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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195201 8x39:B (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    195202 8x3a:A (-1.00) BS01 CA ? GO:0000272 ... A3DK52 38501488
    195203 8x3a:A (-1.00) BS02 CA ? GO:0000272 ... A3DK52 38501488
    195204 8x3a:A (-1.00) BS03 CA ? GO:0000272 ... A3DK52 38501488
    195205 8x3a:A (-1.00) BS04 CA ? GO:0000272 ... A3DK52 38501488
    195206 8x3g:A (1.84) BS01 MN N/A N/A N/A 39033196
    195207 8x3g:A (1.84) BS02 MN N/A N/A N/A 39033196
    195208 8x3g:B (1.84) BS01 MN N/A N/A N/A 39033196
    195209 8x3g:B (1.84) BS02 MN N/A N/A N/A 39033196
    195210 8x3h:A (0.93) BS01 FE ? GO:0005576 ... P02789 N/A
    195211 8x3w:A (2.01) BS01 ZN N/A N/A O59487 39146930
    195212 8x3w:A (2.01) BS02 ZN N/A N/A O59487 39146930
    195213 8x3w:B (2.01) BS02 ZN N/A N/A O59487 39146930
    195214 8x41:A (2.35) BS03 ZN N/A N/A O59487 39146930
    195215 8x41:B (2.35) BS03 ZN N/A N/A O59487 39146930
    195216 8x44:A (2.6) BS02 ZN N/A N/A O59487 39146930
    195217 8x44:B (2.6) BS02 ZN N/A N/A O59487 39146930
    195218 8x46:A (2.2) BS02 ZN N/A N/A O59487 39146930
    195219 8x4l:A (2.6) BS01 ZN N/A N/A O59487 39146930
    195220 8x4l:B (2.6) BS02 ZN N/A N/A O59487 39146930
    195221 8x51:A (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    195222 8x51:B (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    195223 8x5j:A (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    195224 8x5j:B (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    195225 8x6m:A (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    195226 8x6m:B (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    195227 8x6z:A (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    195228 8x6z:A (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    195229 8x6z:B (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    195230 8x6z:B (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    195231 8x6z:C (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    195232 8x6z:D (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    195233 8x6z:E (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    195234 8x6z:E (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    195235 8x6z:F (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    195236 8x6z:F (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    195237 8x72:A (2.2) BS02 ZN 2.7.11.21 GO:0004672 ... P53350 N/A
    195238 8x77:C (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    195239 8x77:E (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    195240 8x77:F (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    195241 8x77:H (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    195242 8x7i:L (3.27) BS01 ZN N/A N/A Q8IYW5 N/A
    195243 8x7i:L (3.27) BS02 ZN N/A N/A Q8IYW5 N/A
    195244 8x7j:L (3.39) BS01 ZN N/A N/A Q8IYW5 N/A
    195245 8x7j:L (3.39) BS02 ZN N/A N/A Q8IYW5 N/A
    195246 8x7k:L (3.27) BS01 ZN N/A N/A Q8IYW5 N/A
    195247 8x7k:L (3.27) BS02 ZN N/A N/A Q8IYW5 N/A
    195248 8x8g:A (2.27) BS06 CA N/A N/A N/A 38938812
    195249 8x8q:F (3.14) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    195250 8x90:A (2.95) BS04 CA ? GO:0001540 ... O00555 38443561
    195251 8x90:B (2.95) BS01 CA ? N/A P54289 38443561
    195252 8x91:A (3.11) BS04 CA ? GO:0001540 ... O00555 38443561
    195253 8x91:B (3.11) BS01 CA ? N/A P54289 38443561
    195254 8x93:A (2.92) BS10 CA ? GO:0001540 ... O00555 38443561
    195255 8x93:B (2.92) BS01 CA ? N/A P54289 38443561
    195256 8x9d:A (2.11) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    195257 8x9e:A (2.5) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    195258 8x9h:A (2.2) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    195259 8xa9:A (2.32) BS03 CA 3.1.-.- N/A Q9BQP7 38471810
    195260 8xa9:A (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    195261 8xa9:B (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    195262 8xa9:B (2.32) BS05 CA 3.1.-.- N/A Q9BQP7 38471810
    195263 8xaw:A (2.73) BS02 MG N/A N/A N/A 38834762
    195264 8xaw:C (2.73) BS05 MG N/A N/A N/A 38834762
    195265 8xaw:D (2.73) BS04 MG N/A N/A N/A 38834762
    195266 8xaw:E (2.73) BS03 MG N/A N/A N/A 38834762
    195267 8xaw:F (2.73) BS02 MG N/A N/A N/A 38834762
    195268 8xax:C (2.92) BS05 MG N/A N/A N/A 38834762
    195269 8xax:E (2.92) BS02 MG N/A N/A N/A 38834762
    195270 8xax:F (2.92) BS02 MG N/A N/A N/A 38834762
    195271 8xay:A (2.81) BS02 MG N/A N/A N/A 38834762
    195272 8xay:D (2.81) BS04 MG N/A N/A N/A 38834762
    195273 8xay:E (2.81) BS03 MG N/A N/A N/A 38834762
    195274 8xay:F (2.81) BS02 MG N/A N/A N/A 38834762
    195275 8xbs:A (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    195276 8xbs:B (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    195277 8xc1:A (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    195278 8xc1:B (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    195279 8xdo:A (1.37) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195280 8xdo:B (1.37) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195281 8xdp:A (1.75) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195282 8xdp:B (1.75) BS02 MG N/A N/A A0A6B9TNK2 N/A
    195283 8xdq:A (1.77) BS01 MG N/A N/A N/A N/A
    195284 8xdq:B (1.77) BS01 MG N/A N/A N/A N/A
    195285 8xdr:A (1.83) BS01 MG N/A N/A N/A N/A
    195286 8xdr:B (1.83) BS01 MG N/A N/A N/A N/A
    195287 8xds:A (1.97) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195288 8xds:B (1.97) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195289 8xdt:A (2.65) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195290 8xdt:B (2.65) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195291 8xdu:A (1.92) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195292 8xdu:B (1.92) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195293 8xdv:A (2.32) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195294 8xdv:B (2.32) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195295 8xdy:A (2.2) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195296 8xdy:B (2.2) BS02 MG N/A N/A A0A6B9TNK2 N/A
    195297 8xe0:A (2.2) BS02 MG N/A N/A A0A6B9TNK2 N/A
    195298 8xe0:B (2.2) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195299 8xe2:A (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195300 8xe2:B (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195301 8xe2:C (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195302 8xe2:D (2.43) BS01 MG N/A N/A A0A6B9TNK2 N/A
    195303 8xe3:A (1.72) BS01 MG N/A N/A A0A077EWA5 N/A
    195304 8xe3:B (1.72) BS01 MG N/A N/A A0A077EWA5 N/A
    195305 8xe4:A (1.96) BS01 MG N/A N/A A0A077EWA5 N/A
    195306 8xe4:B (1.96) BS01 MG N/A N/A A0A077EWA5 N/A
    195307 8xe4:C (1.96) BS02 MG N/A N/A A0A077EWA5 N/A
    195308 8xe4:D (1.96) BS02 MG N/A N/A A0A077EWA5 N/A
    195309 8xe5:A (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    195310 8xe5:B (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    195311 8xe5:C (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    195312 8xe5:D (2.07) BS01 MG N/A N/A A0A077EWA5 N/A
    195313 8xe7:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.286    		 N/A Q8IXJ6 38647411
    195314 8xf0:C (2.5) BS01 MG N/A N/A N/A 38238241
    195315 8xf0:E (2.5) BS01 MG N/A N/A N/A 38238241
    195316 8xf0:F (2.5) BS01 MG N/A N/A N/A 38238241
    195317 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    195318 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    195319 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    195320 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    195321 8xfm:A (2.6) BS02 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 N/A
    195322 8xfq:A (2.25) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195323 8xfq:A (2.25) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195324 8xfq:A (2.25) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195325 8xfq:A (2.25) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195326 8xfq:A (2.25) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195327 8xfq:A (2.25) BS11 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195328 8xfr:A (2.0) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195329 8xfr:A (2.0) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195330 8xfr:A (2.0) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195331 8xfr:A (2.0) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195332 8xfr:A (2.0) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195333 8xfr:A (2.0) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195334 8xfr:A (2.0) BS11 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    195335 8xfv:A (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195336 8xfv:B (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195337 8xfv:C (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195338 8xfv:D (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195339 8xfv:E (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195340 8xfv:F (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195341 8xfv:G (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195342 8xfv:H (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195343 8xfv:I (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195344 8xfv:J (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195345 8xfv:X (3.13) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195346 8xga:A (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195347 8xga:B (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195348 8xga:C (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195349 8xga:D (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195350 8xga:E (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195351 8xga:F (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195352 8xga:G (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195353 8xga:H (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195354 8xga:I (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195355 8xga:J (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195356 8xga:K (3.537) BS01 ZN 2.3.2.5 N/A Q9NXS2 38817193
    195357 8xgb:B (3.24) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195358 8xgc:2 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    195359 8xgc:4 (3.7) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 38448592
    195360 8xgc:5 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 38448592
    195361 8xgc:6 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 38448592
    195362 8xgc:7 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    195363 8xgc:8 (3.7) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 38448592
    195364 8xgc:8 (3.7) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 38448592
    195365 8xgt:A (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195366 8xgt:B (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195367 8xgt:C (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195368 8xgt:D (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195369 8xgt:E (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195370 8xgt:F (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195371 8xgt:G (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195372 8xgt:H (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195373 8xgt:I (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195374 8xgt:J (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195375 8xgt:K (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195376 8xgt:L (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195377 8xgy:A (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195378 8xgy:B (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195379 8xgy:C (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195380 8xgy:D (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195381 8xgy:E (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195382 8xgy:F (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195383 8xgy:G (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195384 8xgy:H (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195385 8xgy:I (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195386 8xgy:J (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195387 8xgy:K (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195388 8xgy:L (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    195389 8xho:A (2.5) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0016787 ... A0A1T4KK94 N/A
    195390 8xho:B (2.5) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0016787 ... A0A1T4KK94 N/A
    195391 8xho:B (2.5) BS02 CA 3.1.1.101
    3.1.1.74    		 GO:0016787 ... A0A1T4KK94 N/A
    195392 8xhu:A (2.4) BS01 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    195393 8xhu:B (2.4) BS01 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    195394 8xhu:C (2.4) BS01 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    195395 8xi4:M (3.4) BS01 CA N/A N/A P98155 39127734
    195396 8xi4:M (3.4) BS02 CA N/A N/A P98155 39127734
    195397 8xi4:N (3.4) BS01 CA N/A N/A P98155 39127734
    195398 8xi4:N (3.4) BS02 CA N/A N/A P98155 39127734
    195399 8xi4:O (3.4) BS01 CA N/A N/A P98155 39127734
    195400 8xi4:O (3.4) BS02 CA N/A N/A P98155 39127734
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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