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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    188401 8qyp:A (2.759) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    188402 8qyq:A (2.61) BS03 MG ? GO:0003774 ... Q9BE39 38014327
    188403 8qyq:B (2.61) BS04 MG ? GO:0003774 ... Q9BE39 38014327
    188404 8qyr:B (1.8) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    188405 8qyu:A (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    188406 8qyu:B (1.96) BS02 MG ? GO:0003774 ... Q9BE39 38014327
    188407 8qz1:A (3.588) BS01 K ? N/A P57789 38755204
    188408 8qz1:A (3.588) BS02 K ? N/A P57789 38755204
    188409 8qz1:A (3.588) BS03 K ? N/A P57789 38755204
    188410 8qz1:B (3.588) BS01 K ? N/A P57789 38755204
    188411 8qz1:B (3.588) BS02 K ? N/A P57789 38755204
    188412 8qz1:B (3.588) BS03 K ? N/A P57789 38755204
    188413 8qz2:A (3.5) BS01 K ? N/A P57789 38755204
    188414 8qz2:A (3.5) BS02 K ? N/A P57789 38755204
    188415 8qz2:A (3.5) BS03 K ? N/A P57789 38755204
    188416 8qz2:A (3.5) BS04 K ? N/A P57789 38755204
    188417 8qz2:B (3.5) BS01 K ? N/A P57789 38755204
    188418 8qz2:B (3.5) BS02 K ? N/A P57789 38755204
    188419 8qz2:B (3.5) BS03 K ? N/A P57789 38755204
    188420 8qz2:B (3.5) BS04 K ? N/A P57789 38755204
    188421 8qz3:A (2.4) BS01 K ? N/A P57789 38755204
    188422 8qz3:A (2.4) BS02 K ? N/A P57789 38755204
    188423 8qz3:A (2.4) BS03 K ? N/A P57789 38755204
    188424 8qz3:A (2.4) BS04 K ? N/A P57789 38755204
    188425 8qz3:A (2.4) BS05 K ? N/A P57789 38755204
    188426 8qz3:B (2.4) BS01 K ? N/A P57789 38755204
    188427 8qz3:B (2.4) BS02 K ? N/A P57789 38755204
    188428 8qz3:B (2.4) BS03 K ? N/A P57789 38755204
    188429 8qz3:B (2.4) BS04 K ? N/A P57789 38755204
    188430 8qz8:A (3.13) BS02 ZN ? N/A A0A142I7Z3 38066000
    188431 8qz8:B (3.13) BS04 MG ? GO:0001172 ... A0A1Y9SHW4 38066000
    188432 8qz8:C (3.13) BS02 ZN ? N/A A0A7G3S745 38066000
    188433 8qzc:A (3.29) BS01 CA ? GO:0005229 ... Q8BHY3 37984335
    188434 8qzc:A (3.29) BS02 CA ? GO:0005229 ... Q8BHY3 37984335
    188435 8qzc:B (3.29) BS01 CA ? GO:0005229 ... Q8BHY3 37984335
    188436 8qzc:B (3.29) BS02 CA ? GO:0005229 ... Q8BHY3 37984335
    188437 8qzi:A (2.5) BS02 MN N/A GO:0005515 ... O33336 N/A
    188438 8qzi:B (2.5) BS02 MN N/A GO:0005515 ... O33336 N/A
    188439 8qzi:C (2.5) BS02 MN N/A GO:0005515 ... O33336 N/A
    188440 8qzi:D (2.5) BS02 MN N/A GO:0005515 ... O33336 N/A
    188441 8qzj:A (2.0) BS02 MN N/A GO:0005515 ... O33336 N/A
    188442 8qzj:D (2.0) BS02 MN N/A GO:0005515 ... O33336 N/A
    188443 8r06:A (1.7) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 28937220
    188444 8r0z:A (1.2) BS03 MG N/A N/A P31947 39172504
    188445 8r1a:B (26.8) BS02 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    188446 8r1a:D (26.8) BS02 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    188447 8r1a:F (26.8) BS02 MG 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 38267655
    188448 8r1f:B (3.67) BS01 ZN ? GO:0000794 ... P03126
    Q12306    		 N/A
    188449 8r1f:B (3.67) BS02 ZN ? GO:0000794 ... P03126
    Q12306    		 N/A
    188450 8r1f:C (3.67) BS01 ZN ? GO:0000122 ... P04637 N/A
    188451 8r1g:B (3.99) BS01 ZN ? GO:0000794 ... P03126
    Q12306    		 N/A
    188452 8r1g:B (3.99) BS02 ZN ? GO:0000794 ... P03126
    Q12306    		 N/A
    188453 8r1g:C (3.99) BS01 ZN ? GO:0000122 ... P04637 N/A
    188454 8r1g:E (3.99) BS01 ZN ? GO:0000794 ... P03126
    Q12306    		 N/A
    188455 8r1g:E (3.99) BS02 ZN ? GO:0000794 ... P03126
    Q12306    		 N/A
    188456 8r1g:F (3.99) BS01 ZN ? GO:0000122 ... P04637 N/A
    188457 8r1i:A (1.46) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 37974542
    188458 8r22:C (3.9) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    188459 8r23:C (3.2) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    188460 8r23:C (3.2) BS02 ZN N/A GO:0004521 ... Q5TA45 39032489
    188461 8r2d:C (3.9) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    188462 8r2d:C (3.9) BS02 ZN N/A GO:0004521 ... Q5TA45 39032489
    188463 8r2h:A (2.42) BS01 MG 2.2.1.7 N/A Q8IDW0 39103329
    188464 8r2h:B (2.42) BS01 MG 2.2.1.7 N/A Q8IDW0 39103329
    188465 8r2i:A (2.9) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 38322422
    188466 8r2i:D (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 38322422
    188467 8r37:A (1.48) BS02 MN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    188468 8r37:B (1.48) BS02 MN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    188469 8r3k:B (3.43) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    188470 8r3k:B (3.43) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    188471 8r3o:A (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    188472 8r3o:B (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    188473 8r3o:C (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    188474 8r3o:D (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    188475 8r3p:A (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    188476 8r3p:B (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    188477 8r3p:C (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    188478 8r3p:D (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    188479 8r3q:A (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    188480 8r3q:B (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    188481 8r3q:C (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    188482 8r3q:D (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    188483 8r3r:A (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    188484 8r3r:B (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    188485 8r3r:C (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    188486 8r3r:D (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    188487 8r3s:A (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188488 8r3s:B (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188489 8r3s:C (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188490 8r3s:D (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188491 8r3s:E (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188492 8r3s:F (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188493 8r3s:G (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188494 8r3s:H (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188495 8r3s:I (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188496 8r3s:J (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    188497 8r3v:4 (3.28) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    188498 8r3z:A (3.4) BS02 MG N/A N/A N/A 38951509
    188499 8r4z:A (1.54) BS01 MG N/A GO:0008168 ... D5FKJ3 38887142
    188500 8r4z:A (1.54) BS02 MG N/A GO:0008168 ... D5FKJ3 38887142
    188501 8r4z:B (1.54) BS01 MG N/A GO:0008168 ... D5FKJ3 38887142
    188502 8r4z:B (1.54) BS02 MG N/A GO:0008168 ... D5FKJ3 38887142
    188503 8r57:P (2.55) BS02 MG ? GO:0000028 ... W5D067 38139282
    188504 8r57:d (2.55) BS02 ZN ? GO:0002181 ... Q5I7K3 38139282
    188505 8r57:f (2.55) BS02 ZN ? GO:0003729 ... W5A9E1 38139282
    188506 8r5h:R (3.44) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    188507 8r5h:R (3.44) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    188508 8r5h:R (3.44) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38382526
    188509 8r5o:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    188510 8r5o:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    188511 8r5o:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    188512 8r5t:A (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    188513 8r5t:A (1.58) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    188514 8r5t:B (1.58) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    188515 8r5t:B (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    188516 8r5u:A (1.56) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    188517 8r5u:A (1.56) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    188518 8r5u:B (1.56) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    188519 8r5u:B (1.56) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 38373290
    188520 8r67:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38735475
    188521 8r67:B (2.2) BS02 CA ? GO:0000226 ... Q6B856 38735475
    188522 8r67:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38735475
    188523 8r6c:3 (2.2) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    188524 8r6c:4 (2.2) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    188525 8r6f:a (2.34) BS02 ZN ? GO:0003729 ... A0A3B6KQB8 38139282
    188526 8r6s:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    188527 8r6s:I (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    188528 8r6s:N (2.49) BS01 FE N/A GO:0004784 ... N/A 38428394
    188529 8r6u:A (2.98) BS05 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    188530 8r6y:A (3.4) BS06 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    188531 8r7i:A (1.8) BS05 CU N/A N/A A0A0S3AND7 39151418
    188532 8r7i:A (1.8) BS06 CU N/A N/A A0A0S3AND7 39151418
    188533 8r7i:A (1.8) BS07 CU N/A N/A A0A0S3AND7 39151418
    188534 8r7i:A (1.8) BS08 CU N/A N/A A0A0S3AND7 39151418
    188535 8r8m:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    188536 8r8m:4 (2.4) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    188537 8r8r:C (2.79) BS02 ZN ? GO:0003676 ... O95639 38538052
    188538 8r8r:C (2.79) BS03 ZN ? GO:0003676 ... O95639 38538052
    188539 8r8r:C (2.79) BS04 ZN ? GO:0003676 ... O95639 38538052
    188540 8r8s:A (1.11) BS02 CU N/A N/A Q89EJ6 39002715
    188541 8r8s:A (1.11) BS03 CU N/A N/A Q89EJ6 39002715
    188542 8r99:A (1.81) BS02 MG 2.7.11.22
    2.7.11.23    		 GO:0000307 ... P50613 38870939
    188543 8r9b:A (2.21) BS02 MG 2.7.11.22
    2.7.11.23    		 GO:0000307 ... P50613 38870939
    188544 8r9b:B (2.21) BS02 MG 2.7.11.22
    2.7.11.23    		 GO:0000307 ... P50613 38870939
    188545 8r9t:A (1.4) BS01 CA N/A N/A A0A2K3CYA1 39255848
    188546 8ras:D (2.62) BS03 MG 2.7.7.6 GO:0000287 ... A0A6C0M5W0 38428394
    188547 8ras:E (2.62) BS02 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    188548 8ras:I (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    188549 8ras:N (2.62) BS01 FE N/A GO:0004784 ... N/A 38428394
    188550 8rbo:A (3.02) BS01 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    188551 8rbo:A (3.02) BS02 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    188552 8rbo:A (3.02) BS03 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    188553 8rbo:B (3.02) BS01 ZN 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    188554 8rbo:N (3.02) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    188555 8rbo:P (3.02) BS01 ZN 2.7.7.6 GO:0000428 ... Q8TZI3 38709902
    188556 8rbx:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    188557 8rbx:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38570683
    188558 8rbx:B (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38570683
    188559 8rbx:C (4.1) BS01 ZN ? GO:0000428 ... I3LCH3 38570683
    188560 8rbx:I (4.1) BS01 ZN ? GO:0000428 ... P60899 38570683
    188561 8rbx:I (4.1) BS02 ZN ? GO:0000428 ... P60899 38570683
    188562 8rbx:J (4.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38570683
    188563 8rbx:L (4.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38570683
    188564 8rbx:f (4.1) BS02 MN ? GO:0004888 ... Q9UL03 38570683
    188565 8rbx:k (4.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    188566 8rbx:k (4.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    188567 8rbx:q (4.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    188568 8rbz:k (3.7) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    188569 8rbz:k (3.7) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    188570 8rbz:q (3.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    188571 8rbz:q (3.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    188572 8rc4:k (3.1) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    188573 8rc4:k (3.1) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 38570683
    188574 8rc4:q (3.1) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    188575 8rc4:q (3.1) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38570683
    188576 8rcd:A (3.2) BS03 CA N/A N/A Q06609 39178838
    188577 8rcd:A (3.2) BS04 CA N/A N/A Q06609 39178838
    188578 8rcd:B (3.2) BS03 CA N/A N/A Q06609 39178838
    188579 8rcd:B (3.2) BS04 CA N/A N/A Q06609 39178838
    188580 8rcd:C (3.2) BS03 CA N/A N/A Q06609 39178838
    188581 8rcd:C (3.2) BS04 CA N/A N/A Q06609 39178838
    188582 8rcd:D (3.2) BS03 CA N/A N/A Q06609 39178838
    188583 8rcd:D (3.2) BS04 CA N/A N/A Q06609 39178838
    188584 8rcd:E (3.2) BS03 CA N/A N/A Q06609 39178838
    188585 8rcd:E (3.2) BS04 CA N/A N/A Q06609 39178838
    188586 8rcd:F (3.2) BS03 CA N/A N/A Q06609 39178838
    188587 8rcd:F (3.2) BS04 CA N/A N/A Q06609 39178838
    188588 8rcd:G (3.2) BS03 CA N/A N/A Q06609 39178838
    188589 8rcd:G (3.2) BS04 CA N/A N/A Q06609 39178838
    188590 8rcd:H (3.2) BS03 CA N/A N/A Q06609 39178838
    188591 8rcf:A (3.4) BS03 CA N/A N/A Q06609 39178838
    188592 8rcf:B (3.4) BS04 CA N/A N/A Q06609 39178838
    188593 8rcf:C (3.4) BS04 CA N/A N/A Q06609 39178838
    188594 8rcf:D (3.4) BS04 CA N/A N/A Q06609 39178838
    188595 8rcf:E (3.4) BS03 CA N/A N/A Q06609 39178838
    188596 8rcf:F (3.4) BS04 CA N/A N/A Q06609 39178838
    188597 8rcf:G (3.4) BS03 CA N/A N/A Q06609 39178838
    188598 8rcf:G (3.4) BS04 CA N/A N/A Q06609 39178838
    188599 8rcf:H (3.4) BS03 CA N/A N/A Q06609 39178838
    188600 8rch:A (4.0) BS02 MG N/A N/A P42345 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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