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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    190401 8t8c:10 (2.6) BS05 MG ? GO:0003735 ... P60493 37433044
    190402 8t8c:10 (2.6) BS06 MG ? GO:0003735 ... P60493 37433044
    190403 8t8c:11 (2.6) BS02 MG ? GO:0003735 ... P60494 37433044
    190404 8t8c:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    190405 8t8c:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    190406 8t8c:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    190407 8t8c:15 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    190408 8t8c:15 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    190409 8t8c:15 (2.6) BS04 MG ? GO:0003735 ... P80339 37433044
    190410 8t8c:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 37433044
    190411 8t8c:16 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    190412 8t8c:17 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    190413 8t8c:17 (2.6) BS03 MG ? GO:0003735 ... P80340 37433044
    190414 8t8c:17 (2.6) BS04 MG ? GO:0003735 ... P80340 37433044
    190415 8t8c:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    190416 8t8c:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    190417 8t8c:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    190418 8t8c:1D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    190419 8t8c:1D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    190420 8t8c:1D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    190421 8t8c:1D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    190422 8t8c:1D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    190423 8t8c:1D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    190424 8t8c:1D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    190425 8t8c:1D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    190426 8t8c:1D (2.6) BS11 MG ? GO:0002181 ... P60405 37433044
    190427 8t8c:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    190428 8t8c:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    190429 8t8c:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    190430 8t8c:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    190431 8t8c:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    190432 8t8c:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    190433 8t8c:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    190434 8t8c:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    190435 8t8c:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    190436 8t8c:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    190437 8t8c:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    190438 8t8c:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    190439 8t8c:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    190440 8t8c:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 37433044
    190441 8t8c:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 37433044
    190442 8t8c:1G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    190443 8t8c:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 37433044
    190444 8t8c:1N (2.6) BS02 MG ? GO:0003729 ... P60488 37433044
    190445 8t8c:1N (2.6) BS03 MG ? GO:0003729 ... P60488 37433044
    190446 8t8c:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 37433044
    190447 8t8c:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    190448 8t8c:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 37433044
    190449 8t8c:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    190450 8t8c:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 37433044
    190451 8t8c:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 37433044
    190452 8t8c:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 37433044
    190453 8t8c:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 37433044
    190454 8t8c:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    190455 8t8c:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    190456 8t8c:1U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    190457 8t8c:1U (2.6) BS03 MG ? GO:0000027 ... P60491 37433044
    190458 8t8c:1U (2.6) BS04 MG ? GO:0000027 ... P60491 37433044
    190459 8t8c:1U (2.6) BS05 MG ? GO:0000027 ... P60491 37433044
    190460 8t8c:1U (2.6) BS06 MG ? GO:0000027 ... P60491 37433044
    190461 8t8c:1U (2.6) BS07 MG ? GO:0000027 ... P60491 37433044
    190462 8t8c:1V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    190463 8t8c:1V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    190464 8t8c:1V (2.6) BS04 MG ? GO:0003723 ... P60492 37433044
    190465 8t8c:1V (2.6) BS05 MG ? GO:0003723 ... P60492 37433044
    190466 8t8c:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    190467 8t8c:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    190468 8t8c:1b (2.6) BS02 MG ? GO:0003735 ... P80371 37433044
    190469 8t8c:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    190470 8t8c:1k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    190471 8t8c:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    190472 8t8c:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 37433044
    190473 8t8c:1m (2.6) BS02 MG ? GO:0000049 ... P80377 37433044
    190474 8t8c:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    190475 8t8c:1t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    190476 8t8c:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 37433044
    190477 8t8c:20 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    190478 8t8c:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    190479 8t8c:25 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    190480 8t8c:25 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    190481 8t8c:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 37433044
    190482 8t8c:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    190483 8t8c:27 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    190484 8t8c:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    190485 8t8c:2D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    190486 8t8c:2D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    190487 8t8c:2D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    190488 8t8c:2D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    190489 8t8c:2D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    190490 8t8c:2D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    190491 8t8c:2D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    190492 8t8c:2D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    190493 8t8c:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    190494 8t8c:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    190495 8t8c:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    190496 8t8c:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    190497 8t8c:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    190498 8t8c:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 37433044
    190499 8t8c:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    190500 8t8c:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    190501 8t8c:2U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    190502 8t8c:2V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    190503 8t8c:2V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    190504 8t8c:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    190505 8t8c:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    190506 8t8c:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    190507 8t8c:2k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    190508 8t8c:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    190509 8t8c:2t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    190510 8t94:A (2.11) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    190511 8t94:A (2.11) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    190512 8t98:A (1.3) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    190513 8t98:A (1.3) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    190514 8t99:A (1.5) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    190515 8t99:A (1.5) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62    		 GO:0016462 ... O95989 38216735
    190516 8taf:J (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190517 8taf:L (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190518 8taf:M (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190519 8taf:N (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190520 8taf:O (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190521 8taf:P (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190522 8taf:Q (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190523 8taf:R (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    190524 8tag:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    190525 8tag:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    190526 8tag:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    190527 8tai:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    190528 8tai:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    190529 8tai:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    190530 8tal:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    190531 8tal:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    190532 8tal:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    190533 8tav:A (1.39) BS04 CA N/A GO:0016020 ... Q2G025 N/A
    190534 8tav:A (1.39) BS05 CA N/A GO:0016020 ... Q2G025 N/A
    190535 8tb2:A (1.88) BS01 CA ? N/A Q8NUV0 38568806
    190536 8tbf:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190537 8tbf:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190538 8tbg:A (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    190539 8tbg:B (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    190540 8tbh:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190541 8tbh:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190542 8tbi:A (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    190543 8tbi:B (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    190544 8tbj:A (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190545 8tbj:B (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190546 8tbk:A (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190547 8tbk:B (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190548 8tbl:A (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190549 8tbl:B (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190550 8tbm:A (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190551 8tbm:B (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190552 8tbn:A (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190553 8tbn:B (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    190554 8tbs:A (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190555 8tbs:B (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190556 8tbs:C (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190557 8tbs:D (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190558 8tbs:E (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190559 8tbs:F (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190560 8tbs:G (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190561 8tbs:H (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190562 8tbt:A (2.34) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190563 8tbt:B (2.34) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190564 8tbt:C (2.34) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190565 8tbt:D (2.34) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190566 8tbu:A (2.35) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190567 8tbu:B (2.35) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190568 8tbu:C (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190569 8tbu:D (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190570 8tbu:E (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190571 8tbu:F (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190572 8tbu:G (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190573 8tbu:H (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    190574 8tbx:A (2.71) BS02 ZN 3.6.4.13 GO:0003676 ... Q92499 N/A
    190575 8tcc:A (3.1) BS01 MN N/A GO:0003933 ... A0A069BB45 N/A
    190576 8tcd:A (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190577 8tcd:B (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190578 8tcd:C (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190579 8tcd:D (1.9) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190580 8tcf:A (2.9) BS01 CA ? GO:0007155 ... P06756 37704610
    190581 8tcf:A (2.9) BS02 CA ? GO:0007155 ... P06756 37704610
    190582 8tcf:A (2.9) BS03 CA ? GO:0007155 ... P06756 37704610
    190583 8tcf:A (2.9) BS04 CA ? GO:0007155 ... P06756 37704610
    190584 8tcf:B (2.9) BS01 CA ? N/A P26012 37704610
    190585 8tcf:B (2.9) BS02 MG ? N/A P26012 37704610
    190586 8tcg:A (3.4) BS01 CA ? GO:0007155 ... P06756 37704610
    190587 8tcg:A (3.4) BS02 CA ? GO:0007155 ... P06756 37704610
    190588 8tcg:A (3.4) BS03 CA ? GO:0007155 ... P06756 37704610
    190589 8tcg:A (3.4) BS04 CA ? GO:0007155 ... P06756 37704610
    190590 8tcg:B (3.4) BS01 MN ? N/A P18564 37704610
    190591 8tcg:B (3.4) BS02 MN ? N/A P18564 37704610
    190592 8tcg:B (3.4) BS03 MN ? N/A P18564 37704610
    190593 8tcr:A (2.08) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190594 8tcr:B (2.08) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190595 8tcr:C (2.08) BS02 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190596 8tcr:D (2.08) BS01 CO N/A GO:0016853 ... A0A9P3ZKE6 38898276
    190597 8tcs:A (1.5) BS02 CO N/A N/A N/A 38898276
    190598 8tcs:B (1.5) BS02 CO N/A N/A N/A 38898276
    190599 8tcs:C (1.5) BS02 CO N/A N/A N/A 38898276
    190600 8tcs:D (1.5) BS02 CO N/A N/A N/A 38898276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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