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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    192601 8uvr:25 (2.6) BS02 MG N/A N/A P80339 38165935
    192602 8uvr:25 (2.6) BS03 ZN N/A N/A P80339 38165935
    192603 8uvr:26 (2.6) BS02 ZN N/A N/A P35871 38165935
    192604 8uvr:27 (2.6) BS02 MG N/A N/A P80340 38165935
    192605 8uvr:28 (2.6) BS02 MG N/A N/A Q5SKU1 38165935
    192606 8uvr:29 (2.6) BS02 MG N/A N/A Q5SHR2 38165935
    192607 8uvr:29 (2.6) BS03 ZN N/A N/A Q5SHR2 38165935
    192608 8uvr:2D (2.6) BS03 MG N/A N/A P60405 38165935
    192609 8uvr:2D (2.6) BS04 MG N/A N/A P60405 38165935
    192610 8uvr:2D (2.6) BS05 MG N/A N/A P60405 38165935
    192611 8uvr:2D (2.6) BS06 MG N/A N/A P60405 38165935
    192612 8uvr:2D (2.6) BS07 MG N/A N/A P60405 38165935
    192613 8uvr:2E (2.6) BS02 MG N/A N/A Q5SHN8 38165935
    192614 8uvr:2F (2.6) BS02 MG N/A N/A Q5SHN9 38165935
    192615 8uvr:2F (2.6) BS03 MG N/A N/A Q5SHN9 38165935
    192616 8uvr:2F (2.6) BS04 MG N/A N/A Q5SHN9 38165935
    192617 8uvr:2U (2.6) BS02 MG N/A N/A P60491 38165935
    192618 8uvr:2V (2.6) BS02 MG N/A N/A P60492 38165935
    192619 8uvr:2W (2.6) BS02 MG N/A N/A Q5SHP3 38165935
    192620 8uvr:2X (2.6) BS02 MG N/A N/A Q5SHP0 38165935
    192621 8uvr:2Y (2.6) BS02 ZN N/A N/A Q5SHP9 38165935
    192622 8uvr:2Z (2.6) BS03 MG N/A N/A Q5SHZ1 38165935
    192623 8uvr:2d (2.6) BS02 MG N/A N/A P80373 38165935
    192624 8uvr:2k (2.6) BS02 MG N/A N/A P80376 38165935
    192625 8uvr:2l (2.6) BS02 MG N/A N/A Q5SHN3 38165935
    192626 8uvr:2l (2.6) BS03 MG N/A N/A Q5SHN3 38165935
    192627 8uvr:2n (2.6) BS02 ZN N/A N/A P0DOY6 38165935
    192628 8uvr:2q (2.6) BS02 MG N/A N/A P0DOY7 38165935
    192629 8uvr:2q (2.6) BS03 MG N/A N/A P0DOY7 38165935
    192630 8uvr:2t (2.6) BS02 MG N/A N/A P80380 38165935
    192631 8uvs:10 (2.75) BS04 MG N/A N/A P60493 38165935
    192632 8uvs:10 (2.75) BS05 MG N/A N/A P60493 38165935
    192633 8uvs:11 (2.75) BS02 MG N/A N/A P60494 38165935
    192634 8uvs:13 (2.75) BS03 MG N/A N/A Q5SHQ6 38165935
    192635 8uvs:13 (2.75) BS04 MG N/A N/A Q5SHQ6 38165935
    192636 8uvs:13 (2.75) BS05 MG N/A N/A Q5SHQ6 38165935
    192637 8uvs:14 (2.75) BS02 ZN N/A N/A Q5SJE1 38165935
    192638 8uvs:15 (2.75) BS02 MG N/A N/A P80339 38165935
    192639 8uvs:15 (2.75) BS03 ZN N/A N/A P80339 38165935
    192640 8uvs:16 (2.75) BS02 MG N/A N/A P35871 38165935
    192641 8uvs:16 (2.75) BS03 MG N/A N/A P35871 38165935
    192642 8uvs:16 (2.75) BS04 ZN N/A N/A P35871 38165935
    192643 8uvs:17 (2.75) BS02 MG N/A N/A P80340 38165935
    192644 8uvs:17 (2.75) BS03 MG N/A N/A P80340 38165935
    192645 8uvs:18 (2.75) BS02 MG N/A N/A Q5SKU1 38165935
    192646 8uvs:18 (2.75) BS03 MG N/A N/A Q5SKU1 38165935
    192647 8uvs:18 (2.75) BS04 MG N/A N/A Q5SKU1 38165935
    192648 8uvs:18 (2.75) BS05 MG N/A N/A Q5SKU1 38165935
    192649 8uvs:19 (2.75) BS02 ZN N/A N/A Q5SHR2 38165935
    192650 8uvs:1D (2.75) BS03 MG N/A N/A P60405 38165935
    192651 8uvs:1D (2.75) BS04 MG N/A N/A P60405 38165935
    192652 8uvs:1D (2.75) BS05 MG N/A N/A P60405 38165935
    192653 8uvs:1D (2.75) BS06 MG N/A N/A P60405 38165935
    192654 8uvs:1D (2.75) BS07 MG N/A N/A P60405 38165935
    192655 8uvs:1D (2.75) BS08 MG N/A N/A P60405 38165935
    192656 8uvs:1D (2.75) BS09 MG N/A N/A P60405 38165935
    192657 8uvs:1D (2.75) BS10 MG N/A N/A P60405 38165935
    192658 8uvs:1D (2.75) BS11 MG N/A N/A P60405 38165935
    192659 8uvs:1D (2.75) BS12 MG N/A N/A P60405 38165935
    192660 8uvs:1D (2.75) BS13 MG N/A N/A P60405 38165935
    192661 8uvs:1E (2.75) BS02 MG N/A N/A Q5SHN8 38165935
    192662 8uvs:1E (2.75) BS03 MG N/A N/A Q5SHN8 38165935
    192663 8uvs:1E (2.75) BS04 MG N/A N/A Q5SHN8 38165935
    192664 8uvs:1E (2.75) BS05 MG N/A N/A Q5SHN8 38165935
    192665 8uvs:1E (2.75) BS06 MG N/A N/A Q5SHN8 38165935
    192666 8uvs:1F (2.75) BS02 MG N/A N/A Q5SHN9 38165935
    192667 8uvs:1F (2.75) BS03 MG N/A N/A Q5SHN9 38165935
    192668 8uvs:1F (2.75) BS04 MG N/A N/A Q5SHN9 38165935
    192669 8uvs:1F (2.75) BS05 MG N/A N/A Q5SHN9 38165935
    192670 8uvs:1F (2.75) BS06 MG N/A N/A Q5SHN9 38165935
    192671 8uvs:1F (2.75) BS07 MG N/A N/A Q5SHN9 38165935
    192672 8uvs:1F (2.75) BS08 MG N/A N/A Q5SHN9 38165935
    192673 8uvs:1F (2.75) BS09 MG N/A N/A Q5SHN9 38165935
    192674 8uvs:1F (2.75) BS10 MG N/A N/A Q5SHN9 38165935
    192675 8uvs:1G (2.75) BS04 MG N/A N/A Q5SHQ0 38165935
    192676 8uvs:1G (2.75) BS05 MG N/A N/A Q5SHQ0 38165935
    192677 8uvs:1N (2.75) BS02 MG N/A N/A P60488 38165935
    192678 8uvs:1N (2.75) BS03 MG N/A N/A P60488 38165935
    192679 8uvs:1O (2.75) BS03 MG N/A N/A Q5SHP8 38165935
    192680 8uvs:1O (2.75) BS04 MG N/A N/A Q5SHP8 38165935
    192681 8uvs:1P (2.75) BS02 MG N/A N/A Q5SHQ7 38165935
    192682 8uvs:1P (2.75) BS03 MG N/A N/A Q5SHQ7 38165935
    192683 8uvs:1P (2.75) BS04 MG N/A N/A Q5SHQ7 38165935
    192684 8uvs:1P (2.75) BS05 MG N/A N/A Q5SHQ7 38165935
    192685 8uvs:1P (2.75) BS06 MG N/A N/A Q5SHQ7 38165935
    192686 8uvs:1P (2.75) BS07 MG N/A N/A Q5SHQ7 38165935
    192687 8uvs:1P (2.75) BS08 MG N/A N/A Q5SHQ7 38165935
    192688 8uvs:1Q (2.75) BS04 MG N/A N/A P60489 38165935
    192689 8uvs:1Q (2.75) BS05 MG N/A N/A P60489 38165935
    192690 8uvs:1Q (2.75) BS06 MG N/A N/A P60489 38165935
    192691 8uvs:1Q (2.75) BS07 MG N/A N/A P60489 38165935
    192692 8uvs:1R (2.75) BS02 MG N/A N/A Q9Z9H5 38165935
    192693 8uvs:1R (2.75) BS03 MG N/A N/A Q9Z9H5 38165935
    192694 8uvs:1S (2.75) BS03 MG N/A N/A Q5SHQ4 38165935
    192695 8uvs:1S (2.75) BS04 MG N/A N/A Q5SHQ4 38165935
    192696 8uvs:1T (2.75) BS03 MG N/A N/A P60490 38165935
    192697 8uvs:1U (2.75) BS02 MG N/A N/A P60491 38165935
    192698 8uvs:1U (2.75) BS03 MG N/A N/A P60491 38165935
    192699 8uvs:1U (2.75) BS04 MG N/A N/A P60491 38165935
    192700 8uvs:1U (2.75) BS05 MG N/A N/A P60491 38165935
    192701 8uvs:1U (2.75) BS06 MG N/A N/A P60491 38165935
    192702 8uvs:1U (2.75) BS07 MG N/A N/A P60491 38165935
    192703 8uvs:1U (2.75) BS08 MG N/A N/A P60491 38165935
    192704 8uvs:1U (2.75) BS09 MG N/A N/A P60491 38165935
    192705 8uvs:1U (2.75) BS10 MG N/A N/A P60491 38165935
    192706 8uvs:1V (2.75) BS02 MG N/A N/A P60492 38165935
    192707 8uvs:1V (2.75) BS03 MG N/A N/A P60492 38165935
    192708 8uvs:1V (2.75) BS04 MG N/A N/A P60492 38165935
    192709 8uvs:1V (2.75) BS05 MG N/A N/A P60492 38165935
    192710 8uvs:1V (2.75) BS06 MG N/A N/A P60492 38165935
    192711 8uvs:1V (2.75) BS07 MG N/A N/A P60492 38165935
    192712 8uvs:1W (2.75) BS02 MG N/A N/A Q5SHP3 38165935
    192713 8uvs:1W (2.75) BS03 MG N/A N/A Q5SHP3 38165935
    192714 8uvs:1W (2.75) BS04 MG N/A N/A Q5SHP3 38165935
    192715 8uvs:1X (2.75) BS02 MG N/A N/A Q5SHP0 38165935
    192716 8uvs:1X (2.75) BS03 MG N/A N/A Q5SHP0 38165935
    192717 8uvs:1X (2.75) BS04 MG N/A N/A Q5SHP0 38165935
    192718 8uvs:1X (2.75) BS05 MG N/A N/A Q5SHP0 38165935
    192719 8uvs:1X (2.75) BS06 MG N/A N/A Q5SHP0 38165935
    192720 8uvs:1Y (2.75) BS02 MG N/A N/A Q5SHP9 38165935
    192721 8uvs:1Y (2.75) BS03 ZN N/A N/A Q5SHP9 38165935
    192722 8uvs:1b (2.75) BS02 MG N/A N/A P80371 38165935
    192723 8uvs:1e (2.75) BS03 MG N/A N/A Q5SHQ5 38165935
    192724 8uvs:1k (2.75) BS02 MG N/A N/A P80376 38165935
    192725 8uvs:1l (2.75) BS02 MG N/A N/A Q5SHN3 38165935
    192726 8uvs:1m (2.75) BS05 MG N/A N/A P80377 38165935
    192727 8uvs:1n (2.75) BS02 ZN N/A N/A P0DOY6 38165935
    192728 8uvs:1t (2.75) BS02 MG N/A N/A P80380 38165935
    192729 8uvs:21 (2.75) BS03 MG N/A N/A P60494 38165935
    192730 8uvs:23 (2.75) BS03 MG N/A N/A Q5SHQ6 38165935
    192731 8uvs:24 (2.75) BS02 ZN N/A N/A Q5SJE1 38165935
    192732 8uvs:25 (2.75) BS02 MG N/A N/A P80339 38165935
    192733 8uvs:25 (2.75) BS03 MG N/A N/A P80339 38165935
    192734 8uvs:25 (2.75) BS04 MG N/A N/A P80339 38165935
    192735 8uvs:25 (2.75) BS05 ZN N/A N/A P80339 38165935
    192736 8uvs:26 (2.75) BS02 MG N/A N/A P35871 38165935
    192737 8uvs:26 (2.75) BS03 ZN N/A N/A P35871 38165935
    192738 8uvs:27 (2.75) BS02 MG N/A N/A P80340 38165935
    192739 8uvs:29 (2.75) BS02 ZN N/A N/A Q5SHR2 38165935
    192740 8uvs:2D (2.75) BS03 MG N/A N/A P60405 38165935
    192741 8uvs:2D (2.75) BS04 MG N/A N/A P60405 38165935
    192742 8uvs:2D (2.75) BS05 MG N/A N/A P60405 38165935
    192743 8uvs:2D (2.75) BS06 MG N/A N/A P60405 38165935
    192744 8uvs:2D (2.75) BS07 MG N/A N/A P60405 38165935
    192745 8uvs:2E (2.75) BS02 MG N/A N/A Q5SHN8 38165935
    192746 8uvs:2F (2.75) BS02 MG N/A N/A Q5SHN9 38165935
    192747 8uvs:2F (2.75) BS03 MG N/A N/A Q5SHN9 38165935
    192748 8uvs:2F (2.75) BS04 MG N/A N/A Q5SHN9 38165935
    192749 8uvs:2Q (2.75) BS04 MG N/A N/A P60489 38165935
    192750 8uvs:2Q (2.75) BS05 MG N/A N/A P60489 38165935
    192751 8uvs:2Q (2.75) BS06 MG N/A N/A P60489 38165935
    192752 8uvs:2U (2.75) BS02 MG N/A N/A P60491 38165935
    192753 8uvs:2V (2.75) BS02 MG N/A N/A P60492 38165935
    192754 8uvs:2W (2.75) BS02 MG N/A N/A Q5SHP3 38165935
    192755 8uvs:2X (2.75) BS02 MG N/A N/A Q5SHP0 38165935
    192756 8uvs:2Y (2.75) BS02 ZN N/A N/A Q5SHP9 38165935
    192757 8uvs:2Z (2.75) BS02 MG N/A N/A Q5SHZ1 38165935
    192758 8uvs:2d (2.75) BS02 MG N/A N/A P80373 38165935
    192759 8uvs:2e (2.75) BS03 MG N/A N/A Q5SHQ5 38165935
    192760 8uvs:2f (2.75) BS02 MG N/A N/A Q5SLP8 38165935
    192761 8uvs:2k (2.75) BS02 MG N/A N/A P80376 38165935
    192762 8uvs:2l (2.75) BS03 MG N/A N/A Q5SHN3 38165935
    192763 8uvs:2l (2.75) BS04 MG N/A N/A Q5SHN3 38165935
    192764 8uvs:2n (2.75) BS02 ZN N/A N/A P0DOY6 38165935
    192765 8uvs:2q (2.75) BS02 MG N/A N/A P0DOY7 38165935
    192766 8uvy:A (2.11) BS02 ZN N/A N/A P31749 N/A
    192767 8uw0:A (0.93) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    192768 8uw6:A (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192769 8uw6:A (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192770 8uw6:B (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192771 8uw6:B (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192772 8uw6:B (1.8) BS03 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192773 8uw6:C (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192774 8uw6:C (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192775 8uw6:D (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192776 8uw6:D (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192777 8uw6:D (1.8) BS03 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    192778 8uw8:A (2.3) BS01 CA N/A N/A Q14703 38977690
    192779 8uw9:A (1.9) BS02 ZN N/A N/A P31749 N/A
    192780 8uwb:C (3.15) BS01 MN ? GO:0004722 ... P30153 38582449
    192781 8uwb:C (3.15) BS02 MN ? GO:0004722 ... P30153 38582449
    192782 8uwb:F (3.15) BS01 MN ? GO:0004722 ... P30153 38582449
    192783 8uwb:F (3.15) BS02 MN ? GO:0004722 ... P30153 38582449
    192784 8uws:A (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    192785 8uws:B (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    192786 8uws:C (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    192787 8uws:D (2.65) BS01 CA N/A GO:0004553 ... N/A N/A
    192788 8uwv:A (1.08) BS01 MG ? GO:0046872 ... Q8A0N7 N/A
    192789 8ux2:A (1.87) BS02 CA 2.4.2.- N/A Q7NY09 38159861
    192790 8ux2:B (1.87) BS02 CA 2.4.2.- N/A Q7NY09 38159861
    192791 8ux2:C (1.87) BS02 CA 2.4.2.- N/A Q7NY09 38159861
    192792 8ux5:A (3.06) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    192793 8ux5:B (3.06) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    192794 8ux7:A (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    192795 8ux7:A (2.2) BS02 CA ? GO:0005509 ... B3EWJ2 N/A
    192796 8ux7:B (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    192797 8ux7:B (2.2) BS02 CA ? GO:0005509 ... B3EWJ2 N/A
    192798 8uxc:A (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192799 8uxc:B (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    192800 8uxc:C (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218