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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195401 8xi4:P (3.4) BS01 CA N/A N/A P98155 39127734
    195402 8xi4:P (3.4) BS02 CA N/A N/A P98155 39127734
    195403 8xi5:M (3.4) BS01 CA N/A N/A P98155 39127734
    195404 8xi5:N (3.4) BS01 CA N/A N/A P98155 39127734
    195405 8xi5:O (3.4) BS01 CA N/A N/A P98155 39127734
    195406 8xi5:P (3.4) BS01 CA N/A N/A P98155 39127734
    195407 8xi5:Q (3.4) BS01 CA N/A N/A P98155 39127734
    195408 8xi5:R (3.4) BS01 CA N/A N/A P98155 39127734
    195409 8xi5:S (3.4) BS01 CA N/A N/A P98155 39127734
    195410 8xi5:T (3.4) BS01 CA N/A N/A P98155 39127734
    195411 8xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    195412 8xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    195413 8xif:A (1.39) BS01 MG 3.6.4.- N/A P04305 38914567
    195414 8xif:A (1.39) BS02 MG 3.6.4.- N/A P04305 38914567
    195415 8xig:A (1.65) BS01 MG 3.6.4.- N/A A0A7H0DN89 38914567
    195416 8xig:A (1.65) BS02 MG 3.6.4.- N/A A0A7H0DN89 38914567
    195417 8xim:A (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    195418 8xim:B (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    195419 8xim:C (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    195420 8xim:D (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    195421 8xj6:E (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    195422 8xj6:F (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    195423 8xjg:A (1.7) BS01 ZN N/A N/A A0A072FVI7 38211535
    195424 8xjg:A (1.7) BS02 ZN N/A N/A A0A072FVI7 38211535
    195425 8xkf:A (2.5) BS02 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    195426 8xkf:D (2.5) BS03 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    195427 8xku:B (3.2) BS02 ZN N/A N/A Q9SAJ3 39197452
    195428 8xku:R (3.2) BS03 ZN N/A N/A F4JYR0 39197452
    195429 8xku:R (3.2) BS04 ZN N/A N/A F4JYR0 39197452
    195430 8xkv:B (3.3) BS02 ZN N/A N/A Q9SAJ3 39197452
    195431 8xkv:R (3.3) BS03 ZN N/A N/A F4JYR0 39197452
    195432 8xkv:R (3.3) BS04 ZN N/A N/A F4JYR0 39197452
    195433 8xld:A (2.1) BS01 ZN ? GO:0006091 ... A0A8S0GSD4 N/A
    195434 8xlp:A (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    195435 8xlp:A (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    195436 8xlp:A (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    195437 8xlp:D (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    195438 8xlp:a (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    195439 8xlp:a (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    195440 8xlp:a (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    195441 8xlp:d (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    195442 8xm7:D (4.91) BS01 MG N/A GO:0003924 ... P84095 38857861
    195443 8xmb:A (3.4) BS02 MG N/A GO:0000418 ... Q9LQ02 N/A
    195444 8xmb:A (3.4) BS03 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195445 8xmb:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195446 8xmb:B (3.4) BS04 ZN N/A GO:0000418 ... Q9LK40 N/A
    195447 8xmb:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    195448 8xmb:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    195449 8xmb:I (3.4) BS02 ZN N/A GO:0000419 ... Q6NLH0 N/A
    195450 8xmb:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    195451 8xmc:A (3.1) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195452 8xmc:A (3.1) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    195453 8xmc:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195454 8xmc:A (3.1) BS07 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195455 8xmc:B (3.1) BS03 ZN N/A GO:0000418 ... Q9LK40 N/A
    195456 8xmc:C (3.1) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    195457 8xmc:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    195458 8xmc:J (3.1) BS01 ZN N/A GO:0000418 ... Q8LFJ6 N/A
    195459 8xmc:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    195460 8xmd:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195461 8xmd:A (3.4) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    195462 8xmd:A (3.4) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195463 8xmd:A (3.4) BS07 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195464 8xmd:B (3.4) BS03 ZN N/A GO:0000418 ... Q9LK40 N/A
    195465 8xmd:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    195466 8xmd:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    195467 8xmd:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    195468 8xme:A (3.1) BS03 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195469 8xme:A (3.1) BS04 MG N/A GO:0000418 ... Q9LQ02 N/A
    195470 8xme:A (3.1) BS05 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195471 8xme:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    195472 8xme:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    195473 8xme:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    195474 8xn2:A (2.79) BS01 ZN N/A N/A Q9BYF1 39013463
    195475 8xn3:A (2.64) BS01 ZN N/A N/A Q9BYF1 39013463
    195476 8xn5:A (2.87) BS01 ZN N/A N/A Q9BYF1 39013463
    195477 8xn6:A (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    195478 8xn6:B (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    195479 8xn8:A (1.95) BS02 MG 2.7.10.2 GO:0004672 ... P05480 N/A
    195480 8xnf:A (3.26) BS01 ZN N/A N/A Q9BYF1 39013463
    195481 8xnk:A (2.78) BS01 ZN N/A N/A Q9BYF1 39013463
    195482 8xom:A (3.05) BS08 MG N/A GO:0001409 ... O15439 38886124
    195483 8xoo:Q (1.84) BS05 MG ? GO:0005524 ... A0A6G5RIJ6 38501868
    195484 8xp5:A (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817    		 N/A
    195485 8xp5:B (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817    		 N/A
    195486 8xph:A (2.2) BS01 CA N/A N/A N/A N/A
    195487 8xph:A (2.2) BS02 CA N/A N/A N/A N/A
    195488 8xph:B (2.2) BS01 CA N/A N/A N/A N/A
    195489 8xph:B (2.2) BS02 CA N/A N/A N/A N/A
    195490 8xpk:A (2.0) BS03 CA N/A N/A N/A N/A
    195491 8xpk:A (2.0) BS04 CA N/A N/A N/A N/A
    195492 8xpk:B (2.0) BS04 CA N/A N/A N/A N/A
    195493 8xpk:B (2.0) BS05 CA N/A N/A N/A N/A
    195494 8xpn:A (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    195495 8xpn:B (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    195496 8xpn:C (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    195497 8xpt:A (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195498 8xpt:A (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195499 8xpt:A (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195500 8xpt:A (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195501 8xpt:B (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195502 8xpt:B (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195503 8xpt:B (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195504 8xpt:B (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195505 8xpt:C (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195506 8xpt:C (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195507 8xpt:C (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195508 8xpt:C (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195509 8xpt:D (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195510 8xpt:D (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195511 8xpt:D (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195512 8xpt:D (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    195513 8xqw:R (2.9) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    195514 8xqw:R (2.9) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    195515 8xqx:R (2.8) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    195516 8xqx:R (2.8) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    195517 8xr6:A (2.53) BS03 FE2 N/A GO:0005506 ... A0A222AI41 N/A
    195518 8xr6:D (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 N/A
    195519 8xr6:a (2.53) BS03 FE2 N/A GO:0005506 ... A0A222AI41 N/A
    195520 8xr6:d (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 N/A
    195521 8xrf:A (2.94) BS04 MG N/A N/A Q00942 N/A
    195522 8xrf:A (2.94) BS05 MG N/A N/A Q00942 N/A
    195523 8xrf:A (2.94) BS06 MG N/A N/A Q00942 N/A
    195524 8xrf:B (2.94) BS04 MG N/A N/A Q00942 N/A
    195525 8xrf:B (2.94) BS05 MG N/A N/A Q00942 N/A
    195526 8xrf:B (2.94) BS06 MG N/A N/A Q00942 N/A
    195527 8xri:A (2.92) BS04 MG N/A N/A Q00942 N/A
    195528 8xri:A (2.92) BS05 MG N/A N/A Q00942 N/A
    195529 8xri:B (2.92) BS05 MG N/A N/A Q00942 N/A
    195530 8xri:B (2.92) BS06 MG N/A N/A Q00942 N/A
    195531 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    195532 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    195533 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    195534 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    195535 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    195536 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    195537 8xru:A (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    195538 8xru:B (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    195539 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    195540 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    195541 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    195542 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    195543 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    195544 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    195545 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    195546 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    195547 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    195548 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    195549 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... N/A 38527679
    195550 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    195551 8xsf:A (2.16) BS01 ZN N/A N/A Q9BYF1 38850530
    195552 8xsj:A (2.61) BS01 ZN N/A N/A Q9BYF1 38850530
    195553 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    195554 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    195555 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    195556 8xsx:Lg (2.4) BS03 ZN N/A GO:0002181 ... P49207 38942792
    195557 8xsx:Lj (2.4) BS03 ZN N/A GO:0002181 ... P61927 38942792
    195558 8xsx:Lm (2.4) BS02 ZN N/A GO:0002181 ... P62987 38942792
    195559 8xsx:Lo (2.4) BS03 ZN N/A GO:0002181 ... P83881 38942792
    195560 8xsx:Lp (2.4) BS02 ZN N/A GO:0002181 ... P61513 38942792
    195561 8xsx:Sa (2.4) BS02 ZN N/A GO:0002181 ... P62854 38942792
    195562 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    195563 8xsy:Le (3.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    195564 8xsy:Lg (3.0) BS03 MG N/A GO:0002181 ... P49207 38942792
    195565 8xsy:Lg (3.0) BS04 ZN N/A GO:0002181 ... P49207 38942792
    195566 8xsy:Lj (3.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    195567 8xsy:Lm (3.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    195568 8xsy:Lo (3.0) BS03 ZN N/A GO:0002181 ... P83881 38942792
    195569 8xsy:Lp (3.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    195570 8xsy:SM (3.0) BS02 ZN N/A GO:0002181 ... P25398 38942792
    195571 8xsy:Sa (3.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    195572 8xsz:LA (3.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    195573 8xsz:Le (3.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    195574 8xsz:Lg (3.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    195575 8xsz:Lg (3.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    195576 8xsz:Lj (3.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    195577 8xsz:Lm (3.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    195578 8xsz:Lo (3.2) BS03 ZN N/A GO:0002181 ... P83881 38942792
    195579 8xsz:Lp (3.2) BS03 ZN N/A GO:0002181 ... P61513 38942792
    195580 8xsz:SI (3.2) BS02 MG N/A GO:0000462 ... P62241 38942792
    195581 8xsz:SI (3.2) BS03 MG N/A GO:0000462 ... P62241 38942792
    195582 8xsz:SM (3.2) BS02 ZN N/A GO:0002181 ... P25398 38942792
    195583 8xt0:LB (3.2) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    195584 8xt0:Lf (3.2) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    195585 8xt0:Lj (3.2) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    195586 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    195587 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    195588 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    195589 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    195590 8xt1:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    195591 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    195592 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    195593 8xt2:Lj (3.3) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    195594 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    195595 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    195596 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    195597 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    195598 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    195599 8xt3:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    195600 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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