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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    192001 8ugr:8A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    192002 8ugr:8F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    192003 8ugs:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    192004 8ugs:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    192005 8uh6:B (3.3) BS02 ZN N/A N/A Q96SW2 39152201
    192006 8uh7:B (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    192007 8uh7:C (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    192008 8uh7:D (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    192009 8uha:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192010 8uha:A (3.5) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192011 8uha:B (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    192012 8uha:C (3.5) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    192013 8uha:I (3.5) BS01 ZN ? GO:0000428 ... P60899 38401543
    192014 8uha:I (3.5) BS02 ZN ? GO:0000428 ... P60899 38401543
    192015 8uha:J (3.5) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    192016 8uha:L (3.5) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    192017 8uhd:A (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192018 8uhd:A (2.8) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192019 8uhd:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192020 8uhd:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    192021 8uhd:C (2.8) BS01 ZN ? GO:0003677 ... A0A481DF93 38401543
    192022 8uhd:I (2.8) BS01 ZN ? GO:0000428 ... P60899 38401543
    192023 8uhd:I (2.8) BS02 ZN ? GO:0000428 ... P60899 38401543
    192024 8uhd:J (2.8) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    192025 8uhd:L (2.8) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    192026 8uhg:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192027 8uhg:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192028 8uhg:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192029 8uhg:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    192030 8uhg:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    192031 8uhg:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    192032 8uhg:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    192033 8uhg:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    192034 8uhg:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    192035 8uhi:A (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192036 8uhi:B (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192037 8uhi:C (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192038 8uhi:D (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192039 8uhi:E (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192040 8uhi:F (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192041 8uhi:G (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192042 8uhi:H (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    192043 8uhw:B (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    192044 8uhw:C (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    192045 8uhw:D (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    192046 8uhw:E (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    192047 8uhw:F (3.28) BS01 FE N/A N/A A0A0H3W5U9 N/A
    192048 8uhz:A (2.55) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192049 8uhz:A (2.55) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192050 8ui0:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192051 8ui0:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192052 8ui0:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192053 8ui0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    192054 8ui0:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    192055 8ui0:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    192056 8ui0:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    192057 8ui0:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    192058 8ui0:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    192059 8ui1:A (2.91) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192060 8ui6:A (2.65) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192061 8ui6:A (2.65) BS04 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192062 8ui7:A (4.2) BS01 MG ? N/A Q96QE3 38871854
    192063 8ui8:A (3.1) BS01 MG ? N/A Q96QE3 38871854
    192064 8ui9:A (3.5) BS01 MG ? N/A Q96QE3 38871854
    192065 8uib:K (3.21) BS01 ZN N/A N/A Q5TA45 39032490
    192066 8uib:K (3.21) BS02 ZN N/A N/A Q5TA45 39032490
    192067 8uic:K (3.54) BS01 ZN N/A N/A Q9VAH9 39032490
    192068 8uic:K (3.54) BS02 ZN N/A N/A Q9VAH9 39032490
    192069 8uii:A (3.04) BS01 MG ? GO:0003677 ... Q96QE3 38871854
    192070 8uis:A (3.23) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192071 8uis:A (3.23) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192072 8uis:A (3.23) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    192073 8uis:B (3.23) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    192074 8uis:C (3.23) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    192075 8uis:I (3.23) BS01 ZN ? GO:0000428 ... P60899 38401543
    192076 8uis:I (3.23) BS02 ZN ? GO:0000428 ... P60899 38401543
    192077 8uis:J (3.23) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    192078 8uis:L (3.23) BS01 ZN ? GO:0003677 ... A0A8D0JYF1 38401543
    192079 8uje:A (2.5) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192080 8uje:A (2.5) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192081 8ujf:A (2.87) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192082 8ujf:A (2.87) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192083 8ujf:B (2.87) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192084 8ujf:B (2.87) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192085 8ujg:A (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192086 8ujg:A (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192087 8ujg:B (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192088 8ujg:B (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192089 8ujh:A (2.65) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192090 8ujh:A (2.65) BS04 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    192091 8ujm:A (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    192092 8ujm:B (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    192093 8ujt:A (2.31) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    192094 8ujt:A (2.31) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    192095 8ujv:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    192096 8ujv:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    192097 8ujx:A (2.17) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    192098 8ujx:A (2.17) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    192099 8uk2:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192100 8uk2:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192101 8uk2:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192102 8uk2:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192103 8uk2:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192104 8uk2:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192105 8uk2:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192106 8uk2:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192107 8uk2:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192108 8uk2:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192109 8uk2:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192110 8uk2:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192111 8uk2:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192112 8uk2:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192113 8uk2:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192114 8uk2:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192115 8uk2:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192116 8uk2:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192117 8uk2:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192118 8uk2:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192119 8uk2:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192120 8uk2:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192121 8uk2:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192122 8uk2:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192123 8uk2:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192124 8uk2:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192125 8uk2:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192126 8uk2:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192127 8uk2:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192128 8uk2:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192129 8uk2:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192130 8uk2:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192131 8uk2:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192132 8uk2:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192133 8uk2:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192134 8uk2:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192135 8uk2:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192136 8uk2:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192137 8uk2:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192138 8uk2:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192139 8uk2:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192140 8uk2:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192141 8uk2:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192142 8uk2:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192143 8uk2:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192144 8uk2:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192145 8uk2:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192146 8uk2:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192147 8uk2:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192148 8uk2:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192149 8uk2:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192150 8uk2:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192151 8uk2:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192152 8uk2:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192153 8uk3:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192154 8uk3:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192155 8uk3:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192156 8uk3:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192157 8uk3:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192158 8uk3:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192159 8uk3:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192160 8uk3:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192161 8uk3:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192162 8uk3:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192163 8uk3:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192164 8uk3:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192165 8uk3:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192166 8uk3:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192167 8uk3:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192168 8uk3:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192169 8uk3:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192170 8uk3:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192171 8uk3:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192172 8uk3:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192173 8uk3:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192174 8uk3:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192175 8uk3:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192176 8uk3:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192177 8uk3:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192178 8uk3:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192179 8uk3:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192180 8uk3:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192181 8uk3:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192182 8uk3:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192183 8uk3:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192184 8uk3:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192185 8uk3:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192186 8uk3:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192187 8uk3:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192188 8uk3:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192189 8uk3:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192190 8uk3:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192191 8uk3:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192192 8uk3:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192193 8uk3:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192194 8uk3:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192195 8uk3:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192196 8uk3:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192197 8uk3:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    192198 8uk3:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    192199 8uk3:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    192200 8uk3:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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