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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    188601 8rch:B (4.0) BS02 MG N/A N/A P42345 N/A
    188602 8rck:B (3.4) BS02 MG N/A N/A P42345 N/A
    188603 8rcl:4 (3.49) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    188604 8rcl:B (3.49) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    188605 8rcl:o2 (3.49) BS02 MG ? GO:0002181 ... P02413 38409277
    188606 8rcm:4 (3.59) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    188607 8rcn:B (3.1) BS02 MG N/A N/A P42345 N/A
    188608 8rcs:B (4.46) BS04 ZN ? GO:0000028 ... P0A7V0 38409277
    188609 8rcs:o2 (4.46) BS02 MG ? GO:0002181 ... P02413 38409277
    188610 8rct:4 (5.32) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    188611 8rct:B (5.32) BS03 ZN ? GO:0000028 ... P0A7V0 38409277
    188612 8rct:o2 (5.32) BS02 MG ? GO:0002181 ... P02413 38409277
    188613 8rdj:D (2.62) BS03 MG 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    188614 8rdj:E (2.62) BS02 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    188615 8rdj:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    188616 8rdj:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    188617 8rdk:A (2.0) BS01 ZN 2.7.11.1 GO:0004672 ... Q8TF76 39067440
    188618 8rdp:A (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188619 8rdp:B (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188620 8rdp:C (1.76) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188621 8rdq:A (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188622 8rdq:B (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188623 8rdq:C (2.03) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188624 8rdr:A (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188625 8rdr:B (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188626 8rdr:C (1.58) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188627 8rds:A (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188628 8rds:B (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188629 8rds:C (2.0) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188630 8rdt:A (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188631 8rdt:B (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188632 8rdt:C (1.95) BS01 ZN ? GO:0046872 ... A4TVL0 38552426
    188633 8rdu:C (2.3) BS03 ZN N/A N/A A0A8J0PCL5 38834066
    188634 8rdu:C (2.3) BS04 ZN N/A N/A A0A8J0PCL5 38834066
    188635 8rdu:L (2.3) BS03 MG N/A N/A A0A8J0PCL3 38834066
    188636 8rdu:R (2.3) BS06 MG N/A N/A A0A979HMQ2 38834066
    188637 8rdu:S (2.3) BS06 MG N/A N/A A0A979HMQ2 38834066
    188638 8rdx:B (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    188639 8rdx:D (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    188640 8rdx:F (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    188641 8rdx:H (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    188642 8rdx:J (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    188643 8rdx:L (3.67) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 38537632
    188644 8rdz:A (2.02) BS01 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188645 8rdz:A (2.02) BS03 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188646 8rdz:B (2.02) BS01 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188647 8rdz:B (2.02) BS03 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188648 8rdz:C (2.02) BS02 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188649 8rdz:C (2.02) BS04 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188650 8rdz:D (2.02) BS03 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188651 8rdz:D (2.02) BS04 MG 2.7.7.96
    3.6.1.13
    3.6.1.58
    GO:0000287 ... Q9UKK9 38635563
    188652 8re0:A (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188653 8re0:A (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188654 8re0:A (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188655 8re0:B (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188656 8re0:B (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188657 8re0:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188658 8re2:A (2.2) BS02 MG ? GO:0004601 ... Q9RZ08 38257271
    188659 8re2:A (2.2) BS03 MG ? GO:0004601 ... Q9RZ08 38257271
    188660 8re2:A (2.2) BS04 MG ? GO:0004601 ... Q9RZ08 38257271
    188661 8re4:D (2.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188662 8re4:D (2.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188663 8rea:D (3.4) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188664 8rea:D (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188665 8rea:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188666 8reb:D (3.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188667 8reb:D (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188668 8rec:D (3.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188669 8rec:D (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188670 8red:D (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188671 8ree:D (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188672 8ree:D (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38170755
    188673 8rfk:A (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188674 8rfk:A (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188675 8rfk:A (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188676 8rfk:B (1.56) BS01 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188677 8rfk:B (1.56) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188678 8rfk:B (1.56) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188679 8rfl:A (1.16) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188680 8rfl:A (1.16) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188681 8rfo:A (1.19) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188682 8rfo:A (1.19) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188683 8rfp:A (1.23) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188684 8rfp:A (1.23) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188685 8rfq:A (1.32) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188686 8rfq:A (1.32) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188687 8rfr:A (1.4) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188688 8rfr:A (1.4) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188689 8rfs:A (1.54) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188690 8rfs:A (1.54) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188691 8rft:A (1.7) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188692 8rft:A (1.7) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188693 8rfu:A (2.18) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    188694 8rfu:A (2.18) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    188695 8rfv:A (1.31) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    188696 8rfv:A (1.31) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    188697 8rfw:A (1.33) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    188698 8rfw:A (1.33) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    188699 8rfx:A (1.4) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    188700 8rfx:A (1.4) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    188701 8rfy:A (1.79) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    188702 8rfy:A (1.79) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    188703 8rg0:Q (3.4) BS03 ZN N/A N/A P62854 N/A
    188704 8rg1:A (1.19) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188705 8rg1:A (1.19) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188706 8rg1:A (1.19) BS04 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188707 8rg1:B (1.19) BS02 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188708 8rg1:B (1.19) BS03 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188709 8rg1:B (1.19) BS04 CA 1.1.5.2 GO:0008876 ... P13650 38687614
    188710 8rg8:A (1.21) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    188711 8rg8:A (1.21) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    188712 8rg9:A (1.25) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    188713 8rg9:A (1.25) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    188714 8rgb:A (1.39) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    188715 8rgb:A (1.39) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    188716 8rgc:A (1.55) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    188717 8rgc:A (1.55) BS07 CU N/A GO:0016491 ... H0SLX7 39002715
    188718 8rgd:A (1.71) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    188719 8rgd:A (1.71) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    188720 8rgp:7 (3.0) BS01 ZN ? GO:0001822 ... P52503 38575788
    188721 8rgq:7 (3.0) BS01 ZN ? GO:0001822 ... P52503 38575788
    188722 8rgr:7 (2.9) BS01 ZN ? GO:0001822 ... P52503 38575788
    188723 8rgt:7 (3.1) BS01 ZN ? GO:0001822 ... P52503 38575788
    188724 8rhe:A (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188725 8rhe:A (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188726 8rhe:A (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188727 8rhe:B (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188728 8rhe:B (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188729 8rhe:B (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188730 8rhf:A (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188731 8rhf:A (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188732 8rhf:A (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188733 8rhf:B (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188734 8rhf:B (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188735 8rhf:B (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188736 8rhi:A (1.98) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188737 8rhi:A (1.98) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188738 8rhi:A (1.98) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188739 8rhi:A (1.98) BS05 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188740 8rhi:B (1.98) BS01 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188741 8rhi:B (1.98) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188742 8rhi:B (1.98) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    188743 8rhj:G (3.05) BS01 MG ? GO:0000502 ... P21243 38628795
    188744 8rhj:K (3.05) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    188745 8rhj:V (3.05) BS03 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    188746 8rhj:Y (3.05) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    188747 8rhj:Z (3.05) BS02 MG ? GO:0000502 ... P23724 38628795
    188748 8rhk:G (2.8) BS01 MG ? GO:0000502 ... P21243 38628795
    188749 8rhk:I (2.8) BS02 MG ? GO:0000502 ... P25451 38628795
    188750 8rhk:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    188751 8rhk:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 38628795
    188752 8rhk:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    188753 8rhk:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    188754 8rhl:G (3.2) BS01 MG ? GO:0000502 ... P21243 38628795
    188755 8rhl:I (3.2) BS01 MG ? GO:0000502 ... P25451 38628795
    188756 8rhl:K (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    188757 8rhl:N (3.2) BS01 MG 3.4.25.1 GO:0000502 ... P38624 38628795
    188758 8rhl:V (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    188759 8rhl:Y (3.2) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    188760 8rhl:Z (3.2) BS02 MG ? GO:0000502 ... P23724 38628795
    188761 8rhq:D (2.0) BS01 MG ? GO:0000139 ... P61769 38742159
    188762 8rhr:A (1.42) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 38574272
    188763 8rhz:C (3.37) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    188764 8rhz:C (3.37) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    188765 8rhz:C (3.37) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    188766 8rhz:D (3.37) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    188767 8rhz:D (3.37) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    188768 8rhz:D (3.37) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 38605244
    188769 8rih:A (2.74) BS01 CA N/A GO:0005634 ... Q04179 39000137
    188770 8rih:B (2.74) BS01 CA N/A GO:0005634 ... Q04179 39000137
    188771 8rij:A (1.96) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    188772 8rij:A (1.96) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 38348661
    188773 8rij:A (1.96) BS03 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    188774 8rij:A (1.96) BS04 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    188775 8rij:A (1.96) BS05 CA 3.4.24.65 GO:0004222 ... P39900 38348661
    188776 8riv:A (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    188777 8riv:C (2.78) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    188778 8riw:A (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    188779 8riw:C (2.57) BS02 CA 3.6.5.- GO:0000226 ... P81947 38487227
    188780 8rjb:g (2.69243) BS02 ZN ? GO:0003735 ... G1TXG5 38896445
    188781 8rjb:g (2.69243) BS03 MG ? GO:0003735 ... G1TXG5 38896445
    188782 8rjb:j (2.69243) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    188783 8rjb:m (2.69243) BS02 ZN N/A GO:0003735 ... N/A 38896445
    188784 8rjb:o (2.69243) BS02 ZN ? GO:0003735 ... G1T040 38896445
    188785 8rjb:p (2.69243) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    188786 8rjc:g (2.90061) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    188787 8rjc:g (2.90061) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    188788 8rjc:j (2.90061) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    188789 8rjc:m (2.90061) BS02 ZN N/A GO:0003735 ... N/A 38896445
    188790 8rjc:o (2.90061) BS02 ZN ? GO:0003735 ... G1T040 38896445
    188791 8rjc:p (2.90061) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    188792 8rjd:g (2.78574) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    188793 8rjd:g (2.78574) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    188794 8rjd:j (2.78574) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    188795 8rjd:m (2.78574) BS02 ZN N/A GO:0003735 ... N/A 38896445
    188796 8rjd:o (2.78574) BS02 ZN ? GO:0003735 ... G1T040 38896445
    188797 8rjd:p (2.78574) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    188798 8rk1:A (2.095) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    188799 8rkt:C (2.35) BS03 ZN N/A N/A A0A8J0PCL5 38834066
    188800 8rkt:C (2.35) BS04 ZN N/A N/A A0A8J0PCL5 38834066

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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