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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    191801 8uej:EK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191802 8uej:EL (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191803 8uej:EM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191804 8uej:EQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191805 8uej:EQ (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191806 8uej:ER (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191807 8uej:ES (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191808 8uej:EW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191809 8uej:EX (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191810 8uej:EY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191811 8uej:FC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191812 8uej:FD (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191813 8uej:FJ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191814 8uej:FK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191815 8uej:FO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191816 8uej:FP (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191817 8uej:FQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191818 8uej:FU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191819 8uej:FW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191820 8uej:GB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191821 8uej:GG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191822 8uej:GN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191823 8uej:GO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191824 8uej:GS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191825 8uej:GT (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191826 8uej:GU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191827 8uej:HC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191828 8uej:HD (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191829 8uej:HE (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191830 8uej:HI (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191831 8uej:HJ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191832 8uej:HK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191833 8uej:HO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191834 8uej:HP (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191835 8uej:HQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191836 8uej:HU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191837 8uej:HW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191838 8uej:HW (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191839 8uej:IA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191840 8uej:IA (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191841 8uej:IB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191842 8uej:IC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191843 8uej:IH (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191844 8uej:II (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191845 8uej:IM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191846 8uej:IN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191847 8uej:IT (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191848 8uej:IY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191849 8uej:IZ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191850 8uej:JA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191851 8uej:JA (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191852 8uej:JF (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191853 8uej:JG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191854 8uej:JK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191855 8uej:JK (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191856 8uej:JL (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191857 8uej:JL (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191858 8uej:JM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191859 8uej:JQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191860 8uej:JR (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191861 8uej:JS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191862 8uej:JW (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191863 8uej:KC (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191864 8uej:KD (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191865 8uej:KE (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191866 8uej:KJ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191867 8uej:KK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191868 8uej:KO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191869 8uej:KQ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191870 8uej:KV (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191871 8uej:LA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191872 8uej:LB (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191873 8uej:LB (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191874 8uej:LG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191875 8uej:LH (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191876 8uej:LI (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191877 8uej:LM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191878 8uej:LN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191879 8uej:LO (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191880 8uej:LO (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191881 8uej:LS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191882 8uej:LU (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191883 8uej:LY (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191884 8uej:LZ (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191885 8uej:MA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191886 8uej:ME (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191887 8uej:MG (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191888 8uej:MK (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191889 8uej:ML (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191890 8uej:ML (2.7) BS02 CA ? GO:0019028 ... D7RIC2 38701202
    191891 8uej:MM (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191892 8uej:MR (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191893 8uej:MS (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191894 8uej:NA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191895 8uej:NN (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    191896 8uel:A (2.49) BS02 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    191897 8uel:A (2.49) BS03 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    191898 8uel:B (2.49) BS02 MG 4.2.1.11 GO:0000015 ... O96656 38033172
    191899 8ueo:1R (3.8) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191900 8uep:1R (3.4) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191901 8ueq:1R (3.4) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191902 8uer:1R (3.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191903 8ues:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191904 8uet:1R (3.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191905 8ueu:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191906 8uev:1R (3.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191907 8uew:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191908 8uex:1O (3.9) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    191909 8uex:1R (3.9) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191910 8uey:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191911 8uez:1R (3.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191912 8uf4:A (2.43) BS01 CA N/A N/A Q14118 N/A
    191913 8uf5:A (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 28729722
    191914 8uf5:B (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 28729722
    191915 8ufb:R (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191916 8ufb:S (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191917 8ufb:T (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191918 8ufb:U (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191919 8ufb:V (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191920 8ufb:V (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    191921 8ufb:W (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191922 8ufb:W (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    191923 8ufb:X (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191924 8ufb:X (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    191925 8ufb:Y (3.89) BS01 CA ? GO:0005509 ... P98155 38176410
    191926 8ufb:Y (3.89) BS02 CA ? GO:0005509 ... P98155 38176410
    191927 8ufc:V (3.09) BS01 CA ? N/A P98155 38176410
    191928 8ufc:V (3.09) BS02 CA ? N/A P98155 38176410
    191929 8ufc:W (3.09) BS01 CA ? N/A P98155 38176410
    191930 8ufc:W (3.09) BS02 CA ? N/A P98155 38176410
    191931 8ufc:X (3.09) BS01 CA ? N/A P98155 38176410
    191932 8ufc:X (3.09) BS02 CA ? N/A P98155 38176410
    191933 8ufc:Y (3.09) BS01 CA ? N/A P98155 38176410
    191934 8ufc:Y (3.09) BS02 CA ? N/A P98155 38176410
    191935 8ufi:A (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    191936 8ufi:B (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    191937 8ufj:A (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    191938 8ufj:A (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    191939 8ufj:B (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    191940 8ufj:B (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    191941 8ufj:C (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    191942 8ufj:C (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    191943 8ufp:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    191944 8ufp:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    191945 8ufq:A (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    191946 8ufq:B (1.98) BS01 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    191947 8ufq:C (1.98) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    191948 8ufq:D (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    191949 8ufr:A (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191950 8ufr:B (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191951 8ufr:C (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191952 8ufr:D (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191953 8ufs:A (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191954 8ufs:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191955 8ufs:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191956 8ufs:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191957 8uft:A (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191958 8uft:B (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191959 8uft:C (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191960 8uft:D (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191961 8ufu:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191962 8ufu:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191963 8ufu:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191964 8ufu:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    191965 8ugb:A (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    191966 8ugb:B (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    191967 8ugh:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191968 8ugh:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    191969 8ugh:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    191970 8ugh:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191971 8ugi:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191972 8ugi:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    191973 8ugi:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    191974 8ugi:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191975 8ugj:1R (2.3) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191976 8ugj:4A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    191977 8ugj:4A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    191978 8ugj:4F (2.3) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191979 8ugj:8A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    191980 8ugj:8A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    191981 8ugj:8F (2.3) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191982 8ugl:4A (3.0) BS03 CU N/A GO:0004129 ... O79876 38811722
    191983 8ugl:4A (3.0) BS04 MG N/A GO:0004129 ... O79876 38811722
    191984 8ugl:4F (3.0) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191985 8ugn:1R (2.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191986 8ugn:4A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    191987 8ugn:4A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    191988 8ugn:4F (2.7) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191989 8ugn:5O (2.7) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    191990 8ugn:5R (2.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191991 8ugn:8A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    191992 8ugn:8A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    191993 8ugn:8F (2.7) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191994 8ugr:1R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    191995 8ugr:4A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    191996 8ugr:4A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    191997 8ugr:4F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    191998 8ugr:5O (6.5) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    191999 8ugr:5R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    192000 8ugr:8A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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