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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    193401 8vqr:B (2.565) BS03 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    193402 8vrx:B (2.04) BS01 MG N/A N/A N/A N/A
    193403 8vs6:A (2.73) BS02 CA N/A N/A P06756 N/A
    193404 8vs6:A (2.73) BS03 CA N/A N/A P06756 N/A
    193405 8vs6:A (2.73) BS04 CA N/A N/A P06756 N/A
    193406 8vs6:A (2.73) BS05 CA N/A N/A P06756 N/A
    193407 8vs6:B (2.73) BS02 CA N/A N/A P26012 N/A
    193408 8vs6:B (2.73) BS03 MG N/A N/A P26012 N/A
    193409 8vsd:A (3.2) BS01 CA N/A N/A P06756 N/A
    193410 8vsd:A (3.2) BS02 CA N/A N/A P06756 N/A
    193411 8vsd:A (3.2) BS03 CA N/A N/A P06756 N/A
    193412 8vsd:A (3.2) BS04 CA N/A N/A P06756 N/A
    193413 8vsd:B (3.2) BS01 CA N/A N/A P26012 N/A
    193414 8vsd:B (3.2) BS02 MG N/A N/A P26012 N/A
    193415 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    193416 8vsi:B (3.1) BS02 MG 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    193417 8vt0:A (3.58) BS01 MG N/A N/A A0A024L722 39108302
    193418 8vt0:B (3.58) BS01 MG N/A N/A A0A024L722 39108302
    193419 8vt0:C (3.58) BS01 MG N/A N/A A0A024L722 39108302
    193420 8vt0:D (3.58) BS01 MG N/A N/A A0A024L722 39108302
    193421 8vtj:L (2.81) BS04 FE ? GO:0009772 ... Q3J1A5 N/A
    193422 8vtj:M (2.81) BS04 FE ? GO:0009772 ... Q3J1A6 N/A
    193423 8vtl:L (3.05) BS04 FE ? GO:0009772 ... P0C0Y8 N/A
    193424 8vtl:M (3.05) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    193425 8vtm:L (3.51) BS03 FE ? GO:0009772 ... Q3J1A5 N/A
    193426 8vtm:M (3.51) BS03 FE ? GO:0009772 ... Q3J1A6 N/A
    193427 8vtn:L (3.57) BS03 FE ? GO:0009772 ... P0C0Y8 N/A
    193428 8vtn:M (3.57) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    193429 8vto:L (3.09) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    193430 8vto:M (3.09) BS05 FE ? GO:0009772 ... P0C0Y9 N/A
    193431 8vtu:10 (2.4) BS04 MG N/A N/A P60493 39039256
    193432 8vtu:10 (2.4) BS05 MG N/A N/A P60493 39039256
    193433 8vtu:10 (2.4) BS06 MG N/A N/A P60493 39039256
    193434 8vtu:11 (2.4) BS03 MG N/A N/A P60494 39039256
    193435 8vtu:11 (2.4) BS04 MG N/A N/A P60494 39039256
    193436 8vtu:12 (2.4) BS02 MG N/A N/A Q5SHP6 39039256
    193437 8vtu:13 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    193438 8vtu:13 (2.4) BS04 MG N/A N/A Q5SHQ6 39039256
    193439 8vtu:13 (2.4) BS05 MG N/A N/A Q5SHQ6 39039256
    193440 8vtu:14 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    193441 8vtu:15 (2.4) BS02 MG N/A N/A P80339 39039256
    193442 8vtu:15 (2.4) BS03 ZN N/A N/A P80339 39039256
    193443 8vtu:16 (2.4) BS02 MG N/A N/A P35871 39039256
    193444 8vtu:16 (2.4) BS03 ZN N/A N/A P35871 39039256
    193445 8vtu:17 (2.4) BS02 MG N/A N/A P80340 39039256
    193446 8vtu:17 (2.4) BS03 MG N/A N/A P80340 39039256
    193447 8vtu:18 (2.4) BS02 MG N/A N/A Q5SKU1 39039256
    193448 8vtu:18 (2.4) BS03 MG N/A N/A Q5SKU1 39039256
    193449 8vtu:18 (2.4) BS04 MG N/A N/A Q5SKU1 39039256
    193450 8vtu:18 (2.4) BS05 MG N/A N/A Q5SKU1 39039256
    193451 8vtu:19 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    193452 8vtu:1D (2.4) BS03 MG N/A N/A P60405 39039256
    193453 8vtu:1D (2.4) BS04 MG N/A N/A P60405 39039256
    193454 8vtu:1D (2.4) BS05 MG N/A N/A P60405 39039256
    193455 8vtu:1D (2.4) BS06 MG N/A N/A P60405 39039256
    193456 8vtu:1D (2.4) BS07 MG N/A N/A P60405 39039256
    193457 8vtu:1D (2.4) BS08 MG N/A N/A P60405 39039256
    193458 8vtu:1D (2.4) BS09 MG N/A N/A P60405 39039256
    193459 8vtu:1D (2.4) BS10 MG N/A N/A P60405 39039256
    193460 8vtu:1D (2.4) BS11 MG N/A N/A P60405 39039256
    193461 8vtu:1D (2.4) BS12 MG N/A N/A P60405 39039256
    193462 8vtu:1D (2.4) BS13 MG N/A N/A P60405 39039256
    193463 8vtu:1D (2.4) BS14 MG N/A N/A P60405 39039256
    193464 8vtu:1E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    193465 8vtu:1E (2.4) BS03 MG N/A N/A Q5SHN8 39039256
    193466 8vtu:1E (2.4) BS04 MG N/A N/A Q5SHN8 39039256
    193467 8vtu:1E (2.4) BS05 MG N/A N/A Q5SHN8 39039256
    193468 8vtu:1F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    193469 8vtu:1F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    193470 8vtu:1F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    193471 8vtu:1F (2.4) BS05 MG N/A N/A Q5SHN9 39039256
    193472 8vtu:1F (2.4) BS06 MG N/A N/A Q5SHN9 39039256
    193473 8vtu:1F (2.4) BS07 MG N/A N/A Q5SHN9 39039256
    193474 8vtu:1F (2.4) BS08 MG N/A N/A Q5SHN9 39039256
    193475 8vtu:1F (2.4) BS09 MG N/A N/A Q5SHN9 39039256
    193476 8vtu:1F (2.4) BS10 MG N/A N/A Q5SHN9 39039256
    193477 8vtu:1G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    193478 8vtu:1I (2.4) BS02 MG N/A N/A Q5SLQ1 39039256
    193479 8vtu:1N (2.4) BS02 MG N/A N/A P60488 39039256
    193480 8vtu:1N (2.4) BS03 MG N/A N/A P60488 39039256
    193481 8vtu:1N (2.4) BS04 MG N/A N/A P60488 39039256
    193482 8vtu:1O (2.4) BS03 MG N/A N/A Q5SHP8 39039256
    193483 8vtu:1O (2.4) BS04 MG N/A N/A Q5SHP8 39039256
    193484 8vtu:1P (2.4) BS02 MG N/A N/A Q5SHQ7 39039256
    193485 8vtu:1P (2.4) BS03 MG N/A N/A Q5SHQ7 39039256
    193486 8vtu:1P (2.4) BS04 MG N/A N/A Q5SHQ7 39039256
    193487 8vtu:1P (2.4) BS05 MG N/A N/A Q5SHQ7 39039256
    193488 8vtu:1Q (2.4) BS05 MG N/A N/A P60489 39039256
    193489 8vtu:1Q (2.4) BS06 MG N/A N/A P60489 39039256
    193490 8vtu:1Q (2.4) BS07 MG N/A N/A P60489 39039256
    193491 8vtu:1Q (2.4) BS08 MG N/A N/A P60489 39039256
    193492 8vtu:1Q (2.4) BS09 MG N/A N/A P60489 39039256
    193493 8vtu:1R (2.4) BS02 MG N/A N/A Q9Z9H5 39039256
    193494 8vtu:1R (2.4) BS03 MG N/A N/A Q9Z9H5 39039256
    193495 8vtu:1S (2.4) BS03 MG N/A N/A Q5SHQ4 39039256
    193496 8vtu:1S (2.4) BS04 MG N/A N/A Q5SHQ4 39039256
    193497 8vtu:1U (2.4) BS02 MG N/A N/A P60491 39039256
    193498 8vtu:1U (2.4) BS03 MG N/A N/A P60491 39039256
    193499 8vtu:1U (2.4) BS04 MG N/A N/A P60491 39039256
    193500 8vtu:1U (2.4) BS05 MG N/A N/A P60491 39039256
    193501 8vtu:1U (2.4) BS06 MG N/A N/A P60491 39039256
    193502 8vtu:1U (2.4) BS07 MG N/A N/A P60491 39039256
    193503 8vtu:1U (2.4) BS08 MG N/A N/A P60491 39039256
    193504 8vtu:1V (2.4) BS02 MG N/A N/A P60492 39039256
    193505 8vtu:1V (2.4) BS03 MG N/A N/A P60492 39039256
    193506 8vtu:1V (2.4) BS04 MG N/A N/A P60492 39039256
    193507 8vtu:1V (2.4) BS05 MG N/A N/A P60492 39039256
    193508 8vtu:1V (2.4) BS06 MG N/A N/A P60492 39039256
    193509 8vtu:1V (2.4) BS07 MG N/A N/A P60492 39039256
    193510 8vtu:1W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    193511 8vtu:1W (2.4) BS03 MG N/A N/A Q5SHP3 39039256
    193512 8vtu:1W (2.4) BS04 MG N/A N/A Q5SHP3 39039256
    193513 8vtu:1W (2.4) BS05 MG N/A N/A Q5SHP3 39039256
    193514 8vtu:1X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    193515 8vtu:1X (2.4) BS03 MG N/A N/A Q5SHP0 39039256
    193516 8vtu:1X (2.4) BS04 MG N/A N/A Q5SHP0 39039256
    193517 8vtu:1X (2.4) BS05 MG N/A N/A Q5SHP0 39039256
    193518 8vtu:1X (2.4) BS06 MG N/A N/A Q5SHP0 39039256
    193519 8vtu:1Y (2.4) BS02 MG N/A N/A Q5SHP9 39039256
    193520 8vtu:1Y (2.4) BS03 MG N/A N/A Q5SHP9 39039256
    193521 8vtu:1Y (2.4) BS04 ZN N/A N/A Q5SHP9 39039256
    193522 8vtu:1e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    193523 8vtu:1e (2.4) BS03 MG N/A N/A Q5SHQ5 39039256
    193524 8vtu:1f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    193525 8vtu:1k (2.4) BS02 MG N/A N/A P80376 39039256
    193526 8vtu:1l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    193527 8vtu:1m (2.4) BS04 MG N/A N/A P80377 39039256
    193528 8vtu:1n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    193529 8vtu:1t (2.4) BS02 MG N/A N/A P80380 39039256
    193530 8vtu:21 (2.4) BS03 MG N/A N/A P60494 39039256
    193531 8vtu:23 (2.4) BS03 MG N/A N/A Q5SHQ6 39039256
    193532 8vtu:24 (2.4) BS02 ZN N/A N/A Q5SJE1 39039256
    193533 8vtu:25 (2.4) BS02 MG N/A N/A P80339 39039256
    193534 8vtu:25 (2.4) BS03 ZN N/A N/A P80339 39039256
    193535 8vtu:26 (2.4) BS02 MG N/A N/A P35871 39039256
    193536 8vtu:26 (2.4) BS03 ZN N/A N/A P35871 39039256
    193537 8vtu:27 (2.4) BS02 MG N/A N/A P80340 39039256
    193538 8vtu:27 (2.4) BS03 MG N/A N/A P80340 39039256
    193539 8vtu:29 (2.4) BS02 ZN N/A N/A Q5SHR2 39039256
    193540 8vtu:2D (2.4) BS03 MG N/A N/A P60405 39039256
    193541 8vtu:2D (2.4) BS04 MG N/A N/A P60405 39039256
    193542 8vtu:2D (2.4) BS05 MG N/A N/A P60405 39039256
    193543 8vtu:2D (2.4) BS06 MG N/A N/A P60405 39039256
    193544 8vtu:2E (2.4) BS02 MG N/A N/A Q5SHN8 39039256
    193545 8vtu:2F (2.4) BS02 MG N/A N/A Q5SHN9 39039256
    193546 8vtu:2F (2.4) BS03 MG N/A N/A Q5SHN9 39039256
    193547 8vtu:2F (2.4) BS04 MG N/A N/A Q5SHN9 39039256
    193548 8vtu:2G (2.4) BS04 MG N/A N/A Q5SHQ0 39039256
    193549 8vtu:2Q (2.4) BS05 MG N/A N/A P60489 39039256
    193550 8vtu:2Q (2.4) BS06 MG N/A N/A P60489 39039256
    193551 8vtu:2T (2.4) BS03 MG N/A N/A P60490 39039256
    193552 8vtu:2U (2.4) BS02 MG N/A N/A P60491 39039256
    193553 8vtu:2V (2.4) BS02 MG N/A N/A P60492 39039256
    193554 8vtu:2W (2.4) BS02 MG N/A N/A Q5SHP3 39039256
    193555 8vtu:2X (2.4) BS02 MG N/A N/A Q5SHP0 39039256
    193556 8vtu:2Y (2.4) BS02 ZN N/A N/A Q5SHP9 39039256
    193557 8vtu:2e (2.4) BS02 MG N/A N/A Q5SHQ5 39039256
    193558 8vtu:2f (2.4) BS02 MG N/A N/A Q5SLP8 39039256
    193559 8vtu:2k (2.4) BS02 MG N/A N/A P80376 39039256
    193560 8vtu:2l (2.4) BS02 MG N/A N/A Q5SHN3 39039256
    193561 8vtu:2l (2.4) BS03 MG N/A N/A Q5SHN3 39039256
    193562 8vtu:2l (2.4) BS04 MG N/A N/A Q5SHN3 39039256
    193563 8vtu:2n (2.4) BS02 ZN N/A N/A P0DOY6 39039256
    193564 8vtu:2q (2.4) BS02 MG N/A N/A P0DOY7 39039256
    193565 8vtu:2q (2.4) BS03 MG N/A N/A P0DOY7 39039256
    193566 8vtv:10 (2.55) BS04 MG N/A N/A P60493 39039256
    193567 8vtv:10 (2.55) BS05 MG N/A N/A P60493 39039256
    193568 8vtv:11 (2.55) BS03 MG N/A N/A P60494 39039256
    193569 8vtv:12 (2.55) BS02 MG N/A N/A Q5SHP6 39039256
    193570 8vtv:13 (2.55) BS03 MG N/A N/A Q5SHQ6 39039256
    193571 8vtv:13 (2.55) BS04 MG N/A N/A Q5SHQ6 39039256
    193572 8vtv:13 (2.55) BS05 MG N/A N/A Q5SHQ6 39039256
    193573 8vtv:13 (2.55) BS06 MG N/A N/A Q5SHQ6 39039256
    193574 8vtv:14 (2.55) BS02 ZN N/A N/A Q5SJE1 39039256
    193575 8vtv:15 (2.55) BS02 MG N/A N/A P80339 39039256
    193576 8vtv:15 (2.55) BS03 MG N/A N/A P80339 39039256
    193577 8vtv:15 (2.55) BS04 MG N/A N/A P80339 39039256
    193578 8vtv:15 (2.55) BS05 ZN N/A N/A P80339 39039256
    193579 8vtv:16 (2.55) BS02 MG N/A N/A P35871 39039256
    193580 8vtv:16 (2.55) BS03 MG N/A N/A P35871 39039256
    193581 8vtv:16 (2.55) BS04 ZN N/A N/A P35871 39039256
    193582 8vtv:17 (2.55) BS02 MG N/A N/A P80340 39039256
    193583 8vtv:17 (2.55) BS03 MG N/A N/A P80340 39039256
    193584 8vtv:18 (2.55) BS02 MG N/A N/A Q5SKU1 39039256
    193585 8vtv:18 (2.55) BS03 MG N/A N/A Q5SKU1 39039256
    193586 8vtv:19 (2.55) BS02 ZN N/A N/A Q5SHR2 39039256
    193587 8vtv:1D (2.55) BS03 MG N/A N/A P60405 39039256
    193588 8vtv:1D (2.55) BS04 MG N/A N/A P60405 39039256
    193589 8vtv:1D (2.55) BS05 MG N/A N/A P60405 39039256
    193590 8vtv:1D (2.55) BS06 MG N/A N/A P60405 39039256
    193591 8vtv:1D (2.55) BS07 MG N/A N/A P60405 39039256
    193592 8vtv:1D (2.55) BS08 MG N/A N/A P60405 39039256
    193593 8vtv:1D (2.55) BS09 MG N/A N/A P60405 39039256
    193594 8vtv:1D (2.55) BS10 MG N/A N/A P60405 39039256
    193595 8vtv:1D (2.55) BS11 MG N/A N/A P60405 39039256
    193596 8vtv:1D (2.55) BS12 MG N/A N/A P60405 39039256
    193597 8vtv:1D (2.55) BS13 MG N/A N/A P60405 39039256
    193598 8vtv:1E (2.55) BS02 MG N/A N/A Q5SHN8 39039256
    193599 8vtv:1E (2.55) BS03 MG N/A N/A Q5SHN8 39039256
    193600 8vtv:1E (2.55) BS04 MG N/A N/A Q5SHN8 39039256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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