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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    184001 8iwr:A (3.52) BS01 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    184002 8iws:A (3.42) BS01 MG 7.2.2.10 GO:0000139 ... P98194 37258749
    184003 8iws:A (3.42) BS02 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    184004 8iwt:A (3.25) BS02 MG 7.2.2.10 GO:0000139 ... P98194 37258749
    184005 8iwu:A (3.31) BS01 MG 7.2.2.10 GO:0000139 ... P98194 37258749
    184006 8iww:A (3.71) BS01 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    184007 8iyj:JG (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184008 8iyj:JI (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184009 8iyj:JM (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184010 8iyj:JQ (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184011 8iyj:QE (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184012 8iyj:QG (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184013 8iyj:QI (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184014 8iyj:QK (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184015 8iyj:QO (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184016 8iyj:RK (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184017 8iyj:WK (3.5) BS02 MG 3.6.5.- GO:0003674 ... P05214 37295417
    184018 8iyv:A (2.1) BS01 CA N/A N/A P00760 39216203
    184019 8izh:A (2.3) BS01 CA N/A N/A P00760 39216203
    184020 8izi:A (2.1) BS01 CA N/A N/A P00760 39216203
    184021 8izk:A (2.0) BS01 CA N/A N/A P00760 39216203
    184022 8izl:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... Q9J4L0 38760379
    184023 8izl:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... Q9J4L0 38760379
    184024 8izm:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... Q9J4L0 N/A
    184025 8izm:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... Q9J4L0 N/A
    184026 8izt:A (1.74) BS01 ZN ? N/A A0A7H0DNA4 38159644
    184027 8j07:AK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184028 8j07:AO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184029 8j07:BS (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184030 8j07:CE (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184031 8j07:DC (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184032 8j07:DE (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184033 8j07:DG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184034 8j07:DI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184035 8j07:DK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184036 8j07:DO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184037 8j07:DQ (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184038 8j07:DS (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184039 8j07:DU (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184040 8j07:DW (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184041 8j07:DY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184042 8j07:EE (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184043 8j07:EG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184044 8j07:EI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184045 8j07:EK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184046 8j07:EM (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184047 8j07:EO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184048 8j07:ES (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184049 8j07:EU (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184050 8j07:EW (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184051 8j07:EY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184052 8j07:FM (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184053 8j07:FO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184054 8j07:FY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184055 8j07:GG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184056 8j07:GY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184057 8j07:HA (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184058 8j07:HG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184059 8j07:HO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184060 8j07:IK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184061 8j07:IS (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184062 8j07:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184063 8j07:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184064 8j07:JK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184065 8j07:JQ (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184066 8j07:JU (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184067 8j07:KM (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184068 8j07:LY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184069 8j07:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184070 8j07:OY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184071 8j07:QE (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184072 8j07:QG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184073 8j07:QI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184074 8j07:QK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184075 8j07:QM (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184076 8j07:QO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184077 8j07:QS (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184078 8j07:QU (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184079 8j07:QW (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184080 8j07:QY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184081 8j07:RG (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184082 8j07:RK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184083 8j07:RM (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184084 8j07:RO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184085 8j07:RY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184086 8j07:SC (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184087 8j07:SI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184088 8j07:SK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184089 8j07:SU (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184090 8j07:SW (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184091 8j07:SY (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184092 8j07:TC (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184093 8j07:TK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184094 8j07:UI (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184095 8j07:UK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184096 8j07:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184097 8j07:VO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184098 8j07:WO (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q71U36 37258679
    184099 8j0e:B (3.4) BS04 MG 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 N/A
    184100 8j0f:A (3.3) BS05 MG 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    184101 8j0f:B (3.3) BS05 MG 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    184102 8j0f:C (3.3) BS05 MG 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    184103 8j0f:D (3.3) BS05 MG 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 38740943
    184104 8j0g:B (3.7) BS02 MG 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54888 N/A
    184105 8j12:A (3.08) BS04 ZN 3.1.-.- GO:0003677 ... A0A2U3D0N8 N/A
    184106 8j12:B (3.08) BS03 ZN 3.1.-.- GO:0003677 ... A0A2U3D0N8 N/A
    184107 8j1j:A (2.91) BS04 ZN 3.1.-.- GO:0003677 ... A0A2U3D0N8 N/A
    184108 8j1j:B (2.91) BS03 ZN 3.1.-.- GO:0003677 ... A0A2U3D0N8 N/A
    184109 8j1k:A (2.451) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 N/A
    184110 8j25:A (2.6) BS03 ZN 2.3.2.- GO:0005515 ... P0AEX9
    P29590
    37655965
    184111 8j25:A (2.6) BS04 ZN 2.3.2.- GO:0005515 ... P0AEX9
    P29590
    37655965
    184112 8j2a:A (1.7) BS02 MG ? N/A A9WIU3 N/A
    184113 8j2o:A (2.6) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    184114 8j2p:A (2.09) BS03 ZN 2.3.2.- GO:0005515 ... P0AEX9
    P29590
    37655965
    184115 8j2p:A (2.09) BS04 ZN 2.3.2.- GO:0005515 ... P0AEX9
    P29590
    37655965
    184116 8j2p:E (2.09) BS03 ZN 2.3.2.- GO:0005515 ... P0AEX9
    P29590
    37655965
    184117 8j2p:E (2.09) BS04 ZN 2.3.2.- GO:0005515 ... P0AEX9
    P29590
    37655965
    184118 8j3c:A (1.703) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    184119 8j3o:B (2.65) BS02 MG 1.17.1.9 GO:0000166 ... B9WHT3 37455264
    184120 8j3o:C (2.65) BS02 MG 1.17.1.9 GO:0000166 ... B9WHT3 37455264
    184121 8j3o:D (2.65) BS02 MG 1.17.1.9 GO:0000166 ... B9WHT3 37455264
    184122 8j3r:A (2.95) BS04 ZN 3.1.-.- GO:0003677 ... A0A2U3D0N8 N/A
    184123 8j3x:A (2.4) BS01 MG ? GO:0030246 ... Q21KS2 N/A
    184124 8j3x:B (2.4) BS01 MG ? GO:0030246 ... Q21KS2 N/A
    184125 8j3y:A (1.28) BS09 MG ? GO:0030246 ... Q21KS2 N/A
    184126 8j3y:B (1.28) BS09 MG ? GO:0030246 ... Q21KS2 N/A
    184127 8j3z:A (3.17) BS03 MG 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 N/A
    184128 8j48:A (1.94) BS01 ZN ? GO:0006355 ... Q8LC79 38326322
    184129 8j48:D (1.94) BS01 ZN ? GO:0006355 ... Q8LC79 38326322
    184130 8j49:A (1.66) BS01 ZN ? GO:0003677 ... Q9S758 38326322
    184131 8j49:A (1.66) BS02 ZN ? GO:0003677 ... Q9S758 38326322
    184132 8j4b:B (2.0) BS01 ZN ? GO:0003677 ... P0DI11 38326322
    184133 8j4b:B (2.0) BS02 ZN ? GO:0003677 ... P0DI11 38326322
    184134 8j4b:D (2.0) BS01 ZN ? GO:0003677 ... P0DI11 38326322
    184135 8j4b:D (2.0) BS02 ZN ? GO:0003677 ... P0DI11 38326322
    184136 8j54:C (2.72) BS03 ZN ? GO:0003700 ... P28700 38309263
    184137 8j54:C (2.72) BS04 ZN ? GO:0003700 ... P28700 38309263
    184138 8j54:D (2.72) BS03 ZN ? GO:0003700 ... P28700 38309263
    184139 8j54:E (2.72) BS03 ZN ? GO:0003700 ... P28700 38309263
    184140 8j54:E (2.72) BS04 ZN ? GO:0003700 ... P28700 38309263
    184141 8j54:F (2.72) BS03 ZN ? GO:0003700 ... P28700 38309263
    184142 8j54:F (2.72) BS04 ZN ? GO:0003700 ... P28700 38309263
    184143 8j56:C (3.5) BS01 ZN ? GO:0003677 ... Q0K4N7 37343320
    184144 8j56:F (3.5) BS01 ZN ? GO:0003677 ... Q0K4N7 37343320
    184145 8j5k:A (2.93) BS03 FE2 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    184146 8j5k:D (2.93) BS01 FE2 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    184147 8j5k:a (2.93) BS03 FE2 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    184148 8j5k:d (2.93) BS01 FE2 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    184149 8j5o:L (2.9) BS04 FE ? GO:0009772 ... A7NQE8 37737710
    184150 8j5o:M (2.9) BS03 FE ? GO:0009772 ... A7NQE8 37737710
    184151 8j5p:L (3.1) BS07 FE ? GO:0009772 ... A7NQE8 37737710
    184152 8j5p:M (3.1) BS05 FE ? GO:0009772 ... A7NQE8 37737710
    184153 8j5s:D (3.0) BS02 MG ? GO:0000166 ... P9WQJ5 38548954
    184154 8j5s:D (3.0) BS04 MG ? GO:0000166 ... P9WQJ5 38548954
    184155 8j5t:D (2.98) BS02 MG ? GO:0000166 ... P9WQJ5 38548954
    184156 8j5t:D (2.98) BS04 MG ? GO:0000166 ... P9WQJ5 38548954
    184157 8j62:A (2.5) BS03 ZN 3.5.4.38 GO:0003824 ... Q9HC16 37419875
    184158 8j62:B (2.5) BS03 ZN 3.5.4.38 GO:0003824 ... Q9HC16 37419875
    184159 8j6g:A (1.09) BS01 CU 1.4.3.21 GO:0005507 ... P46881 N/A
    184160 8j6m:A (2.77) BS01 ZN ? GO:0003723 ... Q9NXL6 38664565
    184161 8j6m:B (2.77) BS05 ZN ? GO:0003723 ... Q9NXL6 38664565
    184162 8j6o:A (3.25) BS01 ZN ? GO:0000902 ... P42212
    Q8NBJ9
    38664565
    184163 8j6o:B (3.25) BS01 ZN ? GO:0000902 ... P42212
    Q8NBJ9
    38664565
    184164 8j6w:A (2.66) BS01 ZN ? GO:0000976 ... P0A9A9 N/A
    184165 8j6w:A (2.66) BS02 ZN ? GO:0000976 ... P0A9A9 N/A
    184166 8j6w:A (2.66) BS03 ZN ? GO:0000976 ... P0A9A9 N/A
    184167 8j6w:A (2.66) BS04 ZN ? GO:0000976 ... P0A9A9 N/A
    184168 8j79:A (1.99) BS05 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 N/A
    184169 8j79:A (1.99) BS06 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 N/A
    184170 8j79:B (1.99) BS05 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 N/A
    184171 8j79:B (1.99) BS06 CA 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 N/A
    184172 8j7f:A (2.6) BS05 CA ? GO:0005216 ... R1EKX3
    R1FVI4
    N/A
    184173 8j7f:B (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4
    N/A
    184174 8j7f:C (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4
    N/A
    184175 8j7u:A (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184176 8j7u:B (3.12) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184177 8j7w:A (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184178 8j7w:B (2.92) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184179 8j7y:A (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184180 8j7y:B (3.4) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184181 8j80:B (2.68) BS01 ZN ? GO:0000139 ... Q8NEW0 37553324
    184182 8j85:A (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184183 8j85:A (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184184 8j85:B (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184185 8j85:B (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184186 8j85:C (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184187 8j85:C (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184188 8j85:D (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184189 8j85:D (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184190 8j85:E (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184191 8j85:E (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184192 8j85:F (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184193 8j85:F (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184194 8j85:G (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184195 8j85:G (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184196 8j85:H (2.7) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184197 8j85:H (2.7) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    184198 8j86:A (3.22) BS03 CA 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    184199 8j8f:A (2.98) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    184200 8j8f:A (2.98) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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