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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    189401 8she:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    189402 8shf:q (3.0) BS02 MG ? GO:0002199 ... P50990 37852256
    189403 8shg:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    189404 8shk:C (1.71) BS02 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189405 8shl:Z (3.0) BS02 MG ? GO:0003723 ... P40227 37852256
    189406 8shn:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    189407 8shu:C (1.71) BS01 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189408 8shy:C (1.77) BS01 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189409 8shz:A (2.4) BS01 ZN 2.7.7.86 N/A Q8N884 38740774
    189410 8si0:A (2.7) BS02 ZN 2.7.7.86 N/A Q8N884 38740774
    189411 8sic:E (2.76) BS01 ZN ? N/A P03200 N/A
    189412 8sic:E (2.76) BS02 ZN ? N/A P03200 N/A
    189413 8sic:G (2.76) BS01 ZN ? N/A P03200 N/A
    189414 8sic:G (2.76) BS02 ZN ? N/A P03200 N/A
    189415 8sih:A (2.35) BS02 CA 2.1.1.319 GO:0016274 ... Q86X55 N/A
    189416 8sii:A (1.37) BS02 CA N/A N/A O95931 N/A
    189417 8sik:B (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189418 8sik:F (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189419 8sik:H (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189420 8sim:B (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189421 8sim:B (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    189422 8sim:D (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189423 8sim:D (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    189424 8sim:F (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189425 8sim:F (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    189426 8sim:H (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    189427 8sim:H (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    189428 8sj0:A (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189429 8sj0:A (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    189430 8sj0:C (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189431 8sj0:C (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    189432 8sj1:A (2.81) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189433 8sj1:A (2.81) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    189434 8sj1:C (2.81) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189435 8sj1:C (2.81) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    189436 8sj2:A (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    189437 8sj2:A (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189438 8sj2:C (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    189439 8sj2:C (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189440 8sj8:A (2.5) BS01 ZN 2.7.7.86 N/A Q8N884 38740774
    189441 8sjb:A (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    189442 8sjb:A (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    189443 8sjb:A (1.74) BS03 ZN N/A GO:0002523 ... P05109 N/A
    189444 8sjb:B (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    189445 8sjb:B (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    189446 8sjb:C (1.74) BS01 ZN N/A N/A P06702 N/A
    189447 8sjb:C (1.74) BS02 CA N/A N/A P06702 N/A
    189448 8sjb:C (1.74) BS03 CA N/A N/A P06702 N/A
    189449 8sjb:D (1.74) BS01 CA N/A N/A P06702 N/A
    189450 8sjb:D (1.74) BS02 CA N/A N/A P06702 N/A
    189451 8sjc:A (1.87) BS01 CA N/A GO:0002523 ... P05109 N/A
    189452 8sjc:A (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    189453 8sjc:A (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    189454 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 N/A
    189455 8sjc:B (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    189456 8sjc:B (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    189457 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 N/A
    189458 8sjc:C (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    189459 8sjc:C (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    189460 8sjc:D (1.87) BS01 CA N/A GO:0002523 ... P06702 N/A
    189461 8sjc:D (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    189462 8sjc:D (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    189463 8sjh:A (1.6) BS01 CA N/A GO:0005506 ... N/A 37352018
    189464 8sjh:A (1.6) BS02 CA N/A GO:0005506 ... N/A 37352018
    189465 8sji:A (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    189466 8sji:C (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    189467 8sk2:A (1.3) BS01 ZN 3.5.2.6 N/A C7C422 37549809
    189468 8sk2:A (1.3) BS02 ZN 3.5.2.6 N/A C7C422 37549809
    189469 8skf:A (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    189470 8skf:B (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    189471 8ski:A (2.163) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    189472 8sko:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    189473 8sko:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    189474 8sko:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    189475 8sko:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    189476 8skp:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    189477 8skp:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    189478 8sks:A (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    189479 8sks:B (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    189480 8sks:C (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    189481 8sks:D (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    189482 8skt:A (2.69) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189483 8skt:A (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    189484 8skt:A (2.69) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    189485 8skt:C (2.69) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    189486 8skt:C (2.69) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    189487 8skt:C (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    189488 8sky:A (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    189489 8sky:B (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    189490 8sl1:A (3.13) BS01 ZN 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    189491 8sl1:A (3.13) BS02 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    189492 8sl1:A (3.13) BS03 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    189493 8sld:A (2.85) BS01 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189494 8slf:B (2.9) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189495 8slf:B (2.9) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189496 8slg:A (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189497 8slg:A (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189498 8slg:B (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189499 8slg:B (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189500 8slh:A (3.05) BS02 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    189501 8sli:A (4.9) BS01 CA N/A N/A F1LMD7 38923985
    189502 8sli:A (4.9) BS02 CA N/A N/A F1LMD7 38923985
    189503 8sli:B (4.9) BS01 CA N/A N/A F1LMD7 38923985
    189504 8sli:B (4.9) BS02 CA N/A N/A F1LMD7 38923985
    189505 8sli:C (4.9) BS01 CA N/A N/A F1LMD7 38923985
    189506 8sli:C (4.9) BS02 CA N/A N/A F1LMD7 38923985
    189507 8sli:D (4.9) BS01 CA N/A N/A F1LMD7 38923985
    189508 8sli:D (4.9) BS02 CA N/A N/A F1LMD7 38923985
    189509 8slm:A (2.81) BS01 MN ? GO:0016787 ... Q1J1D6 38424107
    189510 8sln:A (2.2) BS02 MN ? GO:0016787 ... Q1J1D6 38424107
    189511 8slo:A (1.55) BS01 ZN 3.4.11.- GO:0006508 ... O96935 38976500
    189512 8slp:A (3.8) BS01 CA N/A N/A F1LMD7 38923985
    189513 8slp:A (3.8) BS02 CA N/A N/A F1LMD7 38923985
    189514 8slp:B (3.8) BS01 CA N/A N/A F1LMD7 38923985
    189515 8slp:B (3.8) BS02 CA N/A N/A F1LMD7 38923985
    189516 8slp:C (3.8) BS01 CA N/A N/A F1LMD7 38923985
    189517 8slp:C (3.8) BS02 CA N/A N/A F1LMD7 38923985
    189518 8slp:D (3.8) BS01 CA N/A N/A F1LMD7 38923985
    189519 8slp:D (3.8) BS02 CA N/A N/A F1LMD7 38923985
    189520 8slv:A (2.32) BS03 CA 3.2.1.20 GO:0005975 ... P13080 38428508
    189521 8slv:A (2.32) BS04 CA 3.2.1.20 GO:0005975 ... P13080 38428508
    189522 8slw:A (4.2) BS01 CA N/A N/A F1LMD7 38923985
    189523 8slw:A (4.2) BS02 CA N/A N/A F1LMD7 38923985
    189524 8slw:B (4.2) BS01 CA N/A N/A F1LMD7 38923985
    189525 8slw:B (4.2) BS02 CA N/A N/A F1LMD7 38923985
    189526 8slw:C (4.2) BS01 CA N/A N/A F1LMD7 38923985
    189527 8slw:C (4.2) BS02 CA N/A N/A F1LMD7 38923985
    189528 8slw:D (4.2) BS01 CA N/A N/A F1LMD7 38923985
    189529 8slw:D (4.2) BS02 CA N/A N/A F1LMD7 38923985
    189530 8sm6:A (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    189531 8sm6:A (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    189532 8sm6:B (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    189533 8sm6:B (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    189534 8sm6:C (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    189535 8sm6:C (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    189536 8sm6:D (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    189537 8sm6:D (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    189538 8sm7:A (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    189539 8sm7:A (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    189540 8sm7:B (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    189541 8sm7:B (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    189542 8sm7:D (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    189543 8sm7:D (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    189544 8sm7:G (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    189545 8sm7:G (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    189546 8sm8:A (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    189547 8sm8:A (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    189548 8sm8:A (2.0) BS03 MG ? GO:0005737 ... B6JH23 38198693
    189549 8sm8:A (2.0) BS04 MG ? GO:0005737 ... B6JH23 38198693
    189550 8sm8:D (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    189551 8sm8:D (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    189552 8sm8:G (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    189553 8sm8:G (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    189554 8sm8:J (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    189555 8sm8:J (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    189556 8sm9:B (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    189557 8sm9:B (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    189558 8sm9:D (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    189559 8sm9:D (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    189560 8sm9:F (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    189561 8sm9:F (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    189562 8sm9:H (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    189563 8sm9:H (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    189564 8sma:A (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    189565 8sma:A (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    189566 8sma:B (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    189567 8sma:B (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    189568 8sma:G (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    189569 8sma:G (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    189570 8sma:J (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    189571 8sma:J (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    189572 8smk:A (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189573 8smk:A (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189574 8smk:A (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189575 8smk:A (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189576 8smk:D (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189577 8smk:D (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189578 8smk:D (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189579 8smk:D (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189580 8sml:A (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189581 8sml:A (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189582 8sml:A (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189583 8sml:D (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189584 8sml:D (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189585 8sml:D (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    189586 8smr:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    189587 8smr:F (2.7) BS01 CA ? GO:0004129 ... Q9I3G4 37751552
    189588 8smw:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189589 8smw:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189590 8smx:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189591 8smx:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189592 8smy:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189593 8smy:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189594 8smz:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189595 8smz:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189596 8sn0:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189597 8sn0:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189598 8sn1:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189599 8sn1:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    189600 8sn2:K (3.6) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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