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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    192801 8uxc:D (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192802 8uxe:A (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192803 8uxe:B (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192804 8uxe:C (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192805 8uxe:D (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192806 8uxf:A (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192807 8uxf:B (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192808 8uxf:C (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192809 8uxf:D (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192810 8uxg:A (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192811 8uxg:B (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192812 8uxg:C (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192813 8uxg:D (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192814 8uxh:A (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192815 8uxh:A (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    192816 8uxh:B (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192817 8uxh:B (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    192818 8uxh:C (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192819 8uxh:C (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    192820 8uxh:D (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192821 8uxh:D (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    192822 8uxi:A (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192823 8uxi:A (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    192824 8uxi:B (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192825 8uxi:B (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    192826 8uxi:C (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192827 8uxi:C (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    192828 8uxi:D (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192829 8uxi:D (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    192830 8uxl:A (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192831 8uxl:A (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    192832 8uxl:B (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192833 8uxl:B (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    192834 8uxl:C (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192835 8uxl:C (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    192836 8uxl:D (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192837 8uxl:D (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    192838 8uxl:I (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192839 8uxl:I (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192840 8uxl:I (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192841 8uxl:I (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192842 8uxl:J (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192843 8uxl:J (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192844 8uxl:J (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192845 8uxl:J (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192846 8uxl:K (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192847 8uxl:K (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192848 8uxl:K (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192849 8uxl:K (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192850 8uxl:L (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192851 8uxl:L (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192852 8uxl:L (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192853 8uxl:L (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192854 8uxm:A (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192855 8uxm:A (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    192856 8uxm:B (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192857 8uxm:B (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    192858 8uxm:C (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192859 8uxm:C (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    192860 8uxm:D (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    192861 8uxm:D (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    192862 8uxm:I (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192863 8uxm:I (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192864 8uxm:I (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192865 8uxm:I (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192866 8uxm:J (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192867 8uxm:J (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192868 8uxm:J (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192869 8uxm:J (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192870 8uxm:K (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192871 8uxm:K (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192872 8uxm:K (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192873 8uxm:K (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192874 8uxm:L (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    192875 8uxm:L (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    192876 8uxm:L (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    192877 8uxm:L (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    192878 8uyh:B (2.84) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    192879 8uyi:A (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    192880 8uyi:B (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    192881 8uz1:J (3.6) BS02 MG 3.6.4.- GO:0001725 ... P68139 38448439
    192882 8uze:A (3.03) BS01 ZN N/A N/A N/A N/A
    192883 8uze:B (3.03) BS01 ZN N/A N/A N/A N/A
    192884 8uzf:A (3.283) BS01 ZN N/A N/A N/A N/A
    192885 8uzf:B (3.283) BS01 ZN N/A N/A N/A N/A
    192886 8uzh:A (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    192887 8uzh:A (2.8) BS02 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    192888 8uzh:B (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    192889 8uzj:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    192890 8uzj:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    192891 8uzj:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    192892 8uzj:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    192893 8uzj:E (2.3) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    192894 8uzx:C (5.4) BS01 CA ? GO:0003009 ... P63317 38387550
    192895 8uzx:C (5.4) BS02 CA ? GO:0003009 ... P63317 38387550
    192896 8uzx:C (5.4) BS03 CA ? GO:0003009 ... P63317 38387550
    192897 8uzy:C (5.3) BS01 CA ? GO:0003009 ... P63317 38387550
    192898 8uzy:C (5.3) BS02 CA ? GO:0003009 ... P63317 38387550
    192899 8uzy:C (5.3) BS03 CA ? GO:0003009 ... P63317 38387550
    192900 8v01:C (5.5) BS01 CA ? GO:0003009 ... P63317 38387550
    192901 8v01:C (5.5) BS02 CA ? GO:0003009 ... P63317 38387550
    192902 8v01:C (5.5) BS03 CA ? GO:0003009 ... P63317 38387550
    192903 8v0i:C (5.8) BS01 CA ? GO:0003009 ... P63317 38387550
    192904 8v0i:C (5.8) BS02 CA ? GO:0003009 ... P63317 38387550
    192905 8v0i:C (5.8) BS03 CA ? GO:0003009 ... P63317 38387550
    192906 8v0k:C (5.2) BS01 CA ? GO:0003009 ... P63317 38387550
    192907 8v0k:C (5.2) BS02 CA ? GO:0003009 ... P63317 38387550
    192908 8v0k:C (5.2) BS03 CA ? GO:0003009 ... P63317 38387550
    192909 8v14:A (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    192910 8v14:B (1.9) BS01 CA ? GO:0046872 ... G5EEF9 38265937
    192911 8v15:A (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    192912 8v15:C (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    192913 8v1j:A (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    192914 8v1j:A (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    192915 8v1j:A (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    192916 8v1j:A (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    192917 8v1j:B (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    192918 8v1j:B (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    192919 8v1j:B (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    192920 8v1j:B (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    192921 8v1q:A (2.7) BS03 MG N/A N/A H9E937 39197451
    192922 8v1r:A (2.9) BS03 MG N/A N/A H9E937 39197451
    192923 8v1r:A (2.9) BS04 MG N/A N/A H9E937 39197451
    192924 8v1r:A (2.9) BS05 MG N/A N/A H9E937 39197451
    192925 8v1r:A (2.9) BS06 MG N/A N/A H9E937 39197451
    192926 8v1s:A (3.26) BS03 MG N/A N/A H9E937 39197451
    192927 8v1t:A (2.8) BS03 MG N/A N/A H9E937 39197451
    192928 8v1t:A (2.8) BS04 MG N/A N/A H9E937 39197451
    192929 8v1t:A (2.8) BS05 MG N/A N/A H9E937 39197451
    192930 8v1t:A (2.8) BS06 MG N/A N/A H9E937 39197451
    192931 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    192932 8v24:B (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    192933 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    192934 8v24:D (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    192935 8v2n:A (1.74) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    192936 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    192937 8v31:A (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    192938 8v31:C (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    192939 8v35:A (1.94) BS01 ZN N/A N/A Q46N53 39263660
    192940 8v35:B (1.94) BS01 ZN N/A N/A Q46N53 39263660
    192941 8v36:A (2.235) BS01 ZN N/A N/A Q46N53 39263660
    192942 8v36:B (2.235) BS02 ZN N/A N/A Q46N53 39263660
    192943 8v37:A (2.228) BS02 ZN N/A N/A Q46N53 39263660
    192944 8v37:B (2.228) BS01 ZN N/A N/A Q46N53 39263660
    192945 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 38420671
    192946 8v3m:A (1.8) BS01 ZN N/A N/A Q8NDL9 39020174
    192947 8v3n:A (2.3) BS01 ZN N/A N/A Q8NDL9 39020174
    192948 8v3o:A (2.3) BS02 ZN N/A N/A Q8NDL9 39020174
    192949 8v3p:A (2.36) BS02 ZN N/A N/A Q8NDL9 39020174
    192950 8v3q:A (3.1) BS02 ZN N/A N/A Q8NDL9 39020174
    192951 8v3r:A (3.4) BS02 ZN N/A N/A Q8NDL9 39020174
    192952 8v3s:A (3.6) BS02 ZN N/A N/A Q8NDL9 39020174
    192953 8v4j:A (1.31) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    192954 8v4k:E (3.1) BS01 ZN N/A N/A Q8NDL9 39020174
    192955 8v4l:E (2.9) BS02 ZN N/A N/A Q8NDL9 39020174
    192956 8v4m:E (3.0) BS02 ZN N/A N/A Q8NDL9 39020174
    192957 8v4s:A (2.49) BS02 ZN N/A N/A Q64663 39107314
    192958 8v4s:A (2.49) BS03 ZN N/A N/A Q64663 39107314
    192959 8v4s:B (2.49) BS02 ZN N/A N/A Q64663 39107314
    192960 8v4s:B (2.49) BS03 ZN N/A N/A Q64663 39107314
    192961 8v4s:C (2.49) BS02 ZN N/A N/A Q64663 39107314
    192962 8v4s:C (2.49) BS03 ZN N/A N/A Q64663 39107314
    192963 8v5m:A (9.22) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192964 8v5m:A (9.22) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192965 8v5m:D (9.22) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192966 8v5n:A (8.56) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192967 8v5n:A (8.56) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192968 8v5n:D (8.56) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192969 8v5o:A (8.99) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192970 8v5o:A (8.99) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192971 8v5o:D (8.99) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192972 8v5r:A (3.0) BS03 MG N/A GO:0000262 ... P54098 38932681
    192973 8v6g:A (11.16) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192974 8v6g:A (11.16) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192975 8v6g:A (11.16) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192976 8v6g:D (11.16) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192977 8v6h:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192978 8v6h:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192979 8v6h:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192980 8v6h:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192981 8v6i:A (14.06) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192982 8v6i:A (14.06) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192983 8v6i:A (14.06) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192984 8v6i:D (14.06) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192985 8v6j:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192986 8v6j:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192987 8v6j:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    192988 8v6j:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    192989 8v7a:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192990 8v7b:A (1.9) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192991 8v7c:A (1.79) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192992 8v7d:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192993 8v7e:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192994 8v7e:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192995 8v7f:A (2.2) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192996 8v7f:A (2.2) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192997 8v7g:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192998 8v7g:A (1.52) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    192999 8v7h:A (1.68) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    193000 8v7i:A (1.72) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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