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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    185601 8k9p:A (1.5) BS01 CU ? GO:0042597 ... P04377 38232298
    185602 8k9z:B (2.9) BS01 CA N/A GO:0000086 ... P0DP24 39043696
    185603 8k9z:B (2.9) BS02 CA N/A GO:0000086 ... P0DP24 39043696
    185604 8k9z:B (2.9) BS03 CA N/A GO:0000086 ... P0DP24 39043696
    185605 8k9z:B (2.9) BS04 CA N/A GO:0000086 ... P0DP24 39043696
    185606 8k9z:D (2.9) BS01 CA N/A GO:0000086 ... P0DP24 39043696
    185607 8k9z:D (2.9) BS02 CA N/A GO:0000086 ... P0DP24 39043696
    185608 8k9z:D (2.9) BS03 CA N/A GO:0000086 ... P0DP24 39043696
    185609 8k9z:D (2.9) BS04 CA N/A GO:0000086 ... P0DP24 39043696
    185610 8ka0:B (2.35) BS01 CA N/A GO:0000086 ... P0DP24 39043696
    185611 8ka0:B (2.35) BS02 CA N/A GO:0000086 ... P0DP24 39043696
    185612 8ka0:D (2.35) BS01 CA N/A GO:0000086 ... P0DP24 39043696
    185613 8ka0:D (2.35) BS02 CA N/A GO:0000086 ... P0DP24 39043696
    185614 8ka0:F (2.35) BS01 CA N/A GO:0000086 ... P0DP24 39043696
    185615 8ka0:F (2.35) BS02 CA N/A GO:0000086 ... P0DP24 39043696
    185616 8ka0:H (2.35) BS01 CA N/A GO:0000086 ... P0DP24 39043696
    185617 8ka0:H (2.35) BS02 CA N/A GO:0000086 ... P0DP24 39043696
    185618 8ka1:F (2.82) BS01 MG N/A GO:0000086 ... P0DP24 39043696
    185619 8ka1:F (2.82) BS02 MG N/A GO:0000086 ... P0DP24 39043696
    185620 8ka1:F (2.82) BS03 MG N/A GO:0000086 ... P0DP24 39043696
    185621 8ka8:A (2.96) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A1U7QTA1 38305152
    185622 8kb3:A (1.62) BS01 MN N/A N/A P43019 N/A
    185623 8kb3:B (1.62) BS01 MN N/A N/A P43019 N/A
    185624 8kb8:C (2.49) BS01 MG N/A N/A P51149 N/A
    185625 8kb8:D (2.49) BS01 MG N/A N/A P51149 N/A
    185626 8kc2:A (2.6) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A1U7QTA1 38305152
    185627 8kc9:A (3.75) BS01 FE N/A N/A Q32P28 39245686
    185628 8kce:A (1.05) BS01 ZN N/A N/A A0A1D1V463 N/A
    185629 8kce:A (1.05) BS02 MG N/A N/A A0A1D1V463 N/A
    185630 8kci:A (3.94) BS03 MG N/A GO:0005524 ... O15440 38844452
    185631 8kci:A (3.94) BS04 MG N/A GO:0005524 ... O15440 38844452
    185632 8kcw:A (2.77) BS01 ZN ? N/A Q9NXL6 38811802
    185633 8kcw:C (2.77) BS01 ZN ? N/A Q9NXL6 38811802
    185634 8kcx:A (2.96) BS01 ZN ? N/A Q9NXL6 38811802
    185635 8kcx:C (2.96) BS01 ZN ? N/A Q9NXL6 38811802
    185636 8kda:E (3.19) BS02 MG N/A N/A D3DIV8 N/A
    185637 8kdb:A (2.7) BS01 MG 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... O89238 38605025
    185638 8kdb:A (2.7) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... O89238 38605025
    185639 8kdb:A (2.7) BS03 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... O89238 38605025
    185640 8kdc:A (3.3) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... O89238 38605025
    185641 8kdc:A (3.3) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... O89238 38605025
    185642 8kde:A (2.6) BS06 FE2 N/A GO:0005506 ... P07753 38890314
    185643 8kde:D (2.6) BS09 FE2 N/A GO:0005506 ... P06007 38890314
    185644 8kdu:A (2.3) BS03 CA N/A N/A P00760 N/A
    185645 8ke1:A (2.50082) BS03 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    185646 8ke2:A (2.1964) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    185647 8ke3:A (1.89981) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    185648 8ke4:A (1.75051) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    185649 8ke5:A (1.90007) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    185650 8ke6:A (1.89571) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 37904728
    185651 8kfd:A (1.8) BS01 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    185652 8kfd:A (1.8) BS02 MG 1.16.3.1 GO:0004322 ... P02794 N/A
    185653 8kfr:A (2.1) BS04 CA N/A N/A B4FCI7 38886375
    185654 8kfr:B (2.1) BS03 CA N/A N/A B4FCI7 38886375
    185655 8kft:A (2.43) BS04 MN N/A N/A B4FCI7 38886375
    185656 8kft:B (2.43) BS03 MN N/A N/A B4FCI7 38886375
    185657 8kfu:A (2.3) BS04 MN N/A N/A B4FCI7 38886375
    185658 8kfu:A (2.3) BS05 MN N/A N/A B4FCI7 38886375
    185659 8kfu:B (2.3) BS03 MN N/A N/A B4FCI7 38886375
    185660 8kfu:B (2.3) BS04 MN N/A N/A B4FCI7 38886375
    185661 8kfv:A (2.19) BS04 MN N/A N/A B4FCI7 38886375
    185662 8kfv:A (2.19) BS05 MN N/A N/A B4FCI7 38886375
    185663 8kfv:B (2.19) BS03 MN N/A N/A B4FCI7 38886375
    185664 8kfv:B (2.19) BS04 MN N/A N/A B4FCI7 38886375
    185665 8kfw:A (2.3) BS04 MN N/A N/A B4FCI7 38886375
    185666 8kfw:A (2.3) BS05 MN N/A N/A B4FCI7 38886375
    185667 8kfw:B (2.3) BS03 MN N/A N/A B4FCI7 38886375
    185668 8kfw:B (2.3) BS04 MN N/A N/A B4FCI7 38886375
    185669 8kg6:2 (3.07) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    185670 8kg6:4 (3.07) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    185671 8kg6:5 (3.07) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    185672 8kg6:5 (3.07) BS05 MG 3.6.4.12 GO:0000727 ... P29496 37730685
    185673 8kg6:6 (3.07) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    185674 8kg6:7 (3.07) BS02 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    185675 8kg6:M (3.07) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37730685
    185676 8kg6:M (3.07) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37730685
    185677 8kg8:2 (4.23) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    185678 8kg8:4 (4.23) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    185679 8kg8:5 (4.23) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    185680 8kg8:6 (4.23) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    185681 8kg8:7 (4.23) BS02 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    185682 8kg8:M (4.23) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37730685
    185683 8kg8:M (4.23) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37730685
    185684 8kg9:2 (4.52) BS01 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    185685 8kg9:2 (4.52) BS03 MG 3.6.4.12 GO:0000727 ... P29469 37730685
    185686 8kg9:4 (4.52) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    185687 8kg9:5 (4.52) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    185688 8kg9:5 (4.52) BS04 MG 3.6.4.12 GO:0000727 ... P29496 37730685
    185689 8kg9:6 (4.52) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    185690 8kg9:7 (4.52) BS02 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    185691 8kg9:7 (4.52) BS03 MG 3.6.4.12 GO:0000727 ... P38132 37730685
    185692 8kg9:M (4.52) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37730685
    185693 8kg9:M (4.52) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37730685
    185694 8kgr:B (3.2) BS03 MG 5.6.2.2 GO:0000166 ... A0A2X0THW2 38816407
    185695 8khn:A (1.51) BS01 CO 3.4.11.18 GO:0006508 ... Q6UB28 38102161
    185696 8khn:A (1.51) BS02 CO 3.4.11.18 GO:0006508 ... Q6UB28 38102161
    185697 8kho:A (1.45) BS02 CO 3.4.11.18 GO:0006508 ... Q6UB28 38102161
    185698 8kho:A (1.45) BS03 CO 3.4.11.18 GO:0006508 ... Q6UB28 38102161
    185699 8khq:A (2.69) BS01 CO ? N/A A0A1I5R890 38058600
    185700 8khq:B (2.69) BS01 CO ? N/A A0A1I5R890 38058600
    185701 8khq:C (2.69) BS01 CO ? N/A A0A1I5R890 38058600
    185702 8khq:D (2.69) BS01 CO ? N/A A0A1I5R890 38058600
    185703 8kht:A (2.05) BS01 FE2 1.-.-.-
    1.14.11.17    		 GO:0016491 ... P9WG83 38895101
    185704 8kht:B (2.05) BS01 FE2 1.-.-.-
    1.14.11.17    		 GO:0016491 ... P9WG83 38895101
    185705 8khv:A (1.9) BS01 MN N/A N/A A0A286FIB6 N/A
    185706 8khv:A (1.9) BS02 CA N/A N/A A0A286FIB6 N/A
    185707 8khv:A (1.9) BS03 CA N/A N/A A0A286FIB6 N/A
    185708 8khw:A (2.4) BS01 MN N/A N/A A0A4V1YUP8 N/A
    185709 8kif:A (2.13) BS01 FE2 N/A GO:0016491 ... B2HKM3 38895101
    185710 8kif:B (2.13) BS01 FE2 N/A GO:0016491 ... B2HKM3 38895101
    185711 8kif:C (2.13) BS01 FE2 N/A GO:0016491 ... B2HKM3 38895101
    185712 8kif:D (2.13) BS01 FE2 N/A GO:0016491 ... B2HKM3 38895101
    185713 8kih:A (2.0) BS02 MG N/A N/A N/A N/A
    185714 8nse:A (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    185715 8nse:B (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    185716 8odo:A (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185717 8odo:B (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185718 8odo:C (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185719 8odo:D (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185720 8odo:E (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185721 8odo:F (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185722 8odo:G (2.2) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185723 8odo:H (2.2) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185724 8odp:A (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185725 8odp:A (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185726 8odp:B (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185727 8odp:C (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185728 8odp:C (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185729 8odp:D (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185730 8odp:E (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185731 8odp:E (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185732 8odp:F (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185733 8odp:G (2.3) BS01 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185734 8odp:G (2.3) BS02 MN 6.5.1.8 GO:0001701 ... Q9Y3I0 38493148
    185735 8odp:H (2.3) BS01 MN ? GO:0008033 ... A8K0B5 38493148
    185736 8odq:A (1.65) BS01 ZN ? GO:0005506 ... O53156 37238602
    185737 8odq:C (1.65) BS01 ZN ? GO:0005506 ... O53156 37238602
    185738 8odu:A (5.0) BS01 ZN 3.6.-.- GO:0005524 ... G0SFE0 37963916
    185739 8oed:A (1.37) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    185740 8oeg:A (1.89) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 37561958
    185741 8oeh:A (1.77) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    185742 8oei:A (1.65) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    185743 8oej:A (8.0) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    185744 8oej:D (8.0) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    185745 8oel:A (8.2) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    185746 8oel:D (8.2) BS02 ZN ? GO:0000724 ... G8ZHS0 37087464
    185747 8oem:A (1.7) BS01 FE2 ? GO:0006826 ... Q7V0T9 38489389
    185748 8oen:A () BS01 FE N/A N/A N/A N/A
    185749 8oeo:A (1.3) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    185750 8oeq:0 (3.3) BS03 MG N/A N/A A0A8H6BZJ3 N/A
    185751 8oeq:8 (3.3) BS03 MG N/A N/A A0A8H6F6A1 N/A
    185752 8oeq:9 (3.3) BS03 MG N/A N/A A0A8H6F3X2 N/A
    185753 8oeq:AB (3.3) BS02 MG N/A N/A A0A8H6BVY8 N/A
    185754 8oeq:AF (3.3) BS02 MG N/A N/A O94008 N/A
    185755 8oeq:AG (3.3) BS02 MG N/A N/A A0A8H6BW57 N/A
    185756 8oeq:AH (3.3) BS02 MG N/A N/A A0A8H6F171 N/A
    185757 8oeq:AH (3.3) BS03 ZN N/A N/A A0A8H6F171 N/A
    185758 8oeq:AH (3.3) BS04 MG N/A N/A A0A8H6F171 N/A
    185759 8oeq:AH (3.3) BS05 MG N/A N/A A0A8H6F171 N/A
    185760 8oeq:AK (3.3) BS03 ZN N/A N/A A0A1D8PF45 N/A
    185761 8oeq:AM (3.3) BS03 MG N/A N/A Q96W55 N/A
    185762 8oeq:AN (3.3) BS02 ZN N/A N/A A0A1D8PL68 N/A
    185763 8oeq:AP (3.3) BS03 ZN N/A N/A A0A8H6BR69 N/A
    185764 8oeq:AP (3.3) BS04 MG N/A N/A A0A8H6BR69 N/A
    185765 8oeq:AQ (3.3) BS02 ZN N/A N/A A0A1D8PP14 N/A
    185766 8oeq:AR (3.3) BS02 MG N/A N/A A0A8H6C3E7 N/A
    185767 8oeq:AW (3.3) BS03 MG N/A N/A A0A8H6F1X9 N/A
    185768 8oeq:AW (3.3) BS04 MG N/A N/A A0A8H6F1X9 N/A
    185769 8oeq:AW (3.3) BS05 MG N/A N/A A0A8H6F1X9 N/A
    185770 8oeq:BE (3.3) BS03 MG N/A N/A Q5AIB8 N/A
    185771 8oeq:BG (3.3) BS04 MG N/A N/A A0A8H6F5V7 N/A
    185772 8oeq:BI (3.3) BS03 MG N/A N/A Q5A6R1 N/A
    185773 8oeq:BI (3.3) BS04 MG N/A N/A Q5A6R1 N/A
    185774 8oeq:BK (3.3) BS03 MG N/A N/A A0A8H6BUG0 N/A
    185775 8oeq:BS (3.3) BS03 MG N/A N/A A0A8H6F6A1 N/A
    185776 8oeq:BZ (3.3) BS02 MG N/A N/A O94008 N/A
    185777 8oeq:BZ (3.3) BS03 MG N/A N/A O94008 N/A
    185778 8oeq:CB (3.3) BS02 ZN N/A N/A A0A8H6F171 N/A
    185779 8oeq:CE (3.3) BS03 ZN N/A N/A A0A1D8PF45 N/A
    185780 8oeq:CK (3.3) BS02 ZN N/A N/A A0A1D8PP14 N/A
    185781 8oeq:CW (3.3) BS02 MG N/A N/A A0A8H6F1X2 N/A
    185782 8oeq:DB (3.3) BS02 MG N/A N/A A0A8H6F0V4 N/A
    185783 8oeq:DC (3.3) BS02 MG N/A N/A A0A1D8PK22 N/A
    185784 8oeq:DQ (3.3) BS02 MG N/A N/A A0A1D8PTR4 N/A
    185785 8oeq:DQ (3.3) BS03 ZN N/A N/A A0A1D8PTR4 N/A
    185786 8oeq:F (3.3) BS02 MG N/A N/A A0A8H6BYS1 N/A
    185787 8oeq:H (3.3) BS02 MG N/A N/A A0A8H6BS29 N/A
    185788 8oeq:I (3.3) BS02 MG N/A N/A A0A8H6BZ37 N/A
    185789 8oeq:K (3.3) BS03 MG N/A N/A A0A8H6F0S0 N/A
    185790 8oeq:Q (3.3) BS03 MG N/A N/A A0A8H6F0V4 N/A
    185791 8oeq:V (3.3) BS02 MG N/A N/A A0A8H6C5L4 N/A
    185792 8oeq:Y (3.3) BS02 MG N/A N/A A0A8H6F0N4 N/A
    185793 8oeq:Y (3.3) BS03 MG N/A N/A A0A8H6F0N4 N/A
    185794 8oeq:Z (3.3) BS02 MG N/A N/A A0A8H6F0V0 N/A
    185795 8oeq:c (3.3) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    185796 8oeq:f (3.3) BS02 ZN N/A N/A A0A1D8PTR4 N/A
    185797 8oeq:j (3.3) BS03 MG N/A N/A A0A8H6F1X9 N/A
    185798 8oeq:j (3.3) BS04 MG N/A N/A A0A8H6F1X9 N/A
    185799 8oeq:k (3.3) BS02 MG N/A N/A Q59LS1 N/A
    185800 8oeq:k (3.3) BS03 MG N/A N/A Q59LS1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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