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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19001 1y7a:A (1.77) BS01 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    19002 1y7a:A (1.77) BS02 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    19003 1y7a:A (1.77) BS03 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    19004 1y7a:B (1.77) BS01 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    19005 1y7a:B (1.77) BS02 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    19006 1y7a:B (1.77) BS03 CO 3.1.3.1 GO:0000287 ... P00634 15938627
    19007 1y7b:A (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    19008 1y7b:B (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    19009 1y7b:C (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    19010 1y7b:D (1.6) BS01 CA 3.2.1.37 GO:0004553 ... Q97DM1 N/A
    19011 1y7o:A (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    19012 1y7o:B (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    19013 1y7o:C (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    19014 1y7o:E (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    19015 1y7o:F (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    19016 1y7o:G (2.51) BS01 CA 3.4.21.92 GO:0004176 ... P63788 15701650
    19017 1y7u:A (2.8) BS01 CA 3.1.2.20 GO:0003677 ... Q81EE4 N/A
    19018 1y7w:A (1.86) BS01 ZN N/A GO:0004089 ... N/A 15894606
    19019 1y7w:B (1.86) BS01 ZN N/A GO:0004089 ... N/A 15894606
    19020 1y8a:A (1.4) BS01 MG ? GO:0046872 ... O28835 N/A
    19021 1y8f:A (-1.00) BS01 ZN ? GO:0007268 ... Q62768 15667202
    19022 1y8f:A (-1.00) BS02 ZN ? GO:0007268 ... Q62768 15667202
    19023 1y8j:A (2.25) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 N/A
    19024 1y8q:B (2.25) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 15660128
    19025 1y8q:D (2.25) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 15660128
    19026 1y8r:B (2.75) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 15660128
    19027 1y8r:E (2.75) BS01 ZN 2.3.2.- GO:0000287 ... Q9UBT2 15660128
    19028 1y93:A (1.03) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 15809432
    19029 1y93:A (1.03) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 15809432
    19030 1y93:A (1.03) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    19031 1y93:A (1.03) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    19032 1y93:A (1.03) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    19033 1y9a:A (1.81) BS01 ZN 1.1.1.80 GO:0005737 ... P35630 16627948
    19034 1y9a:A (1.81) BS03 ZN 1.1.1.80 GO:0005737 ... P35630 16627948
    19035 1y9a:C (1.81) BS01 ZN 1.1.1.80 GO:0005737 ... P35630 16627948
    19036 1y9a:C (1.81) BS03 ZN 1.1.1.80 GO:0005737 ... P35630 16627948
    19037 1y9d:A (2.2) BS01 MG 1.2.3.3 GO:0000287 ... P37063 15794646
    19038 1y9d:B (2.2) BS01 MG 1.2.3.3 GO:0000287 ... P37063 15794646
    19039 1y9d:C (2.2) BS02 MG 1.2.3.3 GO:0000287 ... P37063 15794646
    19040 1y9d:D (2.2) BS02 MG 1.2.3.3 GO:0000287 ... P37063 15794646
    19041 1y9i:A (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    19042 1y9i:A (1.8) BS02 MG ? GO:0006629 ... Q8Y4N7 16838328
    19043 1y9i:B (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    19044 1y9i:B (1.8) BS02 MG ? GO:0006629 ... Q8Y4N7 16838328
    19045 1y9i:C (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    19046 1y9i:C (1.8) BS02 MG ? GO:0006629 ... Q8Y4N7 16838328
    19047 1y9i:D (1.8) BS01 CA ? GO:0006629 ... Q8Y4N7 16838328
    19048 1y9i:D (1.8) BS02 MG ? GO:0006629 ... Q8Y4N7 16838328
    19049 1y9q:A (1.9) BS01 ZN ? GO:0003677 ... Q9KQN0 N/A
    19050 1y9z:A (1.4) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    19051 1y9z:A (1.4) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    19052 1y9z:B (1.4) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    19053 1y9z:B (1.4) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    19054 1yag:G (1.9) BS01 CA ? GO:0051015 ... P06396 12732734
    19055 1yai:A (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P00446 8917495
    19056 1yai:A (1.9) BS02 ZN 1.15.1.1 GO:0004784 ... P00446 8917495
    19057 1yai:B (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P00446 8917495
    19058 1yai:B (1.9) BS02 ZN 1.15.1.1 GO:0004784 ... P00446 8917495
    19059 1yai:C (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P00446 8917495
    19060 1yai:C (1.9) BS02 ZN 1.15.1.1 GO:0004784 ... P00446 8917495
    19061 1yax:A (2.4) BS01 CA 2.7.13.3
    3.1.3.-    		 GO:0000160 ... P0DM80 16406409
    19062 1yax:B (2.4) BS01 CA 2.7.13.3
    3.1.3.-    		 GO:0000160 ... P0DM80 16406409
    19063 1yax:C (2.4) BS01 CA 2.7.13.3
    3.1.3.-    		 GO:0000160 ... P0DM80 16406409
    19064 1yax:D (2.4) BS01 CA 2.7.13.3
    3.1.3.-    		 GO:0000160 ... P0DM80 16406409
    19065 1yaz:A (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    19066 1yaz:A (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 10026301
    19067 1yb0:A (1.86) BS01 ZN 3.5.1.28 GO:0008745 ... A0A6H3AMF3 16103125
    19068 1yb0:B (1.86) BS01 ZN 3.5.1.28 GO:0008745 ... A0A6H3AMF3 16103125
    19069 1yb0:C (1.86) BS01 ZN 3.5.1.28 GO:0008745 ... A0A6H3AMF3 16103125
    19070 1ybh:A (2.5) BS01 MG 2.2.1.6 GO:0000287 ... P17597 16407096
    19071 1ybq:A (2.0) BS01 ZN 3.4.19.- GO:0005737 ... P39377 15882050
    19072 1ybq:A (2.0) BS02 ZN 3.4.19.- GO:0005737 ... P39377 15882050
    19073 1ybq:B (2.0) BS01 ZN 3.4.19.- GO:0005737 ... P39377 15882050
    19074 1ybq:B (2.0) BS02 ZN 3.4.19.- GO:0005737 ... P39377 15882050
    19075 1ybu:A (2.4) BS01 MN 3.1.1.-
    4.6.1.1    		 GO:0009190 ... O07732 15678099
    19076 1ybu:D (2.4) BS01 MN 3.1.1.-
    4.6.1.1    		 GO:0009190 ... O07732 15678099
    19077 1yc2:A (2.4) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19078 1yc2:A (2.4) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19079 1yc2:B (2.4) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19080 1yc2:B (2.4) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19081 1yc2:C (2.4) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19082 1yc2:C (2.4) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19083 1yc2:D (2.4) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19084 1yc2:D (2.4) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19085 1yc2:E (2.4) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15780941
    19086 1yc5:A (1.4) BS02 ZN 2.3.1.286 GO:0005737 ... Q9WYW0 15780941
    19087 1ycf:A (3.0) BS01 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19088 1ycg:A (2.8) BS01 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19089 1ycg:B (2.8) BS02 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19090 1ycg:C (2.8) BS01 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19091 1ych:A (2.8) BS01 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19092 1ych:B (2.8) BS02 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19093 1ych:C (2.8) BS01 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19094 1ych:D (2.8) BS02 ZN 1.-.-.- GO:0009055 ... Q9FDN7 15850383
    19095 1yci:A (2.7) BS01 FE2 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 15913349
    19096 1ycl:A (1.8) BS01 CO 4.4.1.21 GO:0005506 ... O34667 15751951
    19097 1ycm:A (-1.00) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 15809432
    19098 1ycm:A (-1.00) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 15809432
    19099 1ycm:A (-1.00) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    19100 1ycm:A (-1.00) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    19101 1ycm:A (-1.00) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    19102 1ycs:A (2.2) BS01 ZN ? GO:0000976 ... P04637 8875926
    19103 1yd0:A (1.5) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    19104 1yd1:A (1.8) BS01 MG ? GO:0006289 ... Q9WYA3 15692561
    19105 1yd2:A (1.6) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    19106 1yd3:A (1.6) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    19107 1yd4:A (1.9) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    19108 1yd4:A (1.9) BS02 MN ? GO:0006289 ... Q9WYA3 15692561
    19109 1yd5:A (1.8) BS01 MN ? GO:0006289 ... Q9WYA3 15692561
    19110 1yda:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263
    19111 1ydb:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263
    19112 1ydc:A (1.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263
    19113 1ydd:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263
    19114 1ydf:A (2.6) BS01 MG ? GO:0016787 ... A0A0H2UQJ9 N/A
    19115 1ydn:A (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    19116 1ydn:B (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    19117 1ydn:C (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    19118 1ydn:D (2.3) BS01 CA 4.1.3.4 GO:0003824 ... Q8YEF2 16330546
    19119 1ydy:A (1.7) BS01 CA 3.1.4.46 GO:0006629 ... P09394 N/A
    19120 1ydy:B (1.7) BS01 CA 3.1.4.46 GO:0006629 ... P09394 N/A
    19121 1ye3:A (1.59) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    19122 1ye3:A (1.59) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    19123 1yec:L (1.9) BS01 ZN N/A N/A N/A 9027317
    19124 1yef:L (2.0) BS01 ZN N/A N/A N/A 9223277
    19125 1yeg:L (2.0) BS01 ZN N/A N/A N/A 9223277
    19126 1yeh:L (2.55) BS01 ZN N/A N/A N/A 9223277
    19127 1yei:L (1.9) BS01 ZN ? GO:0046872 ... Q58EU8 9826512
    19128 1yej:L (1.85) BS01 ZN ? GO:0046872 ... Q58EU8 9826512
    19129 1yej:L (1.85) BS02 ZN ? GO:0046872 ... Q58EU8 9826512
    19130 1yek:L (2.1) BS01 ZN ? GO:0046872 ... Q58EU8 9826512
    19131 1yew:A (2.801) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    19132 1yew:C (2.801) BS01 ZN ? GO:0004497 ... O05111 15674245
    19133 1yew:E (2.801) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    19134 1yew:E (2.801) BS02 ZN 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    19135 1yew:G (2.801) BS01 ZN ? GO:0004497 ... O05111 15674245
    19136 1yew:I (2.801) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    19137 1yew:K (2.801) BS01 ZN ? GO:0004497 ... O05111 15674245
    19138 1yey:A (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    19139 1yey:B (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    19140 1yey:C (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    19141 1yey:D (2.34) BS01 MG 4.2.1.68 GO:0000287 ... Q8P3K2 N/A
    19142 1yf4:A (1.98) BS02 CA 3.4.21.4 GO:0004252 ... P00761 15854654
    19143 1yf6:L (2.25) BS06 FE2 ? GO:0009772 ... P0C0Y8 15865437
    19144 1yf6:M (2.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 15865437
    19145 1yfh:A (3.01) BS03 ZN 2.1.1.63 GO:0003824 ... P16455 15964013
    19146 1yfh:B (3.01) BS03 ZN 2.1.1.63 GO:0003824 ... P16455 15964013
    19147 1yfh:C (3.01) BS03 ZN 2.1.1.63 GO:0003824 ... P16455 15964013
    19148 1yfq:A (1.1) BS01 CA ? GO:0000776 ... P26449 15644329
    19149 1yfq:A (1.1) BS02 CA ? GO:0000776 ... P26449 15644329
    19150 1yfr:A (2.15) BS01 MG 6.1.1.7 GO:0000166 ... O67323 15657145
    19151 1yfr:B (2.15) BS01 MG 6.1.1.7 GO:0000166 ... O67323 15657145
    19152 1yfr:B (2.15) BS02 MG 6.1.1.7 GO:0000166 ... O67323 15657145
    19153 1yfu:A (1.9) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19154 1yfu:A (1.9) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19155 1yfw:A (2.0) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19156 1yfw:A (2.0) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19157 1yfx:A (2.0) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19158 1yfx:A (2.0) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19159 1yfy:A (3.2) BS01 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19160 1yfy:A (3.2) BS02 FE 1.13.11.6 GO:0000334 ... Q1LCS4 15909978
    19161 1yfz:A (2.2) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 15854655
    19162 1yfz:B (2.2) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 15854655
    19163 1yg9:A (1.3) BS01 ZN 3.4.23.- GO:0004190 ... P54958 15811379
    19164 1ygc:H (2.0) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15632123
    19165 1yge:A (1.4) BS01 FE 1.13.11.12 GO:0005506 ... P08170 8718858
    19166 1yh8:A (2.7) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19167 1yh8:A (2.7) BS02 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19168 1yh8:A (2.7) BS03 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19169 1yh8:B (2.7) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19170 1yh8:B (2.7) BS02 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19171 1yhc:A (2.1) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19172 1yhc:A (2.1) BS02 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19173 1yhc:A (2.1) BS03 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19174 1yhc:B (2.1) BS01 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19175 1yhc:B (2.1) BS02 ZN 3.5.1.108 GO:0006796 ... O67648 15705580
    19176 1yhl:A (1.95) BS01 MG ? GO:0004659 ... Q8WS26 16288456
    19177 1yhl:A (1.95) BS02 MG ? GO:0004659 ... Q8WS26 16288456
    19178 1yhm:A (2.5) BS01 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    19179 1yhm:A (2.5) BS02 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    19180 1yhm:B (2.5) BS01 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    19181 1yhm:B (2.5) BS02 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    19182 1yhm:C (2.5) BS01 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    19183 1yhm:C (2.5) BS02 MG 2.5.1.10 GO:0004659 ... Q8WS26 16288456
    19184 1yhn:A (3.0) BS01 MG 3.6.5.2 GO:0000045 ... P51149 15933719
    19185 1yhq:A (2.4) BS02 MG ? GO:0002181 ... P20276 15851032
    19186 1yhq:A (2.4) BS03 MG ? GO:0002181 ... P20276 15851032
    19187 1yhq:T (2.4) BS02 MG ? GO:0002181 ... P10972 15851032
    19188 1yhq:Y (2.4) BS02 MG ? GO:0000166 ... P12736 15851032
    19189 1yhu:B (3.15) BS01 ZN ? GO:0001666 ... P80592 15710902
    19190 1yhu:B (3.15) BS02 ZN ? GO:0001666 ... P80592 15710902
    19191 1yhu:F (3.15) BS01 ZN ? GO:0001666 ... P80592 15710902
    19192 1yhu:F (3.15) BS02 ZN ? GO:0001666 ... P80592 15710902
    19193 1yhu:J (3.15) BS01 ZN ? GO:0001666 ... P80592 15710902
    19194 1yhu:J (3.15) BS02 ZN ? GO:0001666 ... P80592 15710902
    19195 1yhu:N (3.15) BS01 ZN ? GO:0001666 ... P80592 15710902
    19196 1yhu:N (3.15) BS02 ZN ? GO:0001666 ... P80592 15710902
    19197 1yhu:R (3.15) BS01 ZN ? GO:0001666 ... P80592 15710902
    19198 1yhu:R (3.15) BS02 ZN ? GO:0001666 ... P80592 15710902
    19199 1yhu:V (3.15) BS01 ZN ? GO:0001666 ... P80592 15710902
    19200 1yhu:V (3.15) BS02 ZN ? GO:0001666 ... P80592 15710902
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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