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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194401 8w9e:E (3.6) BS03 ZN ? GO:0000118 ... Q04779 38598631
    194402 8w9e:E (3.6) BS04 ZN ? GO:0000118 ... Q04779 38598631
    194403 8w9e:F (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194404 8w9e:F (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194405 8w9f:B (4.4) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    194406 8w9f:E (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194407 8w9f:E (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194408 8w9f:E (4.4) BS03 ZN ? GO:0000118 ... Q04779 38598631
    194409 8w9f:F (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194410 8w9f:F (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194411 8w9i:A (2.45) BS02 MG N/A N/A Q9I502 N/A
    194412 8w9i:B (2.45) BS02 MG N/A N/A Q9I502 N/A
    194413 8w9i:B (2.45) BS03 MG N/A N/A Q9I502 N/A
    194414 8w9m:C (3.1) BS02 MG ? GO:0005524 ... Q8YZ76 38457518
    194415 8w9m:D (3.1) BS03 MG ? GO:0005524 ... Q8YZ75 38457518
    194416 8w9o:A (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    194417 8w9o:A (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    194418 8w9o:B (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    194419 8w9o:B (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    194420 8w9v:A (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    194421 8w9v:A (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    194422 8w9v:A (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    194423 8w9v:B (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    194424 8w9v:B (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    194425 8w9v:B (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    194426 8w9z:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    194427 8w9z:C (3.0) BS01 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    194428 8w9z:G (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    194429 8w9z:L (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    194430 8wa0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    194431 8wa0:C (2.7) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    194432 8wa0:G (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    194433 8wa0:L (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    194434 8wa1:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    194435 8wa1:C (2.8) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    194436 8wa1:G (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    194437 8wa1:L (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    194438 8wa2:A (3.0) BS31 CA ? N/A A8J9H7 38552612
    194439 8wa2:B (3.0) BS40 CA ? N/A A8J9H7 38552612
    194440 8wa2:C (3.0) BS18 CA ? N/A A8J9H7 38552612
    194441 8wa2:D (3.0) BS25 CA ? N/A A8J9H7 38552612
    194442 8wa2:E (3.0) BS32 CA ? N/A A8J9H7 38552612
    194443 8wa2:F (3.0) BS34 CA ? N/A A8J9H7 38552612
    194444 8wa5:A (2.51) BS02 MG 7.2.2.19 GO:0000166 ... P19156 38072058
    194445 8wa7:A (1.63) BS02 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    194446 8wa7:B (1.63) BS03 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    194447 8wa8:A (1.48) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    194448 8wa9:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    194449 8wa9:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    194450 8waa:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    194451 8waa:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    194452 8wai:A (1.45) BS01 ZN N/A N/A A0A1D1V463 N/A
    194453 8wai:A (1.45) BS02 ZN N/A N/A A0A1D1V463 N/A
    194454 8wai:B (1.45) BS01 ZN N/A N/A A0A1D1V463 N/A
    194455 8wai:B (1.45) BS02 ZN N/A N/A A0A1D1V463 N/A
    194456 8wak:0 (5.47) BS01 ZN ? GO:0000082 ... P51948 38127763
    194457 8wak:2 (5.47) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194458 8wak:2 (5.47) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194459 8wak:2 (5.47) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194460 8wak:3 (5.47) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194461 8wak:3 (5.47) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194462 8wak:R (5.47) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194463 8wak:U (5.47) BS01 ZN ? GO:0001113 ... P29083 38127763
    194464 8wak:o (5.47) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194465 8wak:o (5.47) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194466 8wak:o (5.47) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194467 8wak:p (5.47) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194468 8wak:q (5.47) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194469 8wak:w (5.47) BS01 ZN ? GO:0000428 ... P60899 38127763
    194470 8wak:w (5.47) BS02 ZN ? GO:0000428 ... P60899 38127763
    194471 8wak:x (5.47) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194472 8wak:z (5.47) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194473 8wal:0 (8.52) BS01 ZN ? GO:0000082 ... P51948 38127763
    194474 8wal:2 (8.52) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194475 8wal:2 (8.52) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194476 8wal:2 (8.52) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194477 8wal:3 (8.52) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194478 8wal:3 (8.52) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194479 8wal:R (8.52) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194480 8wal:U (8.52) BS01 ZN ? GO:0001113 ... P29083 38127763
    194481 8wal:o (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194482 8wal:o (8.52) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194483 8wal:o (8.52) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194484 8wal:p (8.52) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194485 8wal:q (8.52) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194486 8wal:w (8.52) BS01 ZN ? GO:0000428 ... P60899 38127763
    194487 8wal:w (8.52) BS02 ZN ? GO:0000428 ... P60899 38127763
    194488 8wal:x (8.52) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194489 8wal:z (8.52) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194490 8wam:A (3.23) BS02 MG ? GO:0005524 ... Q84TH5 38050355
    194491 8wam:B (3.23) BS03 MG ? GO:0005524 ... Q84TH5 38050355
    194492 8wan:0 (6.07) BS01 ZN ? GO:0000082 ... P51948 38127763
    194493 8wan:2 (6.07) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194494 8wan:2 (6.07) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194495 8wan:2 (6.07) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194496 8wan:3 (6.07) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194497 8wan:3 (6.07) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194498 8wan:R (6.07) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194499 8wan:U (6.07) BS01 ZN ? GO:0001113 ... P29083 38127763
    194500 8wan:o (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194501 8wan:o (6.07) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194502 8wan:o (6.07) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194503 8wan:p (6.07) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194504 8wan:q (6.07) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194505 8wan:w (6.07) BS01 ZN ? GO:0000428 ... P60899 38127763
    194506 8wan:w (6.07) BS02 ZN ? GO:0000428 ... P60899 38127763
    194507 8wan:x (6.07) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194508 8wan:z (6.07) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194509 8wao:0 (6.4) BS01 ZN ? GO:0000082 ... P51948 38127763
    194510 8wao:2 (6.4) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194511 8wao:2 (6.4) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194512 8wao:2 (6.4) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194513 8wao:3 (6.4) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194514 8wao:3 (6.4) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194515 8wao:R (6.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194516 8wao:U (6.4) BS01 ZN ? GO:0001113 ... P29083 38127763
    194517 8wao:o (6.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194518 8wao:o (6.4) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194519 8wao:o (6.4) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194520 8wao:p (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194521 8wao:q (6.4) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194522 8wao:w (6.4) BS01 ZN ? GO:0000428 ... P60899 38127763
    194523 8wao:w (6.4) BS02 ZN ? GO:0000428 ... P60899 38127763
    194524 8wao:x (6.4) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194525 8wao:z (6.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194526 8wap:0 (5.85) BS01 ZN ? GO:0000082 ... P51948 38127763
    194527 8wap:2 (5.85) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194528 8wap:2 (5.85) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194529 8wap:2 (5.85) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194530 8wap:3 (5.85) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194531 8wap:3 (5.85) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194532 8wap:R (5.85) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194533 8wap:U (5.85) BS01 ZN ? GO:0001113 ... P29083 38127763
    194534 8wap:o (5.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194535 8wap:o (5.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194536 8wap:o (5.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194537 8wap:p (5.85) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194538 8wap:q (5.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194539 8wap:w (5.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    194540 8wap:w (5.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    194541 8wap:x (5.85) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194542 8wap:z (5.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194543 8waq:0 (6.29) BS01 ZN ? GO:0000082 ... P51948 38127763
    194544 8waq:2 (6.29) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194545 8waq:2 (6.29) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194546 8waq:2 (6.29) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194547 8waq:3 (6.29) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194548 8waq:3 (6.29) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194549 8waq:R (6.29) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194550 8waq:U (6.29) BS01 ZN ? GO:0001113 ... P29083 38127763
    194551 8waq:o (6.29) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194552 8waq:o (6.29) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194553 8waq:o (6.29) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194554 8waq:p (6.29) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194555 8waq:q (6.29) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194556 8waq:w (6.29) BS01 ZN ? GO:0000428 ... P60899 38127763
    194557 8waq:w (6.29) BS02 ZN ? GO:0000428 ... P60899 38127763
    194558 8waq:x (6.29) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194559 8waq:z (6.29) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194560 8war:0 (7.2) BS01 ZN ? GO:0000082 ... P51948 38127763
    194561 8war:2 (7.2) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194562 8war:2 (7.2) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194563 8war:2 (7.2) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194564 8war:3 (7.2) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194565 8war:3 (7.2) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194566 8war:R (7.2) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194567 8war:U (7.2) BS01 ZN ? GO:0001113 ... P29083 38127763
    194568 8war:o (7.2) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194569 8war:o (7.2) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194570 8war:o (7.2) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194571 8war:p (7.2) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194572 8war:q (7.2) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194573 8war:w (7.2) BS01 ZN ? GO:0000428 ... P60899 38127763
    194574 8war:w (7.2) BS02 ZN ? GO:0000428 ... P60899 38127763
    194575 8war:x (7.2) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194576 8war:z (7.2) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194577 8was:0 (6.13) BS01 ZN ? GO:0000082 ... P51948 38127763
    194578 8was:2 (6.13) BS01 ZN ? GO:0000438 ... Q13888 38127763
    194579 8was:2 (6.13) BS02 ZN ? GO:0000438 ... Q13888 38127763
    194580 8was:2 (6.13) BS03 ZN ? GO:0000438 ... Q13888 38127763
    194581 8was:3 (6.13) BS01 ZN ? GO:0000438 ... Q13889 38127763
    194582 8was:3 (6.13) BS02 ZN ? GO:0000438 ... Q13889 38127763
    194583 8was:R (6.13) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    194584 8was:U (6.13) BS01 ZN ? GO:0001113 ... P29083 38127763
    194585 8was:o (6.13) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194586 8was:o (6.13) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194587 8was:o (6.13) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194588 8was:p (6.13) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    194589 8was:q (6.13) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194590 8was:w (6.13) BS01 ZN ? GO:0000428 ... P60899 38127763
    194591 8was:w (6.13) BS02 ZN ? GO:0000428 ... P60899 38127763
    194592 8was:x (6.13) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    194593 8was:z (6.13) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    194594 8wat:o (2.82) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194595 8wat:o (2.82) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194596 8wat:o (2.82) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    194597 8wat:p (2.82) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    194598 8wat:q (2.82) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    194599 8wat:w (2.82) BS01 ZN ? GO:0000428 ... P60899 38127763
    194600 8wat:w (2.82) BS02 ZN ? GO:0000428 ... P60899 38127763

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218