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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    195001 8wqx:K (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195002 8wqx:L (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195003 8wqx:M (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195004 8wqx:N (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195005 8wqx:O (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195006 8wqx:P (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195007 8wqx:Q (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195008 8wqx:R (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195009 8wqx:S (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195010 8wqx:T (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195011 8wqx:U (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195012 8wqx:V (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195013 8wqx:W (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195014 8wqx:X (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195015 8wqy:A (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195016 8wqy:B (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195017 8wqy:C (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195018 8wqy:D (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195019 8wqy:E (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195020 8wqy:F (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195021 8wqy:G (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195022 8wqy:H (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195023 8wqy:I (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195024 8wqy:J (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195025 8wqy:K (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195026 8wqy:L (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195027 8wqy:M (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195028 8wqy:N (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195029 8wqy:O (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195030 8wqy:P (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195031 8wqy:Q (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195032 8wqy:R (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195033 8wqy:S (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195034 8wqy:T (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195035 8wqy:U (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195036 8wqy:V (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195037 8wqy:W (3.0) BS01 FE N/A N/A A0A084EX36 38641862
    195038 8wr0:A (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195039 8wr0:B (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195040 8wr0:C (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195041 8wr0:D (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195042 8wr0:E (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195043 8wr0:F (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195044 8wr0:G (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195045 8wr0:H (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195046 8wr0:I (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195047 8wr0:J (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195048 8wr0:K (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195049 8wr0:L (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195050 8wr0:M (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195051 8wr0:N (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195052 8wr0:O (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195053 8wr0:P (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195054 8wr0:Q (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195055 8wr0:R (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195056 8wr0:S (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195057 8wr0:T (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195058 8wr0:U (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195059 8wr0:V (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195060 8wr0:W (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195061 8wr0:X (3.1) BS01 FE N/A N/A A0A084EX36 38641862
    195062 8wrx:A (1.45) BS01 ZN N/A N/A N/A 38726868
    195063 8wt6:A (2.5) BS05 MG N/A N/A A0A2X3M8B0 38926616
    195064 8wt6:C (2.5) BS05 MG N/A N/A A0A2X3M8B0 38926616
    195065 8wt7:A (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    195066 8wt7:C (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    195067 8wt8:A (2.9) BS06 MG N/A N/A A0A2X3M8B0 38926616
    195068 8wt9:B (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    195069 8wt9:D (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    195070 8wtb:B (2.9) BS01 ZN ? GO:0005507 ... P37569 38625935
    195071 8wtb:D (2.9) BS01 ZN ? GO:0005507 ... P37569 38625935
    195072 8wtc:B (2.8) BS01 ZN ? GO:0005507 ... P37569 38625935
    195073 8wtc:D (2.8) BS01 ZN ? GO:0005507 ... P37569 38625935
    195074 8wug:A (1.7) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    195075 8wv4:A (3.3) BS01 CA N/A N/A P02741 38935342
    195076 8wv4:A (3.3) BS02 CA N/A N/A P02741 38935342
    195077 8wv4:B (3.3) BS01 CA N/A N/A P02741 38935342
    195078 8wv4:B (3.3) BS02 CA N/A N/A P02741 38935342
    195079 8wv4:C (3.3) BS01 CA N/A N/A P02741 38935342
    195080 8wv4:C (3.3) BS02 CA N/A N/A P02741 38935342
    195081 8wv4:D (3.3) BS01 CA N/A N/A P02741 38935342
    195082 8wv4:D (3.3) BS02 CA N/A N/A P02741 38935342
    195083 8wv4:E (3.3) BS01 CA N/A N/A P02741 38935342
    195084 8wv4:E (3.3) BS02 CA N/A N/A P02741 38935342
    195085 8wv5:A (3.5) BS01 CA N/A N/A P02741 38935342
    195086 8wv5:A (3.5) BS02 CA N/A N/A P02741 38935342
    195087 8wv5:B (3.5) BS01 CA N/A N/A P02741 38935342
    195088 8wv5:B (3.5) BS02 CA N/A N/A P02741 38935342
    195089 8wv5:C (3.5) BS01 CA N/A N/A P02741 38935342
    195090 8wv5:C (3.5) BS02 CA N/A N/A P02741 38935342
    195091 8wv5:D (3.5) BS01 CA N/A N/A P02741 38935342
    195092 8wv5:D (3.5) BS02 CA N/A N/A P02741 38935342
    195093 8wv5:E (3.5) BS01 CA N/A N/A P02741 38935342
    195094 8wv5:E (3.5) BS02 CA N/A N/A P02741 38935342
    195095 8wv5:F (3.5) BS01 CA N/A N/A P02741 38935342
    195096 8wv5:F (3.5) BS02 CA N/A N/A P02741 38935342
    195097 8wv5:G (3.5) BS01 CA N/A N/A P02741 38935342
    195098 8wv5:G (3.5) BS02 CA N/A N/A P02741 38935342
    195099 8wv5:H (3.5) BS01 CA N/A N/A P02741 38935342
    195100 8wv5:H (3.5) BS02 CA N/A N/A P02741 38935342
    195101 8wv5:I (3.5) BS01 CA N/A N/A P02741 38935342
    195102 8wv5:I (3.5) BS02 CA N/A N/A P02741 38935342
    195103 8wv5:J (3.5) BS01 CA N/A N/A P02741 38935342
    195104 8wv5:J (3.5) BS02 CA N/A N/A P02741 38935342
    195105 8wve:A (2.729) BS03 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    195106 8wve:B (2.729) BS05 MG 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    195107 8wwd:A (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    195108 8wwd:A (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    195109 8wwd:A (2.3) BS03 ZN N/A N/A A8LPS1 38709871
    195110 8wwd:A (2.3) BS04 ZN N/A N/A A8LPS1 38709871
    195111 8wwd:B (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    195112 8wwd:B (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    195113 8wwd:B (2.3) BS03 ZN N/A N/A A8LPS1 38709871
    195114 8wwd:C (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    195115 8wwd:C (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    195116 8wwd:D (2.3) BS01 ZN N/A N/A A8LPS1 38709871
    195117 8wwd:D (2.3) BS02 ZN N/A N/A A8LPS1 38709871
    195118 8wwu:A (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195119 8wwu:A (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195120 8wwu:A (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195121 8wwu:B (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195122 8wwu:B (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195123 8wwu:B (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195124 8wwu:C (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195125 8wwu:C (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195126 8wwu:C (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195127 8wwu:D (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195128 8wwu:D (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195129 8wwu:D (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195130 8wwu:E (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195131 8wwu:E (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195132 8wwu:E (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195133 8wwu:F (2.0) BS02 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195134 8wwu:F (2.0) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195135 8wwu:F (2.0) BS04 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195136 8wwv:A (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195137 8wwv:A (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195138 8wwv:A (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195139 8wwv:B (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195140 8wwv:B (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195141 8wwv:B (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195142 8wwv:C (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195143 8wwv:C (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195144 8wwv:C (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195145 8wwv:D (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195146 8wwv:D (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195147 8wwv:D (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195148 8wwv:E (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195149 8wwv:E (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195150 8wwv:E (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195151 8wwv:F (2.3) BS03 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195152 8wwv:F (2.3) BS04 MN 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195153 8wwv:F (2.3) BS05 MG 6.3.1.2 GO:0000166 ... A0A7Y1Q2L1 N/A
    195154 8wxw:A (1.86) BS02 ZN N/A N/A Q76NL8 N/A
    195155 8wxz:A (2.3) BS02 ZN N/A N/A Q76NL8 N/A
    195156 8wy5:C (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    195157 8wy5:D (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    195158 8wyt:A (2.7) BS02 ZN N/A N/A Q76NL8 N/A
    195159 8wyu:A (3.2) BS01 ZN N/A N/A Q76NL8 N/A
    195160 8wyx:A (3.5) BS01 ZN N/A N/A Q76NL8 N/A
    195161 8wyy:A (3.1) BS01 ZN N/A N/A Q76NL8 N/A
    195162 8wzc:A (1.925) BS02 MG N/A N/A O15037 39167961
    195163 8wzc:A (1.925) BS03 MG N/A N/A O15037 39167961
    195164 8wzn:A (1.8) BS01 ZN N/A N/A O60260 N/A
    195165 8wzn:A (1.8) BS02 ZN N/A N/A O60260 N/A
    195166 8wzn:A (1.8) BS03 ZN N/A N/A O60260 N/A
    195167 8wzn:A (1.8) BS04 ZN N/A N/A O60260 N/A
    195168 8wzn:A (1.8) BS05 ZN N/A N/A O60260 N/A
    195169 8wzn:A (1.8) BS06 ZN N/A N/A O60260 N/A
    195170 8wzn:A (1.8) BS07 ZN N/A N/A O60260 N/A
    195171 8wzn:A (1.8) BS08 ZN N/A N/A O60260 N/A
    195172 8wzo:A (2.25) BS01 ZN N/A N/A O60260 N/A
    195173 8wzo:A (2.25) BS02 ZN N/A N/A O60260 N/A
    195174 8wzo:A (2.25) BS03 ZN N/A N/A O60260 N/A
    195175 8wzo:A (2.25) BS04 ZN N/A N/A O60260 N/A
    195176 8wzo:A (2.25) BS05 ZN N/A N/A O60260 N/A
    195177 8wzo:A (2.25) BS06 ZN N/A N/A O60260 N/A
    195178 8wzo:A (2.25) BS07 ZN N/A N/A O60260 N/A
    195179 8wzo:A (2.25) BS08 ZN N/A N/A O60260 N/A
    195180 8x01:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    195181 8x01:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    195182 8x1n:A (3.31) BS01 ZN ? GO:0005615 ... P02771 38678117
    195183 8x1z:A (2.62) BS02 MG N/A N/A P12497 38977798
    195184 8x1z:C (2.62) BS02 MG N/A N/A P12497 38977798
    195185 8x20:C (2.7) BS03 MG N/A N/A P12497 38977798
    195186 8x21:A (2.33) BS03 MG N/A N/A P12497 38977798
    195187 8x21:C (2.33) BS03 MG N/A N/A P12497 38977798
    195188 8x22:A (2.31) BS03 MG N/A N/A P12497 38977798
    195189 8x22:C (2.31) BS03 MG N/A N/A P12497 38977798
    195190 8x2h:A (2.9) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    195191 8x2i:A (2.5) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    195192 8x2l:B (2.99) BS04 MG 1.-.-.- GO:0005515 ... P04839 38355798
    195193 8x37:B (1.98) BS04 MG 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    195194 8x39:A (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    195195 8x39:A (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    195196 8x39:A (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    195197 8x39:A (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    195198 8x39:B (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    195199 8x39:B (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    195200 8x39:B (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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