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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    189201 8sac:A (1.8) BS02 MG 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    189202 8sac:B (1.8) BS02 MG 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    189203 8sac:C (1.8) BS03 MG 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    189204 8sac:D (1.8) BS03 MG 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    189205 8sad:A (1.4) BS02 MG 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    189206 8sad:B (1.4) BS02 MG 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    189207 8saf:A (1.23) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    189208 8sag:A (1.52) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    189209 8sbb:A (3.59) BS01 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    189210 8sbb:A (3.59) BS02 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    189211 8sbm:A (1.47) BS01 ZN 2.7.13.3 N/A P9WGK3 37905955
    189212 8sbm:A (1.47) BS02 ZN 2.7.13.3 N/A P9WGK3 37905955
    189213 8sbm:B (1.47) BS01 ZN 2.7.13.3 N/A P9WGK3 37905955
    189214 8sbm:B (1.47) BS02 ZN 2.7.13.3 N/A P9WGK3 37905955
    189215 8scb:A (2.5) BS02 MG ? GO:0002181 ... G1TT27 38172604
    189216 8scb:A (2.5) BS03 MG ? GO:0002181 ... G1TT27 38172604
    189217 8scb:B (2.5) BS02 MG ? GO:0003723 ... G1TL06 38172604
    189218 8scb:EE (2.5) BS02 MG ? GO:0003723 ... G1TK17 38172604
    189219 8scb:I (2.5) BS03 MG ? GO:0000027 ... B7NZQ2 38172604
    189220 8scb:LL (2.5) BS02 MG ? GO:0003735 ... G1TRM4 38172604
    189221 8scb:OO (2.5) BS02 MG ? GO:0000028 ... G1T1F0 38172604
    189222 8scb:V (2.5) BS02 MG ? GO:0000122 ... G1T6D1 38172604
    189223 8scb:aa (2.5) BS02 ZN ? GO:0003729 ... G1TFE8 38172604
    189224 8scb:dd (2.5) BS02 ZN ? GO:0003735 ... G1U7M4 38172604
    189225 8scb:e (2.5) BS02 MG ? GO:0003735 ... G1TUN8 38172604
    189226 8scb:f (2.5) BS02 MG ? GO:0000049 ... G1SF08 38172604
    189227 8scb:ff (2.5) BS02 ZN ? GO:0003723 ... G1SK22 38172604
    189228 8scb:g (2.5) BS02 ZN ? GO:0003735 ... G1TXG5 38172604
    189229 8scb:g (2.5) BS03 MG ? GO:0003735 ... G1TXG5 38172604
    189230 8scb:j (2.5) BS03 ZN ? GO:0003723 ... U3KPD5 38172604
    189231 8scb:m (2.5) BS02 ZN ? GO:0003735 ... A0A2K5PSA0 38172604
    189232 8scb:o (2.5) BS03 ZN ? GO:0003735 ... G1T040 38172604
    189233 8scb:p (2.5) BS02 ZN ? GO:0003735 ... G1SY53 38172604
    189234 8scg:A (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189235 8scg:D (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189236 8sci:A (2.67) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189237 8sci:D (2.67) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189238 8scj:A (2.68) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189239 8scj:D (2.68) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189240 8sck:A (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189241 8sck:D (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189242 8scl:A (2.44) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189243 8scl:D (2.44) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189244 8scm:A (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189245 8scm:D (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189246 8scn:A (2.3) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189247 8scn:D (2.3) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189248 8sco:A (1.92) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189249 8sco:D (1.92) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189250 8scp:A (2.08) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189251 8scp:D (2.08) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189252 8scq:A (2.18) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189253 8scq:D (2.18) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189254 8scr:A (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189255 8scr:D (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189256 8scs:A (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189257 8scs:D (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189258 8sct:A (2.34) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189259 8sct:D (2.34) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189260 8scu:A (2.38) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189261 8scu:D (2.38) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    189262 8scz:A (3.4) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    189263 8sd0:A (3.8) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    189264 8sd1:A (1.298) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    189265 8sd6:A (1.397) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    189266 8sd7:A (1.704) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    189267 8sd8:A (1.789) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    189268 8sd9:A (1.904) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    189269 8sdk:A (2.1) BS01 CA 3.4.21.64 GO:0004252 ... P06873 37223996
    189270 8sen:A (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    189271 8sen:B (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    189272 8sen:C (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    189273 8sen:D (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    189274 8seo:A (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    189275 8seo:B (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    189276 8seo:C (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    189277 8seo:D (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    189278 8sep:A (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    189279 8sep:B (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    189280 8sep:C (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    189281 8sep:D (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    189282 8seq:A (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    189283 8seq:B (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    189284 8seq:C (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    189285 8seq:D (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    189286 8ser:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189287 8ser:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189288 8ser:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189289 8ser:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189290 8ses:A (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    189291 8ses:B (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    189292 8ses:C (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    189293 8ses:D (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    189294 8set:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189295 8set:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189296 8set:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189297 8set:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    189298 8seu:A (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    189299 8seu:B (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    189300 8seu:C (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    189301 8seu:D (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    189302 8sev:A (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    189303 8sev:B (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    189304 8sev:C (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    189305 8sev:D (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    189306 8sew:A (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    189307 8sew:B (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    189308 8sew:C (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    189309 8sew:D (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    189310 8sex:A (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    189311 8sex:B (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    189312 8sex:C (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    189313 8sex:D (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    189314 8sey:A (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    189315 8sey:B (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    189316 8sey:C (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    189317 8sey:D (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    189318 8sez:A (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    189319 8sez:B (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    189320 8sez:C (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    189321 8sez:D (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    189322 8sf0:A (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    189323 8sf0:B (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    189324 8sf0:C (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    189325 8sf0:D (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    189326 8sf1:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    189327 8sf2:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189328 8sf2:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189329 8sf7:EK (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189330 8sf7:GD (4.1) BS02 MG ? GO:0000226 ... P41352 38598282
    189331 8sf7:JA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189332 8sf7:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189333 8sf7:JE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189334 8sf7:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189335 8sf7:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189336 8sf7:JM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189337 8sf7:LC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189338 8sf7:LG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189339 8sf7:LH (4.1) BS01 MG ? GO:0000226 ... P41352 38598282
    189340 8sf7:LK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189341 8sf7:NC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189342 8sf7:NG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189343 8sf7:NK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189344 8sf7:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189345 8sf7:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189346 8sf7:QC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189347 8sf7:QG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189348 8sf7:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189349 8sf7:VM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189350 8sf7:WC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    189351 8sf9:D (1.8) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189352 8sf9:D (1.8) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189353 8sfa:D (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189354 8sfa:D (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189355 8sfa:S (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189356 8sfa:S (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189357 8sfa:b (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189358 8sfa:b (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189359 8sfa:t (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189360 8sfa:t (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189361 8sfb:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189362 8sfb:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189363 8sfc:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189364 8sfc:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189365 8sfd:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189366 8sfd:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189367 8sff:Q (3.2) BS02 MG ? GO:0002199 ... P50990 37852256
    189368 8sfk:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189369 8sfk:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189370 8sfm:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189371 8sfm:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    189372 8sfo:A (3.3) BS04 MG N/A GO:0003677 ... U2UMQ6 N/A
    189373 8sfo:A (3.3) BS05 MG N/A GO:0003677 ... U2UMQ6 N/A
    189374 8sg9:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    189375 8sgc:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    189376 8sgc:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    189377 8sgi:A (2.9) BS02 CA ? GO:0005432 ... P32418 N/A
    189378 8sgi:A (2.9) BS03 CA ? GO:0005432 ... P32418 N/A
    189379 8sgi:A (2.9) BS04 CA ? GO:0005432 ... P32418 N/A
    189380 8sgi:A (2.9) BS05 CA ? GO:0005432 ... P32418 N/A
    189381 8sgi:A (2.9) BS06 CA ? GO:0005432 ... P32418 N/A
    189382 8sgi:A (2.9) BS07 CA ? GO:0005432 ... P32418 N/A
    189383 8sgj:A (3.1) BS01 CA ? GO:0005432 ... P32418 37794011
    189384 8sgj:A (3.1) BS02 CA ? GO:0005432 ... P32418 37794011
    189385 8sgj:A (3.1) BS03 CA ? GO:0005432 ... P32418 37794011
    189386 8sgj:A (3.1) BS04 CA ? GO:0005432 ... P32418 37794011
    189387 8sgj:A (3.1) BS05 CA ? GO:0005432 ... P32418 37794011
    189388 8sgj:A (3.1) BS06 CA ? GO:0005432 ... P32418 37794011
    189389 8sgj:A (3.1) BS07 NA ? GO:0005432 ... P32418 37794011
    189390 8sgj:A (3.1) BS08 NA ? GO:0005432 ... P32418 37794011
    189391 8sgj:A (3.1) BS09 NA ? GO:0005432 ... P32418 37794011
    189392 8sgl:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    189393 8sgt:A (3.6) BS01 CA ? GO:0005432 ... P32418 37794011
    189394 8sgt:A (3.6) BS02 CA ? GO:0005432 ... P32418 37794011
    189395 8sgt:A (3.6) BS03 CA ? GO:0005432 ... P32418 37794011
    189396 8sgt:A (3.6) BS04 CA ? GO:0005432 ... P32418 37794011
    189397 8sgt:A (3.6) BS05 CA ? GO:0005432 ... P32418 37794011
    189398 8sgt:A (3.6) BS06 CA ? GO:0005432 ... P32418 37794011
    189399 8sh9:q (2.7) BS02 MG ? GO:0002199 ... P50990 37852256
    189400 8shd:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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