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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194801 8wlo:E (2.62) BS01 ZN N/A GO:0006508 ... N/A 38591877
    194802 8wlr:A (3.12) BS01 ZN N/A GO:0006508 ... N/A 38591877
    194803 8wlv:A (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    194804 8wlv:B (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    194805 8wlv:C (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    194806 8wlv:D (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    194807 8wlw:A (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    194808 8wlw:B (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    194809 8wlw:C (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    194810 8wlw:D (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    194811 8wlx:A (1.562) BS01 ZN N/A N/A I7G9Z0 N/A
    194812 8wlx:B (1.562) BS01 ZN N/A N/A I7G9Z0 N/A
    194813 8wm4:A (2.93) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    194814 8wm4:A (2.93) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    194815 8wm4:A (2.93) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    194816 8wmc:A (2.9) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    194817 8wmc:A (2.9) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    194818 8wmc:A (2.9) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    194819 8wmg:A (1.97) BS04 MN ? GO:0030246 ... P02866 N/A
    194820 8wmg:A (1.97) BS05 CA ? GO:0030246 ... P02866 N/A
    194821 8wmg:B (1.97) BS01 MN ? GO:0030246 ... P02866 N/A
    194822 8wmg:B (1.97) BS02 CA ? GO:0030246 ... P02866 N/A
    194823 8wmi:A (3.53) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    194824 8wmi:A (3.53) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    194825 8wmi:A (3.53) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    194826 8wmk:A (2.17) BS03 MN ? GO:0030246 ... P02866 N/A
    194827 8wmk:A (2.17) BS04 CA ? GO:0030246 ... P02866 N/A
    194828 8wmk:B (2.17) BS01 MN ? GO:0030246 ... P02866 N/A
    194829 8wmk:B (2.17) BS02 CA ? GO:0030246 ... P02866 N/A
    194830 8wml:A (2.86) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    194831 8wml:A (2.86) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    194832 8wms:A (2.4) BS02 ZN N/A N/A Q96T88 N/A
    194833 8wms:A (2.4) BS03 ZN N/A N/A Q96T88 N/A
    194834 8wms:A (2.4) BS04 ZN N/A N/A Q96T88 N/A
    194835 8wms:A (2.4) BS05 ZN N/A N/A Q96T88 N/A
    194836 8wmy:A (1.91) BS02 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    194837 8wmy:A (1.91) BS03 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    194838 8wmy:B (1.91) BS02 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    194839 8wmy:B (1.91) BS03 MG 3.6.1.41 GO:0000166 ... A0A4U7IGH6 N/A
    194840 8wnf:A (1.9) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    194841 8wng:A (1.92) BS02 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    194842 8wni:A (1.95) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    194843 8wnj:A (1.78) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    194844 8wo2:A (2.34) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    194845 8wo3:A (2.2) BS01 ZN 6.1.1.5 GO:0000049 ... P56456 38246751
    194846 8woq:A (2.85) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    194847 8woq:A (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    194848 8woq:B (2.85) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    194849 8woq:B (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    194850 8wor:A (2.66) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    194851 8wor:A (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    194852 8wor:B (2.66) BS01 ZN ? GO:0016020 ... Q9NXL6 38378654
    194853 8wor:B (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    194854 8wos:A (3.37) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    194855 8wos:B (3.37) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    194856 8wot:A (3.18) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    194857 8wot:B (3.18) BS04 ZN ? GO:0016020 ... Q9NXL6 38378654
    194858 8wox:A (2.75) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... G1TEF4 38112468
    194859 8woy:A (3.14) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... G1TEF4 38112468
    194860 8woz:A (3.25) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... G1TEF4 38112468
    194861 8wp8:A (2.89) BS01 ZN N/A N/A Q9BYF1 N/A
    194862 8wpe:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    194863 8wpf:A (3.0) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    194864 8wpg:A (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    194865 8wpg:B (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    194866 8wpk:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    194867 8wpu:A (3.1) BS02 CA ? GO:0004930 ... P41180 37919470
    194868 8wpu:B (3.1) BS03 CA ? GO:0004930 ... P41180 37919470
    194869 8wpv:A (2.059) BS01 FE N/A N/A A0A084EX36 38641862
    194870 8wpv:A (2.059) BS02 FE N/A N/A A0A084EX36 38641862
    194871 8wpv:A (2.059) BS03 FE N/A N/A A0A084EX36 38641862
    194872 8wpv:A (2.059) BS04 FE N/A N/A A0A084EX36 38641862
    194873 8wq9:A (1.97) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    194874 8wq9:A (1.97) BS04 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    194875 8wq9:B (1.97) BS03 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    194876 8wq9:B (1.97) BS04 ZN 3.5.2.2 GO:0004157 ... Q9I676 38056157
    194877 8wqa:I (3.39) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194878 8wqa:I (3.39) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194879 8wqa:I (3.39) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194880 8wqa:J (3.39) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194881 8wqa:J (3.39) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194882 8wqb:E (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194883 8wqb:E (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194884 8wqb:E (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194885 8wqb:I (3.37) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194886 8wqb:I (3.37) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194887 8wqb:I (3.37) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194888 8wqc:F (3.54) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194889 8wqc:F (3.54) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194890 8wqc:F (3.54) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194891 8wqc:J (3.54) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194892 8wqc:J (3.54) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194893 8wqc:J (3.54) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194894 8wqe:I (3.38) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194895 8wqe:I (3.38) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194896 8wqe:I (3.38) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194897 8wqe:J (3.38) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194898 8wqe:J (3.38) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194899 8wqe:J (3.38) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194900 8wqf:E (3.27) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194901 8wqf:E (3.27) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194902 8wqf:E (3.27) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194903 8wqf:I (3.27) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194904 8wqf:I (3.27) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194905 8wqf:I (3.27) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194906 8wqg:F (4.09) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194907 8wqg:F (4.09) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194908 8wqg:F (4.09) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194909 8wqg:J (4.09) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194910 8wqg:J (4.09) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194911 8wqg:J (4.09) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194912 8wqh:B (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194913 8wqh:B (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194914 8wqh:B (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194915 8wqh:J (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194916 8wqh:J (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194917 8wqh:J (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0008270 ... P62877 38670995
    194918 8wql:D1 (3.5) BS08 FE2 N/A N/A N/A N/A
    194919 8wql:DD (3.5) BS08 FE2 N/A N/A N/A N/A
    194920 8wql:DE (3.5) BS08 FE2 N/A N/A N/A N/A
    194921 8wql:K1 (3.5) BS03 CA N/A N/A N/A N/A
    194922 8wql:KD (3.5) BS03 CA N/A N/A N/A N/A
    194923 8wql:KE (3.5) BS03 CA N/A N/A N/A N/A
    194924 8wql:U1 (3.5) BS01 CA N/A N/A N/A N/A
    194925 8wql:UD (3.5) BS01 CA N/A N/A N/A N/A
    194926 8wql:UE (3.5) BS01 CA N/A N/A N/A N/A
    194927 8wql:V1 (3.5) BS02 CA N/A N/A N/A N/A
    194928 8wql:VD (3.5) BS02 CA N/A N/A N/A N/A
    194929 8wql:VE (3.5) BS02 CA N/A N/A N/A N/A
    194930 8wql:d1 (3.5) BS06 FE2 N/A N/A N/A N/A
    194931 8wql:dD (3.5) BS06 FE2 N/A N/A N/A N/A
    194932 8wql:dE (3.5) BS06 FE2 N/A N/A N/A N/A
    194933 8wql:k1 (3.5) BS03 CA N/A N/A N/A N/A
    194934 8wql:kD (3.5) BS03 CA N/A N/A N/A N/A
    194935 8wql:kE (3.5) BS03 CA N/A N/A N/A N/A
    194936 8wql:u1 (3.5) BS01 CA N/A N/A N/A N/A
    194937 8wql:uD (3.5) BS01 CA N/A N/A N/A N/A
    194938 8wql:uE (3.5) BS01 CA N/A N/A N/A N/A
    194939 8wql:v1 (3.5) BS02 CA N/A N/A N/A N/A
    194940 8wql:vD (3.5) BS02 CA N/A N/A N/A N/A
    194941 8wql:vE (3.5) BS02 CA N/A N/A N/A N/A
    194942 8wqm:A (1.796) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    194943 8wqu:A (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194944 8wqu:B (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194945 8wqu:C (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194946 8wqu:D (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194947 8wqu:E (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194948 8wqu:F (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194949 8wqu:G (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194950 8wqu:H (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194951 8wqu:I (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194952 8wqu:J (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194953 8wqu:K (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194954 8wqu:L (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194955 8wqu:M (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194956 8wqu:N (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194957 8wqu:O (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194958 8wqu:P (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194959 8wqu:Q (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194960 8wqu:R (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194961 8wqu:S (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194962 8wqu:T (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194963 8wqu:U (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194964 8wqu:V (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194965 8wqu:W (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194966 8wqu:X (2.8) BS01 FE N/A N/A A0A084EX36 38641862
    194967 8wqv:A (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194968 8wqv:B (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194969 8wqv:C (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194970 8wqv:D (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194971 8wqv:E (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194972 8wqv:F (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194973 8wqv:G (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194974 8wqv:H (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194975 8wqv:I (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194976 8wqv:J (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194977 8wqv:K (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194978 8wqv:L (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194979 8wqv:M (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194980 8wqv:N (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194981 8wqv:O (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194982 8wqv:P (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194983 8wqv:Q (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194984 8wqv:R (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194985 8wqv:S (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194986 8wqv:T (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194987 8wqv:U (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194988 8wqv:V (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194989 8wqv:W (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194990 8wqv:X (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194991 8wqx:A (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194992 8wqx:B (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194993 8wqx:C (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194994 8wqx:D (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194995 8wqx:E (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194996 8wqx:F (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194997 8wqx:G (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194998 8wqx:H (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    194999 8wqx:I (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    195000 8wqx:J (3.2) BS01 FE N/A N/A A0A084EX36 38641862
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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