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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    193801 8vtw:2G (2.35) BS03 MG N/A N/A Q5SHQ0 39039256
    193802 8vtw:2Q (2.35) BS03 MG N/A N/A P60489 39039256
    193803 8vtw:2Q (2.35) BS04 MG N/A N/A P60489 39039256
    193804 8vtw:2R (2.35) BS02 MG N/A N/A Q9Z9H5 39039256
    193805 8vtw:2V (2.35) BS02 MG N/A N/A P60492 39039256
    193806 8vtw:2V (2.35) BS03 MG N/A N/A P60492 39039256
    193807 8vtw:2W (2.35) BS02 MG N/A N/A Q5SHP3 39039256
    193808 8vtw:2W (2.35) BS03 MG N/A N/A Q5SHP3 39039256
    193809 8vtw:2Y (2.35) BS02 ZN N/A N/A Q5SHP9 39039256
    193810 8vtw:2f (2.35) BS02 MG N/A N/A Q5SLP8 39039256
    193811 8vtw:2j (2.35) BS02 MG N/A N/A Q5SHN7 39039256
    193812 8vtw:2k (2.35) BS02 MG N/A N/A P80376 39039256
    193813 8vtw:2l (2.35) BS02 MG N/A N/A Q5SHN3 39039256
    193814 8vtw:2n (2.35) BS02 ZN N/A N/A P0DOY6 39039256
    193815 8vtw:2t (2.35) BS02 MG N/A N/A P80380 39039256
    193816 8vtx:10 (2.4) BS04 MG N/A N/A P60493 39039256
    193817 8vtx:10 (2.4) BS05 MG N/A N/A P60493 39039256
    193818 8vtx:10 (2.4) BS06 MG N/A N/A P60493 39039256
    193819 8vtx:11 (2.4) BS03 MG N/A N/A P60494 39039256
    193820 8vtx:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    193821 8vtx:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    193822 8vtx:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    193823 8vtx:14 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    193824 8vtx:15 (2.4) BS02 MG N/A N/A P80339 39039256
    193825 8vtx:15 (2.4) BS03 ZN N/A N/A P80339 39039256
    193826 8vtx:16 (2.4) BS02 MG N/A N/A P35871 39039256
    193827 8vtx:16 (2.4) BS03 MG N/A N/A P35871 39039256
    193828 8vtx:16 (2.4) BS04 ZN N/A N/A P35871 39039256
    193829 8vtx:17 (2.4) BS02 MG N/A N/A P80340 39039256
    193830 8vtx:17 (2.4) BS03 MG N/A N/A P80340 39039256
    193831 8vtx:17 (2.4) BS04 MG N/A N/A P80340 39039256
    193832 8vtx:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    193833 8vtx:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    193834 8vtx:19 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    193835 8vtx:1D (2.4) BS03 MG N/A N/A P60405 39039256
    193836 8vtx:1D (2.4) BS04 MG N/A N/A P60405 39039256
    193837 8vtx:1D (2.4) BS05 MG N/A N/A P60405 39039256
    193838 8vtx:1D (2.4) BS06 MG N/A N/A P60405 39039256
    193839 8vtx:1D (2.4) BS07 MG N/A N/A P60405 39039256
    193840 8vtx:1D (2.4) BS08 MG N/A N/A P60405 39039256
    193841 8vtx:1D (2.4) BS09 MG N/A N/A P60405 39039256
    193842 8vtx:1D (2.4) BS10 MG N/A N/A P60405 39039256
    193843 8vtx:1D (2.4) BS11 MG N/A N/A P60405 39039256
    193844 8vtx:1D (2.4) BS12 MG N/A N/A P60405 39039256
    193845 8vtx:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    193846 8vtx:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    193847 8vtx:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    193848 8vtx:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    193849 8vtx:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    193850 8vtx:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    193851 8vtx:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    193852 8vtx:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    193853 8vtx:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    193854 8vtx:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    193855 8vtx:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    193856 8vtx:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    193857 8vtx:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    193858 8vtx:1F (2.4) BS11 MG N/A N/A Q5SHN9 39039256
    193859 8vtx:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    193860 8vtx:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    193861 8vtx:1N (2.4) BS02 MG N/A N/A P60488 39039256
    193862 8vtx:1N (2.4) BS03 MG N/A N/A P60488 39039256
    193863 8vtx:1N (2.4) BS04 MG N/A N/A P60488 39039256
    193864 8vtx:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    193865 8vtx:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    193866 8vtx:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    193867 8vtx:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    193868 8vtx:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    193869 8vtx:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    193870 8vtx:1P (2.4) BS06 MG N/A N/A Q5SHQ7 39039256
    193871 8vtx:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    193872 8vtx:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    193873 8vtx:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    193874 8vtx:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    193875 8vtx:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    193876 8vtx:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    193877 8vtx:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    193878 8vtx:1R (2.4) BS04 MG N/A N/A Q9Z9H5 39039256
    193879 8vtx:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    193880 8vtx:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    193881 8vtx:1U (2.4) BS02 MG N/A N/A P60491 39039256
    193882 8vtx:1U (2.4) BS03 MG N/A N/A P60491 39039256
    193883 8vtx:1U (2.4) BS04 MG N/A N/A P60491 39039256
    193884 8vtx:1U (2.4) BS05 MG N/A N/A P60491 39039256
    193885 8vtx:1U (2.4) BS06 MG N/A N/A P60491 39039256
    193886 8vtx:1U (2.4) BS07 MG N/A N/A P60491 39039256
    193887 8vtx:1U (2.4) BS08 MG N/A N/A P60491 39039256
    193888 8vtx:1U (2.4) BS09 MG N/A N/A P60491 39039256
    193889 8vtx:1V (2.4) BS02 MG N/A N/A P60492 39039256
    193890 8vtx:1V (2.4) BS03 MG N/A N/A P60492 39039256
    193891 8vtx:1V (2.4) BS04 MG N/A N/A P60492 39039256
    193892 8vtx:1V (2.4) BS05 MG N/A N/A P60492 39039256
    193893 8vtx:1V (2.4) BS06 MG N/A N/A P60492 39039256
    193894 8vtx:1V (2.4) BS07 MG N/A N/A P60492 39039256
    193895 8vtx:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    193896 8vtx:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    193897 8vtx:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    193898 8vtx:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    193899 8vtx:1W (2.4) BS06 MG N/A N/A Q5SHP3 39039256
    193900 8vtx:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    193901 8vtx:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    193902 8vtx:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    193903 8vtx:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    193904 8vtx:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    193905 8vtx:1Y (2.4) BS03 ZN N/A N/A Q5SHP9 39039256
    193906 8vtx:1Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    193907 8vtx:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    193908 8vtx:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    193909 8vtx:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    193910 8vtx:1k (2.4) BS02 MG N/A N/A P80376 39039256
    193911 8vtx:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    193912 8vtx:1m (2.4) BS04 MG N/A N/A P80377 39039256
    193913 8vtx:1n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    193914 8vtx:1t (2.4) BS02 MG N/A N/A P80380 39039256
    193915 8vtx:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    193916 8vtx:24 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    193917 8vtx:25 (2.4) BS02 ZN N/A N/A P80339 39039256
    193918 8vtx:26 (2.4) BS02 MG N/A N/A P35871 39039256
    193919 8vtx:26 (2.4) BS03 ZN N/A N/A P35871 39039256
    193920 8vtx:27 (2.4) BS02 MG N/A N/A P80340 39039256
    193921 8vtx:27 (2.4) BS03 MG N/A N/A P80340 39039256
    193922 8vtx:28 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    193923 8vtx:29 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    193924 8vtx:2D (2.4) BS03 MG N/A N/A P60405 39039256
    193925 8vtx:2D (2.4) BS04 MG N/A N/A P60405 39039256
    193926 8vtx:2D (2.4) BS05 MG N/A N/A P60405 39039256
    193927 8vtx:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    193928 8vtx:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    193929 8vtx:2F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    193930 8vtx:2F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    193931 8vtx:2F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    193932 8vtx:2G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    193933 8vtx:2Q (2.4) BS05 MG N/A N/A P60489 39039256
    193934 8vtx:2Q (2.4) BS06 MG N/A N/A P60489 39039256
    193935 8vtx:2T (2.4) BS03 MG N/A N/A P60490 39039256
    193936 8vtx:2U (2.4) BS02 MG N/A N/A P60491 39039256
    193937 8vtx:2V (2.4) BS02 MG N/A N/A P60492 39039256
    193938 8vtx:2W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    193939 8vtx:2W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    193940 8vtx:2X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    193941 8vtx:2Y (2.4) BS02 ZN N/A N/A Q5SHP9 39039256
    193942 8vtx:2Z (2.4) BS03 MG N/A N/A Q5SHZ1 39039256
    193943 8vtx:2d (2.4) BS02 MG N/A N/A P80373 39039256
    193944 8vtx:2e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    193945 8vtx:2f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    193946 8vtx:2k (2.4) BS02 MG N/A N/A P80376 39039256
    193947 8vtx:2l (2.4) BS02 MG N/A N/A Q5SHN3 39039256
    193948 8vtx:2l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    193949 8vtx:2l (2.4) BS04 MG N/A N/A Q5SHN3 39039256
    193950 8vtx:2n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    193951 8vtx:2q (2.4) BS02 MG N/A N/A P0DOY7 39039256
    193952 8vtx:2q (2.4) BS03 MG N/A N/A P0DOY7 39039256
    193953 8vtx:2r (2.4) BS02 MG N/A N/A Q5SLQ0 39039256
    193954 8vtx:2t (2.4) BS02 MG N/A N/A P80380 39039256
    193955 8vty:10 (2.6) BS03 MG N/A N/A P60493 39039256
    193956 8vty:10 (2.6) BS04 MG N/A N/A P60493 39039256
    193957 8vty:10 (2.6) BS05 MG N/A N/A P60493 39039256
    193958 8vty:11 (2.6) BS02 MG N/A N/A P60494 39039256
    193959 8vty:13 (2.6) BS03 MG N/A N/A Q5SHQ6 39039256
    193960 8vty:13 (2.6) BS04 MG N/A N/A Q5SHQ6 39039256
    193961 8vty:14 (2.6) BS02 ZN N/A N/A Q5SJE1 39039256
    193962 8vty:15 (2.6) BS02 MG N/A N/A P80339 39039256
    193963 8vty:15 (2.6) BS03 MG N/A N/A P80339 39039256
    193964 8vty:15 (2.6) BS04 MG N/A N/A P80339 39039256
    193965 8vty:15 (2.6) BS05 MG N/A N/A P80339 39039256
    193966 8vty:15 (2.6) BS06 ZN N/A N/A P80339 39039256
    193967 8vty:16 (2.6) BS02 ZN N/A N/A P35871 39039256
    193968 8vty:17 (2.6) BS02 MG N/A N/A P80340 39039256
    193969 8vty:17 (2.6) BS03 MG N/A N/A P80340 39039256
    193970 8vty:17 (2.6) BS04 MG N/A N/A P80340 39039256
    193971 8vty:17 (2.6) BS05 MG N/A N/A P80340 39039256
    193972 8vty:18 (2.6) BS02 MG N/A N/A Q5SKU1 39039256
    193973 8vty:18 (2.6) BS03 MG N/A N/A Q5SKU1 39039256
    193974 8vty:19 (2.6) BS02 ZN N/A N/A Q5SHR2 39039256
    193975 8vty:1D (2.6) BS03 MG N/A N/A P60405 39039256
    193976 8vty:1D (2.6) BS04 MG N/A N/A P60405 39039256
    193977 8vty:1D (2.6) BS05 MG N/A N/A P60405 39039256
    193978 8vty:1D (2.6) BS06 MG N/A N/A P60405 39039256
    193979 8vty:1D (2.6) BS07 MG N/A N/A P60405 39039256
    193980 8vty:1D (2.6) BS08 MG N/A N/A P60405 39039256
    193981 8vty:1D (2.6) BS09 MG N/A N/A P60405 39039256
    193982 8vty:1D (2.6) BS10 MG N/A N/A P60405 39039256
    193983 8vty:1D (2.6) BS11 MG N/A N/A P60405 39039256
    193984 8vty:1D (2.6) BS12 MG N/A N/A P60405 39039256
    193985 8vty:1D (2.6) BS13 MG N/A N/A P60405 39039256
    193986 8vty:1D (2.6) BS14 MG N/A N/A P60405 39039256
    193987 8vty:1E (2.6) BS02 MG N/A N/A Q5SHN8 39039256
    193988 8vty:1E (2.6) BS03 MG N/A N/A Q5SHN8 39039256
    193989 8vty:1E (2.6) BS04 MG N/A N/A Q5SHN8 39039256
    193990 8vty:1E (2.6) BS05 MG N/A N/A Q5SHN8 39039256
    193991 8vty:1F (2.6) BS02 MG N/A N/A Q5SHN9 39039256
    193992 8vty:1F (2.6) BS03 MG N/A N/A Q5SHN9 39039256
    193993 8vty:1F (2.6) BS04 MG N/A N/A Q5SHN9 39039256
    193994 8vty:1F (2.6) BS05 MG N/A N/A Q5SHN9 39039256
    193995 8vty:1F (2.6) BS06 MG N/A N/A Q5SHN9 39039256
    193996 8vty:1F (2.6) BS07 MG N/A N/A Q5SHN9 39039256
    193997 8vty:1F (2.6) BS08 MG N/A N/A Q5SHN9 39039256
    193998 8vty:1F (2.6) BS09 MG N/A N/A Q5SHN9 39039256
    193999 8vty:1F (2.6) BS10 MG N/A N/A Q5SHN9 39039256
    194000 8vty:1F (2.6) BS11 MG N/A N/A Q5SHN9 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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