 CA N/A N/A O76090 39277606
    196643 9ctr:E (2.42) BS01 CA N/A N/A O76090 39277606
    196644 9cts:A (2.45) BS02 CA N/A N/A O76090 39277606
    196645 9cts:B (2.45) BS01 CA N/A N/A O76090 39277606
    196646 9cts:C (2.45) BS01 CA N/A N/A O76090 39277606
    196647 9cts:D (2.45) BS02 CA N/A N/A O76090 39277606
    196648 9cts:E (2.45) BS01 CA N/A N/A O76090 39277606
    196649 9ctt:A (2.5) BS01 CA N/A N/A O76090 39277606
    196650 9ctt:B (2.5) BS01 CA N/A N/A O76090 39277606
    196651 9ctt:C (2.5) BS01 CA N/A N/A O76090 39277606
    196652 9ctt:D (2.5) BS01 CA N/A N/A O76090 39277606
    196653 9ctt:E (2.5) BS01 CA N/A N/A O76090 39277606
    196654 9cu9:A (1.9) BS02 CA N/A N/A Q5HHM4 N/A
    196655 9cuo:A (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    196656 9cuo:B (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    196657 9cuo:C (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    196658 9cuo:D (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    196659 9cuo:E (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    196660 9cuo:F (1.6) BS01 ZN N/A N/A Q96SW2 39151120
    196661 9d8s:A (2.12) BS02 CA N/A N/A A3FQ16 N/A
    196662 9d8s:A (2.12) BS03 CA N/A N/A A3FQ16 N/A
    196663 9d8s:A (2.12) BS04 MG N/A N/A A3FQ16 N/A
    196664 9d8s:A (2.12) BS05 MG N/A N/A A3FQ16 N/A
    196665 9de2:A (-1.00) BS01 ZN N/A N/A O75081 N/A
    196666 9de2:A (-1.00) BS02 ZN N/A N/A O75081 N/A
    196667 9em1:A (1.5) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    196668 9emj:B (1.79) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196669 9emj:B (1.79) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196670 9eml:B (2.4) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196671 9eml:B (2.4) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196672 9emv:B (2.34) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196673 9emv:B (2.34) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196674 9en2:A (2.2) BS01 CA N/A N/A Q15113 38901640
    196675 9en2:A (2.2) BS02 CA N/A N/A Q15113 38901640
    196676 9eng:A (2.2) BS01 MN N/A N/A A6T5R0 39236497
    196677 9eng:A (2.2) BS02 MN N/A N/A A6T5R0 39236497
    196678 9enp:A (2.12) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    196679 9enp:A (2.12) BS04 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    196680 9enq:A (2.12) BS02 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    196681 9enq:A (2.12) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    196682 9ent:A (2.2) BS02 ZN N/A N/A Q64610 39008358
    196683 9ent:A (2.2) BS03 ZN N/A N/A Q64610 39008358
    196684 9ent:A (2.2) BS04 CA N/A N/A Q64610 39008358
    196685 9enz:AAA (1.6) BS01 PT 3.2.1.17 GO:0003796 ... P00698 38727007
    196686 9eo4:B (2.66) BS05 NA N/A GO:0001504 ... Q01959 39112703
    196687 9eo8:BBB (1.76) BS02 PT 4.6.1.18 GO:0004519 ... P61824 38727007
    196688 9eoc:B (3.3) BS01 MG ? GO:0005515 ... Q96SY0 38823386
    196689 9eqf:A (1.6) BS01 FE2 N/A GO:0016020 ... Q6WZB0 39114090
    196690 9est:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 1998677
    196691 9etk:A (1.48) BS01 MN N/A N/A A0A0H5Y1H1 N/A
    196692 9etk:A (1.48) BS02 MG N/A N/A A0A0H5Y1H1 N/A
    196693 9etk:A (1.48) BS03 MG N/A N/A A0A0H5Y1H1 N/A
    196694 9etn:A (1.584) BS01 CA N/A GO:0005515 ... Q8R555 39029889
    196695 9etn:A (1.584) BS02 CA N/A GO:0005515 ... Q8R555 39029889
    196696 9etn:A (1.584) BS03 CA N/A GO:0005515 ... Q8R555 39029889
    196697 9etn:A (1.584) BS04 CA N/A GO:0005515 ... Q8R555 39029889
    196698 9etn:A (1.584) BS05 CA N/A GO:0005515 ... Q8R555 39029889
    196699 9etn:A (1.584) BS06 CA N/A GO:0005515 ... Q8R555 39029889
    196700 9etn:A (1.584) BS07 K N/A GO:0005515 ... Q8R555 39029889
    196701 9etn:A (1.584) BS08 K N/A GO:0005515 ... Q8R555 39029889
    196702 9etn:A (1.584) BS09 K N/A GO:0005515 ... Q8R555 39029889
    196703 9etn:A (1.584) BS10 NA N/A GO:0005515 ... Q8R555 39029889
    196704 9eu5:A (3.0) BS02 ZN N/A N/A Q64610 39008358
    196705 9eu5:A (3.0) BS03 ZN N/A N/A Q64610 39008358
    196706 9eu5:A (3.0) BS04 ZN N/A N/A Q64610 39008358
    196707 9eu5:A (3.0) BS05 CA N/A N/A Q64610 39008358
    196708 9eun:B (2.33) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196709 9eun:B (2.33) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    196710 9euo:A (3.2) BS04 NA N/A N/A Q7K4Y6 39010681
    196711 9eup:A (3.0) BS03 NA N/A N/A Q7K4Y6 39010681
    196712 9eup:A (3.0) BS04 NA N/A N/A Q7K4Y6 39010681
    196713 9ev3:A (1.219) BS03 MG N/A N/A Q8NMG5 39080980
    196714 9ev5:A (1.863) BS02 MG N/A N/A Q8NMG5 39080980
    196715 9ev5:B (1.863) BS03 MG N/A N/A Q8NMG5 39080980
    196716 9ev5:C (1.863) BS02 MG N/A N/A Q8NMG5 39080980
    196717 9ev5:D (1.863) BS03 MG N/A N/A Q8NMG5 39080980
    196718 9ev6:A (1.891) BS03 MG N/A N/A Q8NMG5 39080980
    196719 9ev6:B (1.891) BS04 MG N/A N/A Q8NMG5 39080980
    196720 9ev6:C (1.891) BS03 MG N/A N/A Q8NMG5 39080980
    196721 9ev6:D (1.891) BS04 MG N/A N/A Q8NMG5 39080980
    196722 9evm:A (1.8) BS02 CU N/A N/A Q89EJ6 39002715
    196723 9evm:A (1.8) BS03 CU N/A N/A Q89EJ6 39002715
    196724 9evv:A (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    196725 9evv:B (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    196726 9evv:C (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    196727 9evv:D (2.44) BS01 MG N/A N/A B5ZZ34 39126499
    196728 9evx:A (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 38900892
    196729 9evx:D (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    196730 9evx:a (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 38900892
    196731 9evx:d (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    196732 9ex0:A (1.45) BS01 NA N/A GO:0003796 ... P00698 38842919
    196733 9ex2:A (1.172) BS01 NA N/A GO:0003796 ... P00698 38842919
    196734 9ey5:A (2.61) BS02 ZN 1.14.18.- N/A P17643 38642076
    196735 9ey5:A (2.61) BS03 ZN 1.14.18.- N/A P17643 38642076
    196736 9ey5:A (2.61) BS04 ZN 1.14.18.- N/A P17643 38642076
    196737 9ey5:A (2.61) BS05 ZN 1.14.18.- N/A P17643 38642076
    196738 9ey6:A (2.228) BS02 ZN 1.14.18.- N/A P17643 38642076
    196739 9ey6:A (2.228) BS03 ZN 1.14.18.- N/A P17643 38642076
    196740 9ey6:A (2.228) BS04 ZN 1.14.18.- N/A P17643 38642076
    196741 9ey6:A (2.228) BS05 ZN 1.14.18.- N/A P17643 38642076
    196742 9ey7:A (2.61) BS01 ZN 1.14.18.- N/A P17643 38642076
    196743 9ey7:A (2.61) BS02 ZN 1.14.18.- N/A P17643 38642076
    196744 9ey7:A (2.61) BS03 ZN 1.14.18.- N/A P17643 38642076
    196745 9ey7:A (2.61) BS04 ZN 1.14.18.- N/A P17643 38642076
    196746 9ey8:AA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196747 9ey8:AA (2.2) BS03 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196748 9ey8:BA (2.2) BS01 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196749 9ey8:BA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196750 9ey8:CA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196751 9ey8:CA (2.2) BS03 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196752 9ey8:DA (2.2) BS01 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196753 9ey8:DA (2.2) BS02 ZN 1.14.18.- GO:0016491 ... P17643 38642076
    196754 9ezl:A (2.97) BS01 CA N/A N/A I3NX86 39109746
    196755 9ezl:A (2.97) BS02 MG N/A N/A I3NX86 39109746
    196756 9ezl:B (2.97) BS01 CA N/A N/A I3NX86 39109746
    196757 9ezl:B (2.97) BS02 MG N/A N/A I3NX86 39109746
    196758 9ezl:C (2.97) BS01 CA N/A N/A I3NX86 39109746
    196759 9ezl:C (2.97) BS02 MG N/A N/A I3NX86 39109746
    196760 9ezl:D (2.97) BS01 CA N/A N/A I3NX86 39109746
    196761 9ezl:D (2.97) BS02 MG N/A N/A I3NX86 39109746
    196762 9ezl:E (2.97) BS01 CA N/A N/A I3NX86 39109746
    196763 9ezl:E (2.97) BS02 MG N/A N/A I3NX86 39109746
    196764 9ezl:F (2.97) BS01 CA N/A N/A I3NX86 39109746
    196765 9ezl:F (2.97) BS02 MG N/A N/A I3NX86 39109746
    196766 9ezl:G (2.97) BS01 CA N/A N/A I3NX86 39109746
    196767 9ezl:G (2.97) BS02 MG N/A N/A I3NX86 39109746
    196768 9ezl:H (2.97) BS01 CA N/A N/A I3NX86 39109746
    196769 9ezl:H (2.97) BS02 MG N/A N/A I3NX86 39109746
    196770 9f0f:A (2.1) BS02 FE 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    196771 9f17:A (1.7) BS01 CA N/A N/A P56137 39062851
    196772 9f17:B (1.7) BS01 CA N/A N/A P56137 39062851
    196773 9f1b:AC (3.01) BS02 ZN N/A N/A G1SK22 39169182
    196774 9f1b:AE (3.01) BS02 ZN N/A N/A N/A 39169182
    196775 9f1b:AG (3.01) BS02 ZN N/A N/A G1U7M4 39169182
    196776 9f1b:Bg (3.01) BS02 ZN N/A N/A G1TXG5 39169182
    196777 9f1b:Bj (3.01) BS03 ZN N/A N/A U3KPD5 39169182
    196778 9f1b:Bm (3.01) BS02 ZN N/A N/A P0DXC2 39169182
    196779 9f1b:Bo (3.01) BS02 ZN N/A N/A A0AAA9WX15 39169182
    196780 9f1b:Bp (3.01) BS02 ZN N/A N/A G1SY53 39169182
    196781 9f1c:AC (3.78) BS02 ZN N/A N/A G1SK22 39169182
    196782 9f1c:AE (3.78) BS02 ZN N/A N/A N/A 39169182
    196783 9f1c:AG (3.78) BS02 ZN N/A N/A G1U7M4 39169182
    196784 9f1c:Bg (3.78) BS02 ZN N/A N/A G1TXG5 39169182
    196785 9f1c:Bj (3.78) BS03 ZN N/A N/A U3KPD5 39169182
    196786 9f1c:Bm (3.78) BS02 ZN N/A N/A P0DXC2 39169182
    196787 9f1c:Bo (3.78) BS02 ZN N/A N/A A0AAA9WX15 39169182
    196788 9f1c:Bp (3.78) BS02 ZN N/A N/A G1SY53 39169182
    196789 9f1d:AC (3.26) BS02 ZN N/A N/A G1SK22 39169182
    196790 9f1d:AE (3.26) BS02 ZN N/A N/A N/A 39169182
    196791 9f1d:AG (3.26) BS02 ZN N/A N/A G1U7M4 39169182
    196792 9f1d:Bg (3.26) BS02 ZN N/A N/A G1TXG5 39169182
    196793 9f1d:Bj (3.26) BS03 ZN N/A N/A U3KPD5 39169182
    196794 9f1d:Bm (3.26) BS02 ZN N/A N/A P0DXC2 39169182
    196795 9f1d:Bo (3.26) BS02 ZN N/A N/A A0AAA9WX15 39169182
    196796 9f1d:Bp (3.26) BS02 ZN N/A N/A G1SY53 39169182
    196797 9f1t:A (3.0) BS01 CU N/A N/A Q04HQ8 39126090
    196798 9f1t:A (3.0) BS02 CU N/A N/A Q04HQ8 39126090
    196799 9f1t:A (3.0) BS03 CU N/A N/A Q04HQ8 39126090
    196800 9f1t:A (3.0) BS04 CU N/A N/A Q04HQ8 39126090
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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