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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    196401 9b8y:C (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196402 9b8y:C (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196403 9b8y:D (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196404 9b8y:D (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196405 9b8z:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196406 9b8z:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196407 9b90:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196408 9b90:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196409 9b90:B (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196410 9b90:B (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196411 9b90:C (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196412 9b90:C (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196413 9b90:D (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196414 9b90:D (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196415 9b91:A (3.3) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196416 9b91:A (3.3) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    196417 9b92:A (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196418 9b92:B (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196419 9b92:C (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196420 9b92:D (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196421 9b94:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196422 9b94:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196423 9b94:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196424 9b94:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    196425 9b9g:H (3.5) BS01 CA N/A N/A P63098 39216471
    196426 9b9g:H (3.5) BS02 CA N/A N/A P63098 39216471
    196427 9b9g:J (3.5) BS01 CA N/A N/A P63098 39216471
    196428 9b9g:J (3.5) BS02 CA N/A N/A P63098 39216471
    196429 9b9m:A (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    196430 9b9m:B (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    196431 9b9m:C (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    196432 9b9m:D (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    196433 9b9n:A (2.28) BS02 FE N/A GO:0016491 ... A0A0C7AN42 39220707
    196434 9b9n:B (2.28) BS02 FE N/A GO:0016491 ... A0A0C7AN42 39220707
    196435 9b9o:A (2.16) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    196436 9b9o:B (2.16) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    196437 9bap:A (2.88) BS02 ZN N/A GO:0003677 ... Q96W73 N/A
    196438 9baq:A (2.79) BS06 ZN N/A N/A Q96W73 N/A
    196439 9baz:A (2.76) BS02 ZN N/A N/A Q96W73 N/A
    196440 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    196441 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    196442 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    196443 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    196444 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    196445 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    196446 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    196447 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    196448 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    196449 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    196450 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 N/A
    196451 9bct:J (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    196452 9bct:M (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    196453 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    196454 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    196455 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    196456 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    196457 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    196458 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    196459 9bcu:J (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    196460 9bcu:M (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    196461 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    196462 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    196463 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    196464 9bfy:B (1.26) BS02 MG 3.6.5.2 N/A P01116 N/A
    196465 9bg1:A (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    196466 9bg1:B (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    196467 9biw:A (2.496) BS01 CA N/A N/A N/A N/A
    196468 9biw:A (2.496) BS02 CA N/A N/A N/A N/A
    196469 9biw:A (2.496) BS03 CA N/A N/A N/A N/A
    196470 9biw:A (2.496) BS04 CA N/A N/A N/A N/A
    196471 9biw:B (2.496) BS01 CA N/A N/A N/A N/A
    196472 9bkd:Q (2.6) BS02 ZN N/A N/A P62854 39117603
    196473 9bkd:f (2.6) BS02 MG N/A N/A P62269 39117603
    196474 9bkd:i (2.6) BS02 ZN N/A N/A P62273 39117603
    196475 9bkd:k (2.6) BS02 ZN N/A N/A P62979 39117603
    196476 9bkl:A (1.7) BS01 CO ? GO:0009055 ... P24297 N/A
    196477 9bkp:A (1.8) BS01 FE ? GO:0009055 ... P24297 N/A
    196478 9bkt:A (1.8) BS01 FE2 ? GO:0009055 ... P24297 N/A
    196479 9bln:Q (3.9) BS02 ZN N/A N/A P62854 39117603
    196480 9bln:i (3.9) BS02 ZN N/A N/A P62273 39117603
    196481 9bln:k (3.9) BS02 ZN N/A N/A P62979 39117603
    196482 9brv:A (2.6) BS02 ZN N/A N/A P0DTD1 39140055
    196483 9brv:B (2.6) BS03 ZN N/A N/A P0DTD1 39140055
    196484 9brw:A (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    196485 9brw:B (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    196486 9brw:C (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    196487 9brw:D (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    196488 9brx:AA (1.8) BS02 ZN N/A N/A P0DTC1 39140055
    196489 9buj:A (2.19) BS01 CA N/A N/A A0A833EL34 38935515
    196490 9bul:A (2.1) BS01 FE2 N/A GO:0003677 ... Q9X1T8 N/A
    196491 9c0j:A (3.17) BS03 MG N/A N/A A0AA43TDM1 39208082
    196492 9c0o:A (1.53) BS02 ZN N/A N/A Q9W352 39029460
    196493 9c0o:A (1.53) BS03 ZN N/A N/A Q9W352 39029460
    196494 9c0o:A (1.53) BS04 ZN N/A N/A Q9W352 39029460
    196495 9c11:B (1.95) BS02 CA N/A N/A P00644 N/A
    196496 9c3d:A (1.85) BS01 ZN N/A GO:0008800 ... C6W709 N/A
    196497 9c3d:A (1.85) BS02 ZN N/A GO:0008800 ... C6W709 N/A
    196498 9c4c:E (3.09) BS02 MN N/A N/A P54512 N/A
    196499 9c4c:E (3.09) BS03 MN N/A N/A P54512 N/A
    196500 9c4c:F (3.09) BS03 MN N/A N/A P54512 N/A
    196501 9c4c:F (3.09) BS04 MN N/A N/A P54512 N/A
    196502 9c4c:G (3.09) BS03 MN N/A N/A P54512 N/A
    196503 9c4c:G (3.09) BS04 MN N/A N/A P54512 N/A
    196504 9c4c:H (3.09) BS02 MN N/A N/A P54512 N/A
    196505 9c4c:H (3.09) BS03 MN N/A N/A P54512 N/A
    196506 9c4d:C (4.17) BS01 MN N/A N/A P54512 N/A
    196507 9c4d:C (4.17) BS02 MN N/A N/A P54512 N/A
    196508 9c4d:D (4.17) BS02 MN N/A N/A P54512 N/A
    196509 9c4d:D (4.17) BS03 MN N/A N/A P54512 N/A
    196510 9c4d:E (4.17) BS02 MN N/A N/A P54512 N/A
    196511 9c4d:E (4.17) BS03 MN N/A N/A P54512 N/A
    196512 9c4d:F (4.17) BS03 MN N/A N/A P54512 N/A
    196513 9c4d:F (4.17) BS04 MN N/A N/A P54512 N/A
    196514 9c4d:G (4.17) BS02 MN N/A N/A P54512 N/A
    196515 9c4d:G (4.17) BS03 MN N/A N/A P54512 N/A
    196516 9c4d:H (4.17) BS02 MN N/A N/A P54512 N/A
    196517 9c4d:H (4.17) BS03 MN N/A N/A P54512 N/A
    196518 9c4d:I (4.17) BS02 MN N/A N/A P54512 N/A
    196519 9c4d:I (4.17) BS03 MN N/A N/A P54512 N/A
    196520 9c4d:J (4.17) BS02 MN N/A N/A P54512 N/A
    196521 9c4d:J (4.17) BS03 MN N/A N/A P54512 N/A
    196522 9c4g:0 (2.53) BS02 ZN N/A N/A A0A2C6LJM0 39122144
    196523 9c4g:4 (2.53) BS01 ZN N/A N/A A0A2B7JUW7 39122144
    196524 9c4g:w (2.53) BS02 ZN N/A N/A A0A2B7I7B7 39122144
    196525 9c4g:z (2.53) BS02 ZN N/A N/A A0A2B7I771 39122144
    196526 9c4i:A (1.3) BS03 MN N/A GO:0005537 ... C0HK20 N/A
    196527 9c4i:A (1.3) BS04 CA N/A GO:0005537 ... C0HK20 N/A
    196528 9c4i:B (1.3) BS03 CA N/A GO:0005537 ... C0HK20 N/A
    196529 9c4i:B (1.3) BS04 MN N/A GO:0005537 ... C0HK20 N/A
    196530 9c4o:A (1.99) BS01 CA N/A GO:0009279 ... P76115 N/A
    196531 9c5e:A (-1.00) BS01 ZN N/A N/A Q7KTX7 39078678
    196532 9c5e:A (-1.00) BS02 ZN N/A N/A Q7KTX7 39078678
    196533 9c8u:A (3.1) BS01 ZN N/A N/A Q15910 N/A
    196534 9c8u:A (3.1) BS02 ZN N/A N/A Q15910 N/A
    196535 9c8u:A (3.1) BS03 ZN N/A N/A Q15910 N/A
    196536 9c8u:A (3.1) BS04 ZN N/A N/A Q15910 N/A
    196537 9c8u:A (3.1) BS05 ZN N/A N/A Q15910 N/A
    196538 9c8u:A (3.1) BS06 ZN N/A N/A Q15910 N/A
    196539 9c8u:A (3.1) BS07 ZN N/A N/A Q15910 N/A
    196540 9c8v:A (3.39) BS01 ZN N/A N/A P49642 N/A
    196541 9c8v:C (3.39) BS01 ZN N/A N/A P09884 N/A
    196542 9c8v:C (3.39) BS02 ZN N/A N/A P09884 N/A
    196543 9c9m:A (2.01) BS04 MG N/A N/A P12497 39066328
    196544 9c9m:A (2.01) BS05 MG N/A N/A P12497 39066328
    196545 9c9m:A (2.01) BS06 ZN N/A N/A P12497 39066328
    196546 9c9m:I (2.01) BS04 MG N/A N/A P12497 39066328
    196547 9c9m:I (2.01) BS05 MG N/A N/A P12497 39066328
    196548 9c9m:I (2.01) BS06 ZN N/A N/A P12497 39066328
    196549 9c9y:A (3.35) BS02 MN N/A N/A O95985 N/A
    196550 9c9y:A (3.35) BS03 MN N/A N/A O95985 N/A
    196551 9ca0:A (3.48) BS03 MN N/A N/A O95985 N/A
    196552 9ca1:A (3.26) BS03 MN N/A N/A O95985 N/A
    196553 9ca1:A (3.26) BS04 MN N/A N/A O95985 N/A
    196554 9ca2:A (2.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1932029
    196555 9cbf:A (2.26) BS02 ZN N/A N/A F1QCV2 N/A
    196556 9cbg:A (2.6) BS02 ZN N/A N/A F1QCV2 N/A
    196557 9cbh:A (2.8) BS02 ZN N/A N/A F1QCV2 N/A
    196558 9cbi:A (2.5) BS02 ZN N/A N/A F1QCV2 N/A
    196559 9cbj:A (2.48) BS02 ZN N/A N/A F1QCV2 N/A
    196560 9cbk:A (1.46) BS02 ZN N/A N/A A7YT55 N/A
    196561 9cbk:B (1.46) BS02 ZN N/A N/A A7YT55 N/A
    196562 9cbt:A (1.95) BS01 ZN N/A N/A Q9NTG7 N/A
    196563 9cbt:B (1.95) BS02 ZN N/A N/A Q9NTG7 N/A
    196564 9cc0:A (3.31) BS03 MG N/A N/A P36776 38979310
    196565 9cc0:B (3.31) BS02 MG N/A N/A P36776 38979310
    196566 9cc0:C (3.31) BS03 MG N/A N/A P36776 38979310
    196567 9cc3:D (3.23) BS02 MG N/A N/A P36776 38979310
    196568 9cer:P (4.7) BS02 ZN N/A N/A L1JXG4
    P0AEX9    		 39208796
    196569 9ces:P (3.28) BS04 ZN N/A N/A L1JXG4
    P0AEX9    		 39208796
    196570 9cet:P (3.0) BS04 ZN N/A N/A L1JXG4
    P0AEX9    		 39208796
    196571 9ceu:P (3.29) BS04 ZN N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196572 9cev:P (3.26) BS04 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196573 9cev:P (3.26) BS05 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196574 9cev:P (3.26) BS06 ZN N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196575 9cew:P (2.88) BS06 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196576 9cew:P (2.88) BS07 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196577 9cew:P (2.88) BS08 ZN N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196578 9cex:P (3.27) BS06 ZN N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196579 9cex:P (3.27) BS07 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196580 9cex:P (3.27) BS08 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196581 9cey:P (3.22) BS04 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196582 9cey:P (3.22) BS05 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196583 9cey:P (3.22) BS06 ZN N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196584 9cez:P (3.41) BS04 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196585 9cez:P (3.41) BS05 MG N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196586 9cez:P (3.41) BS06 ZN N/A N/A A0A0L0H5U9
    P0AEX9    		 39208796
    196587 9cf1:P (3.52) BS04 ZN N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    196588 9cf2:P (3.15) BS06 ZN N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    196589 9cf2:P (3.15) BS07 MG N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    196590 9cf3:P (3.2) BS04 ZN N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    196591 9cf3:P (3.2) BS05 MG N/A N/A A0A0B7NJM7
    P0AEX9    		 39208796
    196592 9cg5:3 (2.59) BS02 ZN N/A N/A A0A0E2L017 39222680
    196593 9cg5:4 (2.59) BS03 ZN N/A N/A P0A7N0 39222680
    196594 9cg6:3 (2.61) BS02 ZN N/A N/A A0A0E2L017 39222680
    196595 9cg6:4 (2.61) BS02 ZN N/A N/A P0A7N0 39222680
    196596 9cg7:3 (2.75) BS02 ZN N/A N/A A0A0E2L017 39222680
    196597 9cg7:4 (2.75) BS03 ZN N/A N/A P0A7N0 39222680
    196598 9cgt:A (2.5) BS05 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    196599 9cgt:A (2.5) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    196600 9chw:A (2.16) BS04 MG N/A N/A Q9Y253 39259676
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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