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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183601 8imy:G (3.22) BS06 MG ? GO:0003923 ... O43292 37684232
    183602 8imy:K (3.22) BS01 CA 3.-.-.- GO:0003923 ... Q92643 37684232
    183603 8in2:A (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 N/A
    183604 8in2:B (3.08) BS01 FE 1.13.11.29 GO:0005737 ... Q70FG7 N/A
    183605 8in8:C (3.0) BS03 MG ? GO:0003674 ... Q74DF5 37311833
    183606 8ing:A (1.98) BS03 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    183607 8inr:R (2.73) BS02 CA ? GO:0004930 ... P03435
    P33032    		 37524700
    183608 8io6:A (2.68) BS02 MG ? GO:0003824 ... S6CP45 37349485
    183609 8io6:B (2.68) BS03 MG ? GO:0003824 ... S6CP45 37349485
    183610 8io6:C (2.68) BS02 MG ? GO:0003824 ... S6CP45 37349485
    183611 8io6:D (2.68) BS03 MG ? GO:0003824 ... S6CP45 37349485
    183612 8io6:E (2.68) BS02 MG ? GO:0003824 ... S6CP45 37349485
    183613 8io6:F (2.68) BS03 MG ? GO:0003824 ... S6CP45 37349485
    183614 8io6:G (2.68) BS02 MG ? GO:0003824 ... S6CP45 37349485
    183615 8io6:H (2.68) BS03 MG ? GO:0003824 ... S6CP45 37349485
    183616 8io7:A (2.62) BS02 MG ? GO:0003824 ... S6CP45 37349485
    183617 8io7:B (2.62) BS03 MG ? GO:0003824 ... S6CP45 37349485
    183618 8io8:A (2.17) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183619 8io8:B (2.17) BS05 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183620 8io9:A (2.36) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183621 8io9:B (2.36) BS05 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183622 8io9:C (2.36) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183623 8io9:D (2.36) BS05 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183624 8io9:E (2.36) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183625 8io9:F (2.36) BS05 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183626 8io9:G (2.36) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183627 8io9:H (2.36) BS05 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183628 8io9:I (2.36) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183629 8io9:J (2.36) BS04 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183630 8io9:K (2.36) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183631 8io9:L (2.36) BS05 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183632 8ioa:A (2.63) BS01 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183633 8ioa:B (2.63) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183634 8ioc:R (2.86) BS02 CA ? GO:0002027 ... P03435
    P41968    		 37524700
    183635 8iod:R (2.59) BS02 CA ? GO:0004930 ... P03435
    P33032    		 37524700
    183636 8ioe:A (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183637 8ioe:B (2.86) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183638 8ioe:C (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183639 8ioe:D (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183640 8ioe:E (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183641 8ioe:F (2.86) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183642 8ioe:G (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183643 8ioe:H (2.86) BS03 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183644 8ioe:I (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183645 8ioe:J (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183646 8ioe:K (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183647 8ioe:L (2.86) BS02 MG 4.1.2.- GO:0003824 ... Q31LF9 37349485
    183648 8iok:A (1.991) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183649 8ioo:A (2.0) BS01 MG ? GO:0003676 ... Q9RW43 38804263
    183650 8ioo:A (2.0) BS02 MG ? GO:0003676 ... Q9RW43 38804263
    183651 8ioo:B (2.0) BS01 MG ? GO:0003676 ... Q9RW43 38804263
    183652 8ioo:B (2.0) BS02 MG ? GO:0003676 ... Q9RW43 38804263
    183653 8ioo:C (2.0) BS01 MG ? GO:0003676 ... Q9RW43 38804263
    183654 8ioo:C (2.0) BS02 MG ? GO:0003676 ... Q9RW43 38804263
    183655 8ip8:DA (2.9) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    183656 8ip8:DB (2.9) BS02 MG ? GO:0003723 ... Q7X748 38267667
    183657 8ip8:GB (2.9) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    183658 8ip8:PB (2.9) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    183659 8ip8:WA (2.9) BS03 ZN ? GO:0003735 ... W5HX73 38267667
    183660 8ip8:db (2.9) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    183661 8ip8:ja (2.9) BS02 MG ? GO:0003723 ... A0A1D5SLI4 38267667
    183662 8ip8:ka (2.9) BS02 MG ? GO:0000028 ... W5D067 38267667
    183663 8ip8:wa (2.9) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    183664 8ip9:db (3.0) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    183665 8ip9:ja (3.0) BS02 MG ? GO:0003723 ... A0A1D5SLI4 38267667
    183666 8ip9:ka (3.0) BS02 MG ? GO:0000028 ... W5D067 38267667
    183667 8ip9:wa (3.0) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    183668 8ipa:DA (3.4) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    183669 8ipa:DB (3.4) BS02 MG ? GO:0003723 ... Q7X748 38267667
    183670 8ipa:GB (3.4) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    183671 8ipa:PB (3.4) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    183672 8ipa:WA (3.4) BS02 ZN ? GO:0003735 ... W5HX73 38267667
    183673 8ipa:db (3.4) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    183674 8ipa:wa (3.4) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    183675 8ipb:DA (3.4) BS03 MG ? GO:0002181 ... W5ECL2 38267667
    183676 8ipb:GB (3.4) BS02 ZN ? GO:0003735 ... D8L9P6 38267667
    183677 8ipb:PB (3.4) BS02 MG ? GO:0003735 ... A0A3B6RFY8 38267667
    183678 8ipb:WA (3.4) BS02 ZN ? GO:0003735 ... W5HX73 38267667
    183679 8ipb:db (3.4) BS02 ZN ? GO:0003729 ... A0A3B6LWE1 38267667
    183680 8ipb:ka (3.4) BS02 MG ? GO:0000028 ... W5D067 38267667
    183681 8ipb:wa (3.4) BS02 ZN ? GO:0002181 ... A0A3B6LU46 38267667
    183682 8ipp:B (2.007) BS02 MG N/A N/A N/A 38738955
    183683 8ipp:B (2.007) BS03 MG N/A N/A N/A 38738955
    183684 8ipr:C (3.0) BS02 MG 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    183685 8ipr:E (3.0) BS02 MG 3.6.3.25 GO:0005524 ... A0QXA6 37144855
    183686 8iq0:A (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183687 8iq0:A (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183688 8iq0:B (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183689 8iq0:B (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183690 8iq0:C (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183691 8iq0:C (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183692 8iq0:D (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183693 8iq0:D (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183694 8iq0:E (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183695 8iq0:E (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183696 8iq0:F (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183697 8iq0:F (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183698 8iq0:G (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183699 8iq0:G (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183700 8iq0:H (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183701 8iq0:H (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183702 8iq0:I (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183703 8iq0:I (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183704 8iq0:J (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183705 8iq0:J (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183706 8iq0:K (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183707 8iq0:K (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183708 8iq0:L (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183709 8iq0:L (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183710 8iq0:M (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183711 8iq0:M (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183712 8iq0:N (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183713 8iq0:N (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183714 8iq0:O (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183715 8iq0:O (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183716 8iq0:P (1.88) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183717 8iq0:P (1.88) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183718 8iq1:A (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183719 8iq1:A (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183720 8iq1:B (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183721 8iq1:B (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183722 8iq1:C (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183723 8iq1:C (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183724 8iq1:D (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183725 8iq1:D (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183726 8iq1:E (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183727 8iq1:E (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183728 8iq1:F (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183729 8iq1:F (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183730 8iq1:G (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183731 8iq1:G (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183732 8iq1:H (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 37421623
    183733 8iq1:H (1.8) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 37421623
    183734 8iqc:A (2.0) BS01 MN ? N/A A0A0C5B022 37587714
    183735 8iqc:A (2.0) BS02 MN ? N/A A0A0C5B022 37587714
    183736 8iqc:B (2.0) BS01 MN ? N/A A0A0C5B022 37587714
    183737 8iqc:B (2.0) BS02 MN ? N/A A0A0C5B022 37587714
    183738 8iqd:A (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    183739 8iqd:A (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    183740 8iqd:B (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    183741 8iqd:B (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    183742 8iqd:C (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    183743 8iqd:C (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    183744 8iqd:D (2.39) BS01 MN ? N/A A0A0C5B022 37587714
    183745 8iqd:D (2.39) BS02 MN ? N/A A0A0C5B022 37587714
    183746 8ir5:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183747 8ir5:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183748 8ir5:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183749 8ir5:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183750 8ir5:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183751 8ir5:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183752 8ir5:c (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183753 8ir5:c (2.15) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183754 8ir5:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183755 8ir5:j (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183756 8ir5:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183757 8ir6:A (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183758 8ir6:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183759 8ir6:D (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183760 8ir6:J (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183761 8ir6:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183762 8ir6:a (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183763 8ir6:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183764 8ir6:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183765 8ir6:d (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183766 8ir6:j (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183767 8ir6:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183768 8ir7:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183769 8ir7:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183770 8ir7:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183771 8ir7:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183772 8ir7:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183773 8ir7:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183774 8ir7:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183775 8ir7:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183776 8ir7:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183777 8ir7:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183778 8ir7:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183779 8ir8:A (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183780 8ir8:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183781 8ir8:D (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183782 8ir8:J (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183783 8ir8:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183784 8ir8:a (2.25) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183785 8ir8:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183786 8ir8:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183787 8ir8:d (2.25) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183788 8ir8:j (2.25) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183789 8ir8:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183790 8ir9:A (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183791 8ir9:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183792 8ir9:D (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183793 8ir9:J (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183794 8ir9:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    183795 8ir9:a (2.2) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    183796 8ir9:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    183797 8ir9:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    183798 8ir9:d (2.2) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    183799 8ir9:j (2.2) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    183800 8ir9:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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