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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183801 8ira:A (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183802 8ira:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183803 8ira:D (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183804 8ira:J (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183805 8ira:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183806 8ira:a (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183807 8ira:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183808 8ira:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183809 8ira:d (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183810 8ira:j (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183811 8ira:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183812 8irb:A (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183813 8irb:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183814 8irb:D (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183815 8irb:J (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183816 8irb:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183817 8irb:a (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183818 8irb:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183819 8irb:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183820 8irb:d (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183821 8irb:j (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183822 8irb:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183823 8irc:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183824 8irc:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183825 8irc:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183826 8irc:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183827 8irc:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183828 8irc:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183829 8irc:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183830 8irc:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183831 8irc:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183832 8irc:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183833 8irc:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183834 8ird:A (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183835 8ird:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183836 8ird:D (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183837 8ird:J (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183838 8ird:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183839 8ird:a (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183840 8ird:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183841 8ird:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183842 8ird:d (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183843 8ird:j (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183844 8ird:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183845 8ire:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183846 8ire:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183847 8ire:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183848 8ire:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183849 8ire:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183850 8ire:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183851 8ire:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183852 8ire:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183853 8ire:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183854 8ire:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183855 8ire:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183856 8irf:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183857 8irf:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183858 8irf:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183859 8irf:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183860 8irf:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183861 8irf:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183862 8irf:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183863 8irf:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183864 8irf:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183865 8irf:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183866 8irf:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183867 8irg:A (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183868 8irg:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183869 8irg:D (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183870 8irg:J (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183871 8irg:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183872 8irg:a (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183873 8irg:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183874 8irg:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183875 8irg:d (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183876 8irg:j (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183877 8irg:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183878 8irh:A (2.25) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183879 8irh:C (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183880 8irh:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183881 8irh:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183882 8irh:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183883 8irh:a (2.25) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183884 8irh:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183885 8irh:c (2.25) BS17 CA ? GO:0005737 ... D0VWR7 38297122
    183886 8irh:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183887 8irh:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183888 8irh:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183889 8iri:A (2.25) BS09 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183890 8iri:C (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183891 8iri:D (2.25) BS06 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183892 8iri:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183893 8iri:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183894 8iri:a (2.25) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183895 8iri:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183896 8iri:c (2.25) BS17 CA ? GO:0005737 ... D0VWR7 38297122
    183897 8iri:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183898 8iri:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183899 8iri:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183900 8is4:A (1.9) BS02 ZN N/A GO:0016787 ... N/A 37680460
    183901 8is4:B (1.9) BS02 ZN N/A GO:0016787 ... N/A 37680460
    183902 8is5:A (2.1) BS01 ZN N/A GO:0016787 ... N/A 37680460
    183903 8is5:B (2.1) BS01 ZN N/A GO:0016787 ... N/A 37680460
    183904 8is7:A (1.6) BS03 MG N/A GO:0003824 ... B9UXM0 N/A
    183905 8is7:A (1.6) BS04 MG N/A GO:0003824 ... B9UXM0 N/A
    183906 8is7:A (1.6) BS05 MG N/A GO:0003824 ... B9UXM0 N/A
    183907 8is8:A (2.3) BS03 MG N/A GO:0003824 ... B9UXM0 N/A
    183908 8is8:A (2.3) BS04 MG N/A GO:0003824 ... B9UXM0 N/A
    183909 8is8:A (2.3) BS05 MG N/A GO:0003824 ... B9UXM0 N/A
    183910 8is9:A (1.59) BS02 MG N/A GO:0003824 ... B9UXM0 N/A
    183911 8is9:A (1.59) BS03 MG N/A GO:0003824 ... B9UXM0 N/A
    183912 8is9:A (1.59) BS04 MG N/A GO:0003824 ... B9UXM0 N/A
    183913 8itg:A (2.25) BS02 CA ? N/A N/A 37550286
    183914 8ith:A (2.55) BS01 CA ? N/A N/A 37550286
    183915 8itn:A (2.6) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    183916 8itn:C (2.6) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    183917 8ito:A (2.1) BS01 FE ? GO:0005506 ... Q726L3 N/A
    183918 8ito:B (2.1) BS01 FE ? GO:0005506 ... Q726L3 N/A
    183919 8itp:B (3.0) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    183920 8itp:D (3.0) BS01 ZN 3.4.19.12 GO:0004843 ... Q22240 37740002
    183921 8itv:A (2.3) BS01 MG 3.6.5.- GO:0000054 ... P62826 N/A
    183922 8ity:A (3.9) BS02 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    183923 8ity:A (3.9) BS03 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    183924 8ity:A (3.9) BS04 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    183925 8ity:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    183926 8ity:I (3.9) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    183927 8ity:J (3.9) BS01 ZN ? GO:0000428 ... P62875 37165065
    183928 8ity:L (3.9) BS01 ZN ? GO:0000428 ... P53803 37165065
    183929 8iu7:A (1.86) BS01 MG ? GO:0003676 ... A0A133PVC4 N/A
    183930 8iu7:A (1.86) BS02 MG ? GO:0003676 ... A0A133PVC4 N/A
    183931 8iu7:B (1.86) BS01 MG ? GO:0003676 ... A0A133PVC4 N/A
    183932 8iu7:B (1.86) BS02 MG ? GO:0003676 ... A0A133PVC4 N/A
    183933 8iu7:C (1.86) BS01 MG ? GO:0003676 ... A0A133PVC4 N/A
    183934 8iu7:C (1.86) BS02 MG ? GO:0003676 ... A0A133PVC4 N/A
    183935 8iu7:D (1.86) BS01 MG ? GO:0003676 ... A0A133PVC4 N/A
    183936 8iu7:D (1.86) BS02 MG ? GO:0003676 ... A0A133PVC4 N/A
    183937 8iue:A (4.1) BS01 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    183938 8iue:A (4.1) BS02 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    183939 8iue:A (4.1) BS03 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    183940 8iue:B (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    183941 8iue:I (4.1) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    183942 8iue:J (4.1) BS01 ZN ? GO:0000428 ... P62875 37165065
    183943 8iue:L (4.1) BS01 ZN ? GO:0000428 ... P53803 37165065
    183944 8iuf:5B (2.81) BS01 ZN N/A N/A N/A 38388527
    183945 8iuf:C1 (2.81) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    183946 8iuf:C1 (2.81) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    183947 8iuf:C2 (2.81) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    183948 8iuf:C2 (2.81) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    183949 8iuf:E7 (2.81) BS01 ZN N/A N/A N/A 38388527
    183950 8iuf:S6 (2.81) BS01 ZN N/A N/A N/A 38388527
    183951 8iug:C (2.86) BS06 CA ? GO:0005506 ... Q83XC9 37468106
    183952 8iug:L (2.86) BS07 MN ? GO:0009772 ... Q83XD0 37468106
    183953 8iug:M (2.86) BS06 MN ? GO:0009772 ... Q83XD0 37468106
    183954 8iuh:A (3.4) BS03 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    183955 8iuh:A (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... O14802 37165065
    183956 8iuh:A (3.4) BS05 MG 2.7.7.6 GO:0000287 ... O14802 37165065
    183957 8iuh:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... Q9NW08 37165065
    183958 8iuh:I (3.4) BS01 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    183959 8iuh:I (3.4) BS02 ZN ? GO:0000428 ... Q9Y2Y1 37165065
    183960 8iuh:J (3.4) BS01 ZN ? GO:0000428 ... P62875 37165065
    183961 8iuh:L (3.4) BS01 ZN ? GO:0000428 ... P53803 37165065
    183962 8iuj:5B (3.06) BS01 ZN N/A N/A N/A 38388527
    183963 8iuj:5b (3.06) BS01 ZN N/A N/A N/A 38388527
    183964 8iuj:C1 (3.06) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    183965 8iuj:C1 (3.06) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    183966 8iuj:C2 (3.06) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    183967 8iuj:C2 (3.06) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    183968 8iuj:c1 (3.06) BS03 CU 7.1.1.9 GO:0004129 ... Q34463 38388527
    183969 8iuj:c1 (3.06) BS04 MG 7.1.1.9 GO:0004129 ... Q34463 38388527
    183970 8iuj:c2 (3.06) BS01 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    183971 8iuj:c2 (3.06) BS02 CU 7.1.1.9 GO:0004129 ... Q9XN19 38388527
    183972 8iun:C (2.85) BS05 CA ? GO:0005506 ... A7NQE7 37468106
    183973 8iun:L (2.85) BS02 MN ? GO:0009772 ... A7NQE8 37468106
    183974 8iun:M (2.85) BS03 MN ? GO:0009772 ... A7NQE8 37468106
    183975 8ius:A (2.14) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183976 8ius:A (2.14) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183977 8ius:B (2.14) BS01 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183978 8ius:B (2.14) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183979 8iut:A () BS01 MN 3.5.3.25 N/A N/A N/A
    183980 8iut:A () BS02 MN 3.5.3.25 N/A N/A N/A
    183981 8iut:B () BS01 CU 3.5.3.25 N/A N/A N/A
    183982 8iut:B () BS02 CU1 3.5.3.25 N/A N/A N/A
    183983 8iut:B () BS03 CU1 3.5.3.25 N/A N/A N/A
    183984 8iuu:A (1.26) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183985 8iuu:A (1.26) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183986 8iuu:B (1.26) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183987 8iuu:B (1.26) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183988 8iuv:A (1.75) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183989 8iuv:A (1.75) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183990 8iuv:B (1.75) BS01 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183991 8iuv:B (1.75) BS02 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183992 8iuw:A (1.5) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183993 8iuw:A (1.5) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183994 8iuw:B (1.5) BS01 CU 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183995 8iuw:B (1.5) BS02 CU1 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183996 8iuw:B (1.5) BS03 MG 3.5.3.25 GO:0004053 ... D2Z025 N/A
    183997 8iw5:B (1.7) BS01 CA ? N/A Q8C8U0 37874676
    183998 8iwh:D (2.68) BS05 FE2 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    183999 8iwh:d (2.68) BS03 FE2 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    184000 8iwp:A (3.59) BS01 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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