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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    194201 8w4m:A (2.18) BS04 ZN N/A N/A P0DOX5 38938812
    194202 8w4m:A (2.18) BS05 ZN N/A N/A P0DOX5 38938812
    194203 8w4m:A (2.18) BS06 ZN N/A N/A P0DOX5 38938812
    194204 8w4m:A (2.18) BS07 ZN N/A N/A P0DOX5 38938812
    194205 8w4n:A (3.1) BS03 CA N/A N/A N/A 38938812
    194206 8w4q:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    194207 8w4q:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    194208 8w4r:A (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    194209 8w4r:B (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    194210 8w4s:A (1.848) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    194211 8w4t:A (2.199) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    194212 8w51:5 (2.4) BS02 ZN N/A N/A P0A7Q6 N/A
    194213 8w59:A (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    194214 8w59:A (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    194215 8w59:B (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    194216 8w59:B (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    194217 8w5a:A (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    194218 8w5a:A (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    194219 8w5a:B (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    194220 8w5a:B (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    194221 8w5s:A (2.1162) BS01 CA N/A N/A P20073 N/A
    194222 8w5s:A (2.1162) BS02 CA N/A N/A P20073 N/A
    194223 8w5s:A (2.1162) BS03 CA N/A N/A P20073 N/A
    194224 8w5s:A (2.1162) BS04 CA N/A N/A P20073 N/A
    194225 8w5s:A (2.1162) BS05 CA N/A N/A P20073 N/A
    194226 8w5s:A (2.1162) BS06 CA N/A N/A P20073 N/A
    194227 8w5s:A (2.1162) BS07 CA N/A N/A P20073 N/A
    194228 8w5s:B (2.1162) BS01 CA N/A N/A P20073 N/A
    194229 8w5s:B (2.1162) BS02 CA N/A N/A P20073 N/A
    194230 8w5s:B (2.1162) BS03 CA N/A N/A P20073 N/A
    194231 8w5s:B (2.1162) BS04 CA N/A N/A P20073 N/A
    194232 8w5s:B (2.1162) BS05 CA N/A N/A P20073 N/A
    194233 8w5s:B (2.1162) BS06 CA N/A N/A P20073 N/A
    194234 8w5s:B (2.1162) BS07 CA N/A N/A P20073 N/A
    194235 8w5s:B (2.1162) BS08 CA N/A N/A P20073 N/A
    194236 8w5s:C (2.1162) BS01 CA N/A N/A P20073 N/A
    194237 8w5s:C (2.1162) BS02 CA N/A N/A P20073 N/A
    194238 8w5s:C (2.1162) BS03 CA N/A N/A P20073 N/A
    194239 8w5s:C (2.1162) BS04 CA N/A N/A P20073 N/A
    194240 8w5s:C (2.1162) BS05 CA N/A N/A P20073 N/A
    194241 8w5s:C (2.1162) BS06 CA N/A N/A P20073 N/A
    194242 8w5s:C (2.1162) BS07 CA N/A N/A P20073 N/A
    194243 8w5s:C (2.1162) BS08 CA N/A N/A P20073 N/A
    194244 8w5s:C (2.1162) BS09 CA N/A N/A P20073 N/A
    194245 8w5s:C (2.1162) BS10 CA N/A N/A P20073 N/A
    194246 8w5s:C (2.1162) BS11 CA N/A N/A P20073 N/A
    194247 8w6c:A (2.7) BS01 NA ? GO:0005515 ... Q13183 38552027
    194248 8w6c:A (2.7) BS02 NA ? GO:0005515 ... Q13183 38552027
    194249 8w6c:B (2.7) BS03 NA ? GO:0005515 ... Q13183 38552027
    194250 8w6c:B (2.7) BS04 NA ? GO:0005515 ... Q13183 38552027
    194251 8w6d:A (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    194252 8w6d:B (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    194253 8w6h:A (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    194254 8w6h:B (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    194255 8w6m:A (2.501) BS01 FE N/A N/A A0A084EX36 38641862
    194256 8w6n:A (3.2) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    194257 8w6o:A (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    194258 8w6o:A (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    194259 8w6o:B (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    194260 8w6o:B (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    194261 8w6p:A (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    194262 8w6p:A (1.91) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    194263 8w6p:B (1.91) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    194264 8w6p:B (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    194265 8w6q:A (2.101) BS01 FE N/A N/A A0A084EX36 38641862
    194266 8w6q:A (2.101) BS02 FE N/A N/A A0A084EX36 38641862
    194267 8w6q:A (2.101) BS03 FE N/A N/A A0A084EX36 38641862
    194268 8w6q:A (2.101) BS04 FE N/A N/A A0A084EX36 38641862
    194269 8w6q:A (2.101) BS05 FE N/A N/A A0A084EX36 38641862
    194270 8w6q:A (2.101) BS06 FE N/A N/A A0A084EX36 38641862
    194271 8w6q:A (2.101) BS07 FE N/A N/A A0A084EX36 38641862
    194272 8w6q:A (2.101) BS08 FE N/A N/A A0A084EX36 38641862
    194273 8w6q:A (2.101) BS09 FE N/A N/A A0A084EX36 38641862
    194274 8w6r:A (1.95) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    194275 8w6r:A (1.95) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    194276 8w6s:A (2.099) BS01 FE N/A N/A A0A084EX36 38641862
    194277 8w6s:A (2.099) BS02 FE N/A N/A A0A084EX36 38641862
    194278 8w6s:A (2.099) BS03 FE N/A N/A A0A084EX36 38641862
    194279 8w6s:A (2.099) BS04 FE N/A N/A A0A084EX36 38641862
    194280 8w6s:A (2.099) BS05 FE N/A N/A A0A084EX36 38641862
    194281 8w6s:A (2.099) BS06 FE N/A N/A A0A084EX36 38641862
    194282 8w6u:A (2.099) BS01 FE N/A N/A A0A084EX36 38641862
    194283 8w6u:A (2.099) BS02 FE N/A N/A A0A084EX36 38641862
    194284 8w6u:A (2.099) BS03 FE N/A N/A A0A084EX36 38641862
    194285 8w6u:A (2.099) BS04 FE N/A N/A A0A084EX36 38641862
    194286 8w6u:A (2.099) BS05 FE N/A N/A A0A084EX36 38641862
    194287 8w6u:A (2.099) BS06 FE N/A N/A A0A084EX36 38641862
    194288 8w6u:A (2.099) BS07 FE N/A N/A A0A084EX36 38641862
    194289 8w6u:A (2.099) BS08 FE N/A N/A A0A084EX36 38641862
    194290 8w6v:A (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    194291 8w6v:B (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    194292 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    194293 8w6y:A (2.502) BS01 FE N/A N/A A0A084EX36 38641862
    194294 8w6y:A (2.502) BS02 FE N/A N/A A0A084EX36 38641862
    194295 8w6y:A (2.502) BS03 FE N/A N/A A0A084EX36 38641862
    194296 8w71:A (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    194297 8w71:B (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    194298 8w73:A (2.601) BS01 FE N/A N/A A0A084EX36 38641862
    194299 8w73:A (2.601) BS02 FE N/A N/A A0A084EX36 38641862
    194300 8w73:A (2.601) BS03 FE N/A N/A A0A084EX36 38641862
    194301 8w74:A (2.5) BS01 FE N/A N/A A0A084EX36 38641862
    194302 8w74:A (2.5) BS02 FE N/A N/A A0A084EX36 38641862
    194303 8w74:A (2.5) BS03 FE N/A N/A A0A084EX36 38641862
    194304 8w74:A (2.5) BS04 FE N/A N/A A0A084EX36 38641862
    194305 8w79:A (2.697) BS01 FE N/A N/A A0A084EX36 38641862
    194306 8w79:A (2.697) BS02 FE N/A N/A A0A084EX36 38641862
    194307 8w79:A (2.697) BS03 FE N/A N/A A0A084EX36 38641862
    194308 8w7b:A (2.7) BS01 FE N/A N/A A0A084EX36 38641862
    194309 8w7b:A (2.7) BS02 FE N/A N/A A0A084EX36 38641862
    194310 8w7b:A (2.7) BS03 FE N/A N/A A0A084EX36 38641862
    194311 8w7b:A (2.7) BS04 FE N/A N/A A0A084EX36 38641862
    194312 8w7b:A (2.7) BS05 FE N/A N/A A0A084EX36 38641862
    194313 8w7m:2 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    194314 8w7m:4 (4.12) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    194315 8w7m:5 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    194316 8w7m:6 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    194317 8w7m:7 (4.12) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    194318 8w7o:A (2.399) BS01 FE N/A N/A A0A084EX36 38641862
    194319 8w7o:A (2.399) BS02 FE N/A N/A A0A084EX36 38641862
    194320 8w7o:A (2.399) BS03 FE N/A N/A A0A084EX36 38641862
    194321 8w7o:A (2.399) BS04 FE N/A N/A A0A084EX36 38641862
    194322 8w7q:A (2.1) BS01 FE N/A N/A A0A084EX36 38641862
    194323 8w7t:A (2.499) BS01 FE N/A N/A A0A084EX36 38641862
    194324 8w7t:A (2.499) BS02 FE N/A N/A A0A084EX36 38641862
    194325 8w7u:A (2.502) BS01 FE N/A N/A A0A084EX36 38641862
    194326 8w7v:A (2.805) BS01 FE N/A N/A A0A084EX36 38641862
    194327 8w7x:A (2.2) BS01 ZN N/A N/A N/A N/A
    194328 8w7x:B (2.2) BS01 ZN N/A N/A N/A N/A
    194329 8w7x:C (2.2) BS01 ZN N/A N/A N/A N/A
    194330 8w7x:D (2.2) BS01 ZN N/A N/A N/A N/A
    194331 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    194332 8w8e:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    194333 8w8e:A (3.9) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    194334 8w8e:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    194335 8w8e:C (3.9) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    194336 8w8e:I (3.9) BS01 ZN ? GO:0000428 ... P60899 38816438
    194337 8w8e:I (3.9) BS02 ZN ? GO:0000428 ... P60899 38816438
    194338 8w8e:L (3.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    194339 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    194340 8w8f:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    194341 8w8f:A (4.0) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    194342 8w8f:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    194343 8w8f:C (4.0) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    194344 8w8f:I (4.0) BS01 ZN ? GO:0000428 ... P60899 38816438
    194345 8w8f:I (4.0) BS02 ZN ? GO:0000428 ... P60899 38816438
    194346 8w8f:L (4.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    194347 8w8l:A (1.824) BS02 MG N/A N/A Q9I502 N/A
    194348 8w8l:A (1.824) BS03 MG N/A N/A Q9I502 N/A
    194349 8w8l:A (1.824) BS04 MG N/A N/A Q9I502 N/A
    194350 8w8l:A (1.824) BS05 MG N/A N/A Q9I502 N/A
    194351 8w8l:A (1.824) BS06 MG N/A N/A Q9I502 N/A
    194352 8w8l:A (1.824) BS07 MG N/A N/A Q9I502 N/A
    194353 8w8l:A (1.824) BS08 MG N/A N/A Q9I502 N/A
    194354 8w8l:B (1.824) BS02 MG N/A N/A Q9I502 N/A
    194355 8w8l:B (1.824) BS03 MG N/A N/A Q9I502 N/A
    194356 8w8n:B (2.693) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    194357 8w8n:D (2.693) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    194358 8w8n:D (2.693) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    194359 8w8n:D (2.693) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    194360 8w8n:D (2.693) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    194361 8w8n:F (2.693) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    194362 8w8o:B (2.512) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    194363 8w8o:D (2.512) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    194364 8w8o:D (2.512) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    194365 8w8o:D (2.512) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    194366 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    194367 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    194368 8w8p:B (3.165) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    194369 8w8p:D (3.165) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    194370 8w8p:D (3.165) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    194371 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    194372 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    194373 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    194374 8w91:b (2.12) BS01 FE N/A N/A A0A173CSP7 N/A
    194375 8w91:b (2.12) BS02 FE N/A N/A A0A173CSP7 N/A
    194376 8w92:A (2.12) BS01 FE N/A N/A P02794 N/A
    194377 8w92:A (2.12) BS02 FE N/A N/A P02794 N/A
    194378 8w93:b (2.09) BS01 FE N/A N/A A0A173CSP7 N/A
    194379 8w93:b (2.09) BS02 FE N/A N/A A0A173CSP7 N/A
    194380 8w94:b (2.3) BS01 FE N/A N/A A0A173CSP7 N/A
    194381 8w94:b (2.3) BS02 FE N/A N/A A0A173CSP7 N/A
    194382 8w94:b (2.3) BS03 FE N/A N/A A0A173CSP7 N/A
    194383 8w95:b (2.03) BS01 FE N/A N/A A0A173CSP7 N/A
    194384 8w95:b (2.03) BS02 FE N/A N/A A0A173CSP7 N/A
    194385 8w95:b (2.03) BS03 FE N/A N/A A0A173CSP7 N/A
    194386 8w9c:B (3.3) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    194387 8w9c:E (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194388 8w9c:E (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194389 8w9c:E (3.3) BS03 ZN ? GO:0000118 ... Q04779 38598631
    194390 8w9c:F (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194391 8w9c:F (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194392 8w9d:B (3.9) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    194393 8w9d:E (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194394 8w9d:E (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194395 8w9d:E (3.9) BS03 ZN ? GO:0000118 ... Q04779 38598631
    194396 8w9d:F (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194397 8w9d:F (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    194398 8w9e:B (3.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    194399 8w9e:E (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    194400 8w9e:E (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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