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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183401 8igw:H (4.2) BS02 MG 7.2.2.1 GO:0005515 ... Q08636 37414880
    183402 8igw:I (4.2) BS02 MG 7.2.2.1 GO:0005515 ... Q08636 37414880
    183403 8igw:J (4.2) BS02 MG ? GO:0005515 ... Q08637 37414880
    183404 8igw:L (4.2) BS02 MG ? GO:0005515 ... Q08637 37414880
    183405 8ih7:A (2.48) BS01 ZN 4.1.3.39 GO:0003824 ... Q9KWS0 N/A
    183406 8ih7:C (2.48) BS01 ZN 4.1.3.39 GO:0003824 ... Q9KWS0 N/A
    183407 8ihg:A (2.858) BS01 ZN 1.13.11.74 GO:0008198 ... O33477 N/A
    183408 8ihg:C (2.858) BS02 ZN 1.13.11.74 GO:0008198 ... O33477 N/A
    183409 8ihn:L (3.37) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 37845487
    183410 8ihn:L (3.37) BS03 CA 3.5.1.98 GO:0000082 ... P32561 37845487
    183411 8iho:A (2.55) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 37239980
    183412 8iho:C (2.55) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 37239980
    183413 8iho:C (2.55) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 37239980
    183414 8ihp:M (3.0) BS01 CA ? N/A P98155 37098345
    183415 8ihp:N (3.0) BS01 CA ? N/A P98155 37098345
    183416 8ihp:O (3.0) BS01 CA ? N/A P98155 37098345
    183417 8ihq:A (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183418 8ihq:A (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183419 8ihq:B (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183420 8ihq:B (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183421 8ihq:C (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183422 8ihq:C (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183423 8ihq:D (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183424 8ihq:D (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183425 8ihq:E (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183426 8ihq:E (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183427 8ihq:F (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183428 8ihq:F (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183429 8ihq:G (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183430 8ihq:G (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183431 8ihq:H (2.71) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183432 8ihq:H (2.71) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183433 8ihr:A (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183434 8ihr:A (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183435 8ihr:B (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183436 8ihr:B (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183437 8ihr:C (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183438 8ihr:C (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183439 8ihr:D (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183440 8ihr:D (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183441 8ihr:E (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183442 8ihr:E (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183443 8ihr:F (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183444 8ihr:F (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183445 8ihr:G (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183446 8ihr:G (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183447 8ihr:H (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183448 8ihr:H (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183449 8ihs:A (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183450 8ihs:A (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183451 8ihs:B (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183452 8ihs:B (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183453 8ihs:C (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183454 8ihs:C (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183455 8ihs:D (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183456 8ihs:D (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183457 8ihs:E (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183458 8ihs:E (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183459 8ihs:F (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183460 8ihs:F (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183461 8ihs:G (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183462 8ihs:G (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183463 8ihs:H (2.5) BS01 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183464 8ihs:H (2.5) BS02 ZN ? GO:0016787 ... A0A0S1B1B6 37331057
    183465 8iht:L (3.72) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37845487
    183466 8iht:L (3.72) BS02 CA 3.5.1.98 GO:0000082 ... P32561 37845487
    183467 8ihw:A (1.7) BS01 MG 3.2.1.4 GO:0004553 ... I2FI81 N/A
    183468 8ihw:A (1.7) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    183469 8ihx:A (1.6) BS01 MG 3.2.1.4 GO:0004553 ... I2FI81 N/A
    183470 8ihx:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    183471 8ihy:A (1.6) BS01 MG 3.2.1.4 GO:0004553 ... I2FI81 N/A
    183472 8ihy:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    183473 8ihz:A (2.22) BS01 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 38923188
    183474 8ii0:A (2.04) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 38923188
    183475 8ii2:B (1.798) BS01 CA ? N/A P02766 37311373
    183476 8iib:A (2.69) BS01 MG ? GO:0003723 ... A0A386NBK9 37156298
    183477 8iib:B (2.69) BS01 MG ? GO:0003723 ... A0A386NBK9 37156298
    183478 8ij1:D (4.2) BS01 ZN ? GO:0002070 ... Q9UK73 38360992
    183479 8ij1:I (4.2) BS01 ZN ? GO:0002070 ... Q9UK73 38360992
    183480 8ij1:R (4.2) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38360992
    183481 8ij1:R (4.2) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38360992
    183482 8ij1:R (4.2) BS03 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 38360992
    183483 8ij9:A (2.04) BS02 MG 3.6.5.2 GO:0003924 ... P61294 37172719
    183484 8ij9:B (2.04) BS02 MG 3.6.5.2 GO:0003924 ... P61294 37172719
    183485 8ijl:A (2.62) BS02 MG 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    183486 8ijn:A (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    183487 8ijn:A (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    183488 8ijn:F (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    183489 8ijn:N (1.8) BS04 CU 7.1.1.9 GO:0004129 ... P00396 20385840
    183490 8ijn:N (1.8) BS05 MG 7.1.1.9 GO:0004129 ... P00396 20385840
    183491 8ijn:S (1.8) BS01 ZN ? GO:0005740 ... P00428 20385840
    183492 8ijv:A (2.1) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    183493 8ijw:A (2.19) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    183494 8ijx:A (2.08) BS01 MG 7.2.2.19 GO:0000166 ... P19156 37726448
    183495 8ik6:A (3.3) BS01 ZN N/A N/A O60260 39221915
    183496 8ik6:A (3.3) BS02 ZN N/A N/A O60260 39221915
    183497 8ik6:A (3.3) BS03 ZN N/A N/A O60260 39221915
    183498 8ik6:A (3.3) BS04 ZN N/A N/A O60260 39221915
    183499 8ik6:A (3.3) BS05 ZN N/A N/A O60260 39221915
    183500 8ik6:A (3.3) BS06 ZN N/A N/A O60260 39221915
    183501 8ik6:C (3.3) BS01 ZN N/A N/A O60260 39221915
    183502 8ik6:C (3.3) BS02 ZN N/A N/A O60260 39221915
    183503 8ik6:C (3.3) BS03 ZN N/A N/A O60260 39221915
    183504 8ik6:C (3.3) BS04 ZN N/A N/A O60260 39221915
    183505 8ik6:C (3.3) BS05 ZN N/A N/A O60260 39221915
    183506 8ik6:C (3.3) BS06 ZN N/A N/A O60260 39221915
    183507 8ik6:C (3.3) BS07 ZN N/A N/A O60260 39221915
    183508 8ik6:C (3.3) BS08 ZN N/A N/A O60260 39221915
    183509 8ikm:A (1.92) BS01 ZN N/A N/A O60260 39221915
    183510 8ikm:A (1.92) BS02 ZN N/A N/A O60260 39221915
    183511 8ikm:A (1.92) BS03 ZN N/A N/A O60260 39221915
    183512 8ikm:A (1.92) BS04 ZN N/A N/A O60260 39221915
    183513 8ikm:A (1.92) BS05 ZN N/A N/A O60260 39221915
    183514 8ikm:A (1.92) BS06 ZN N/A N/A O60260 39221915
    183515 8ikt:A (2.6) BS01 ZN N/A N/A O60260 39221915
    183516 8ikt:A (2.6) BS02 ZN N/A N/A O60260 39221915
    183517 8ikt:A (2.6) BS03 ZN N/A N/A O60260 39221915
    183518 8ikt:A (2.6) BS04 ZN N/A N/A O60260 39221915
    183519 8ikt:A (2.6) BS05 ZN N/A N/A O60260 39221915
    183520 8ikt:A (2.6) BS06 ZN N/A N/A O60260 39221915
    183521 8ikv:A (2.35) BS01 ZN N/A N/A O60260 39221915
    183522 8ikv:A (2.35) BS02 ZN N/A N/A O60260 39221915
    183523 8ikv:A (2.35) BS03 ZN N/A N/A O60260 39221915
    183524 8ikv:A (2.35) BS04 ZN N/A N/A O60260 39221915
    183525 8ikv:A (2.35) BS05 ZN N/A N/A O60260 39221915
    183526 8ikv:A (2.35) BS06 ZN N/A N/A O60260 39221915
    183527 8ikv:A (2.35) BS07 ZN N/A N/A O60260 39221915
    183528 8ikv:A (2.35) BS08 ZN N/A N/A O60260 39221915
    183529 8ikv:C (2.35) BS01 ZN N/A N/A O60260 39221915
    183530 8ikv:C (2.35) BS02 ZN N/A N/A O60260 39221915
    183531 8ikv:C (2.35) BS03 ZN N/A N/A O60260 39221915
    183532 8ikv:C (2.35) BS04 ZN N/A N/A O60260 39221915
    183533 8ikv:C (2.35) BS05 ZN N/A N/A O60260 39221915
    183534 8ikv:C (2.35) BS06 ZN N/A N/A O60260 39221915
    183535 8ikv:C (2.35) BS07 ZN N/A N/A O60260 39221915
    183536 8ikv:C (2.35) BS08 ZN N/A N/A O60260 39221915
    183537 8ikz:A (1.75) BS01 MG 4.2.1.9 GO:0003824 ... Q9LIR4 N/A
    183538 8il8:A (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 N/A
    183539 8il8:B (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 N/A
    183540 8il8:C (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 N/A
    183541 8il8:D (1.769) BS01 FE2 4.1.2.- GO:0005856 ... A0A0A2N3A3 N/A
    183542 8ild:A (2.25) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183543 8ild:B (2.25) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183544 8ile:A (3.0) BS02 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183545 8ile:A (3.0) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183546 8ile:B (3.0) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183547 8ile:B (3.0) BS04 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183548 8ilf:A (2.3) BS02 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183549 8ilf:B (2.3) BS05 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183550 8ilg:A (1.805) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183551 8ilg:B (1.805) BS03 MN 2.7.7.7 GO:0003677 ... P42494 37958741
    183552 8ilh:A (2.1) BS02 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183553 8ilh:A (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183554 8ilh:B (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183555 8ilh:B (2.1) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183556 8ilh:C (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183557 8ilh:C (2.1) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183558 8ilh:D (2.1) BS02 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183559 8ilh:D (2.1) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183560 8ili:A (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183561 8ili:A (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183562 8ili:B (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183563 8ili:B (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183564 8ili:C (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183565 8ili:C (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183566 8ili:D (1.9) BS03 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183567 8ili:D (1.9) BS04 MG 2.7.7.7 GO:0003677 ... P42494 37958741
    183568 8im2:A (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183569 8im2:B (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183570 8im2:C (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183571 8im2:D (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183572 8im2:E (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183573 8im2:F (2.81) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183574 8im3:A (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183575 8im3:B (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183576 8im3:C (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183577 8im3:D (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183578 8im3:E (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183579 8im3:F (2.78) BS01 CO 1.13.11.27 GO:0000139 ... P32754 37794595
    183580 8im5:A (-1.00) BS01 ZN 2.3.2.31 N/A Q9WUB0 37595872
    183581 8im8:A (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183582 8im8:A (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183583 8im8:B (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183584 8im8:B (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183585 8im8:C (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183586 8im8:C (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183587 8im8:D (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183588 8im8:D (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    183589 8imd:A (1.45) BS01 CU N/A GO:0005507 ... N/A 37442237
    183590 8imd:A (1.45) BS02 ZN N/A GO:0005507 ... N/A 37442237
    183591 8imd:B (1.45) BS01 CU N/A GO:0005507 ... N/A 37442237
    183592 8imd:B (1.45) BS02 ZN N/A GO:0005507 ... N/A 37442237
    183593 8ime:A (2.63) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    183594 8ime:B (2.63) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    183595 8imf:A (2.4) BS01 ZN 2.7.7.86 N/A Q8N884 37666112
    183596 8imf:B (2.4) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    183597 8img:A (1.8) BS01 ZN 2.7.7.86 N/A Q8N884 37666112
    183598 8img:B (1.8) BS02 ZN 2.7.7.86 N/A Q8N884 37666112
    183599 8imx:G (2.85) BS01 MG ? GO:0003923 ... O43292 37684232
    183600 8imx:K (2.85) BS03 CA 3.-.-.- GO:0003923 ... Q92643 37684232
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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