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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195801 8yhd:H (2.93) BS03 ZN N/A N/A N/A 39143216
    195802 8yhd:J (2.93) BS03 ZN N/A N/A N/A 39143216
    195803 8yhd:O (2.93) BS03 ZN N/A N/A N/A 39143216
    195804 8yhe:A (3.07) BS02 ZN N/A N/A N/A 39143216
    195805 8yhe:B (3.07) BS03 ZN N/A N/A N/A 39143216
    195806 8yhe:C (3.07) BS03 ZN N/A N/A N/A 39143216
    195807 8yhe:D (3.07) BS03 ZN N/A N/A N/A 39143216
    195808 8yhe:E (3.07) BS03 ZN N/A N/A N/A 39143216
    195809 8yhe:F (3.07) BS03 ZN N/A N/A N/A 39143216
    195810 8yhe:H (3.07) BS02 ZN N/A N/A N/A 39143216
    195811 8yhe:J (3.07) BS03 ZN N/A N/A N/A 39143216
    195812 8yhw:A (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    195813 8yhw:B (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    195814 8yhw:C (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    195815 8yhw:D (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    195816 8yib:A (2.27) BS02 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    195817 8yib:A (2.27) BS03 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    195818 8yib:B (2.27) BS03 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    195819 8yib:B (2.27) BS04 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    195820 8yj6:C (1.37) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195821 8yj7:A (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195822 8yj7:B (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195823 8yj7:C (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195824 8yj7:D (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195825 8yj8:A (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195826 8yj8:B (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    195827 8yjx:A (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    195828 8yjx:B (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    195829 8yk5:A (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    195830 8yk5:B (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    195831 8yk9:B (3.4) BS02 MG N/A N/A Q981B4 39077943
    195832 8yku:A (2.17) BS01 CA N/A N/A A0A232BM78 N/A
    195833 8yku:A (2.17) BS02 CA N/A N/A A0A232BM78 N/A
    195834 8yku:A (2.17) BS03 CA N/A N/A A0A232BM78 N/A
    195835 8yku:A (2.17) BS04 CA N/A N/A A0A232BM78 N/A
    195836 8yku:A (2.17) BS05 CA N/A N/A A0A232BM78 N/A
    195837 8yku:A (2.17) BS06 CA N/A N/A A0A232BM78 N/A
    195838 8yl9:A (2.75) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195839 8yl9:A (2.75) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195840 8yl9:A (2.75) BS03 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195841 8yl9:B (2.75) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195842 8yl9:B (2.75) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195843 8yl9:B (2.75) BS03 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195844 8yl9:I (2.75) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195845 8yl9:I (2.75) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195846 8yl9:I (2.75) BS03 MG 2.5.1.29
    2.5.1.81
    4.2.3.-    		 N/A A0A2Z6AQX7 38584136
    195847 8yla:A (1.3) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    195848 8yla:A (1.3) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    195849 8yla:B (1.3) BS01 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    195850 8yla:B (1.3) BS02 MG 2.5.1.29
    2.5.1.81
    4.2.3.176    		 N/A A1DN30 38584136
    195851 8ylc:A (2.30004) BS01 ZN 3.1.4.53 N/A Q08499 N/A
    195852 8ylc:B (2.30004) BS01 ZN 3.1.4.53 N/A Q08499 N/A
    195853 8yle:A (1.86) BS02 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    195854 8yle:A (1.86) BS03 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    195855 8yo4:C (3.2) BS03 MG N/A N/A N/A N/A
    195856 8yo4:D (3.2) BS03 MG N/A N/A N/A N/A
    195857 8yoo:LA (2.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    195858 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    195859 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    195860 8yoo:Lg (2.0) BS03 ZN N/A GO:0002181 ... P49207 38942792
    195861 8yoo:Lj (2.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    195862 8yoo:Lm (2.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    195863 8yoo:Lo (2.0) BS02 ZN N/A GO:0002181 ... P83881 38942792
    195864 8yoo:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    195865 8yoo:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    195866 8yoo:Sd (2.0) BS02 ZN N/A GO:0002181 ... P62273 38942792
    195867 8yoo:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62979 38942792
    195868 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    195869 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    195870 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    195871 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    195872 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    195873 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    195874 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    195875 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    195876 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    195877 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    195878 8you:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195879 8you:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195880 8you:A (1.8) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195881 8you:A (1.8) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195882 8you:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195883 8you:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195884 8you:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195885 8yp3:A (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    195886 8yp3:B (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    195887 8yp3:C (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    195888 8yp3:D (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    195889 8yrs:A (2.43) BS03 ZN N/A N/A P46063 N/A
    195890 8yrs:B (2.43) BS03 ZN N/A N/A P46063 N/A
    195891 8ys2:M (5.2) BS01 CA N/A N/A P98155 39127734
    195892 8ys2:M (5.2) BS02 CA N/A N/A P98155 39127734
    195893 8ys2:N (5.2) BS01 CA N/A N/A P98155 39127734
    195894 8ys2:N (5.2) BS02 CA N/A N/A P98155 39127734
    195895 8ys2:O (5.2) BS01 CA N/A N/A P98155 39127734
    195896 8ys2:O (5.2) BS02 CA N/A N/A P98155 39127734
    195897 8ys2:P (5.2) BS01 CA N/A N/A P98155 39127734
    195898 8ys2:P (5.2) BS02 CA N/A N/A P98155 39127734
    195899 8ys4:M (4.8) BS01 CA N/A N/A P98155 39127734
    195900 8ys4:N (4.8) BS01 CA N/A N/A P98155 39127734
    195901 8ys4:O (4.8) BS01 CA N/A N/A P98155 39127734
    195902 8ys4:P (4.8) BS01 CA N/A N/A P98155 39127734
    195903 8ys4:Q (4.8) BS01 CA N/A N/A P98155 39127734
    195904 8ys4:R (4.8) BS01 CA N/A N/A P98155 39127734
    195905 8ys4:S (4.8) BS01 CA N/A N/A P98155 39127734
    195906 8ys4:T (4.8) BS01 CA N/A N/A P98155 39127734
    195907 8yt5:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    195908 8yt5:A (1.6) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    195909 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    195910 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    195911 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    195912 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    195913 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    195914 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    195915 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    195916 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195917 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195918 8yu5:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195919 8yu5:A (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195920 8yu5:A (1.45) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195921 8yu5:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195922 8yu5:B (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195923 8yu6:A (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195924 8yu6:A (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195925 8yu6:A (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195926 8yu6:A (1.55) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195927 8yu6:B (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195928 8yu6:B (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195929 8yu6:B (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195930 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195931 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    195932 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195933 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195934 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195935 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    195936 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195937 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195938 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195939 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195940 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195941 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195942 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195943 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195944 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195945 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195946 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195947 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    195948 8yv8:K (3.0) BS03 ZN N/A N/A Q9BWT1 N/A
    195949 8yv8:K (3.0) BS04 ZN N/A N/A Q9BWT1 N/A
    195950 8yv8:K (3.0) BS05 ZN N/A N/A Q9BWT1 N/A
    195951 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    195952 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    195953 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    195954 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    195955 8z1r:A (1.82) BS01 MG N/A N/A G5EH03 N/A
    195956 8z1r:B (1.82) BS01 MG N/A N/A G5EH03 N/A
    195957 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    195958 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    195959 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    195960 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    195961 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    195962 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    195963 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    195964 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    195965 8z4j:B (2.97) BS02 ZN N/A N/A N/A 39143216
    195966 8z4j:C (2.97) BS03 ZN N/A N/A N/A 39143216
    195967 8z4j:D (2.97) BS03 ZN N/A N/A N/A 39143216
    195968 8z4j:E (2.97) BS03 ZN N/A N/A N/A 39143216
    195969 8z4j:H (2.97) BS02 ZN N/A N/A N/A 39143216
    195970 8z4l:A (2.85) BS03 ZN N/A N/A N/A 39143216
    195971 8z4l:B (2.85) BS03 ZN N/A N/A N/A 39143216
    195972 8z4l:C (2.85) BS03 ZN N/A N/A N/A 39143216
    195973 8z4l:E (2.85) BS03 ZN N/A N/A N/A 39143216
    195974 8z4l:F (2.85) BS03 ZN N/A N/A N/A 39143216
    195975 8z4l:G (2.85) BS02 ZN N/A N/A N/A 39143216
    195976 8z4l:H (2.85) BS02 ZN N/A N/A N/A 39143216
    195977 8z4l:J (2.85) BS03 ZN N/A N/A N/A 39143216
    195978 8z4q:A (1.68) BS01 FE N/A N/A N/A 39227380
    195979 8z4r:A (1.81) BS02 FE N/A N/A N/A 39227380
    195980 8z4s:A (1.93) BS02 FE N/A N/A N/A 39227380
    195981 8z5l:A (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195982 8z5l:A (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195983 8z5l:A (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195984 8z5l:B (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195985 8z5l:B (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195986 8z5l:B (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195987 8z5l:C (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195988 8z5l:C (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195989 8z5l:C (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195990 8z5l:D (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195991 8z5l:D (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195992 8z5l:D (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    195993 8z75:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195994 8z75:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195995 8z75:C (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195996 8z76:A (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195997 8z76:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195998 8z76:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    195999 8z76:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    196000 8z76:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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