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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183201 8i91:A (3.3) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 37684251
    183202 8i91:C (3.3) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 37684251
    183203 8i92:A (3.2) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 37684251
    183204 8i92:C (3.2) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 37684251
    183205 8i93:A (3.1) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 37684251
    183206 8i93:C (3.1) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0001618 ... Q9BYF1 37684251
    183207 8i9i:A (3.3) BS02 ZN 6.1.1.17 GO:0000049 ... P04805 N/A
    183208 8i9i:B (3.3) BS02 ZN 6.1.1.17 GO:0000049 ... P04805 N/A
    183209 8i9p:Lj (3.0) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183210 8i9r:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183211 8i9t:Lj (3.6) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183212 8i9v:CQ (3.1) BS02 ZN ? GO:0005730 ... G0S497 37129998
    183213 8i9v:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183214 8i9w:CQ (3.1) BS02 ZN ? GO:0005730 ... G0S497 37129998
    183215 8i9w:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183216 8i9x:CQ (2.8) BS02 ZN ? GO:0005730 ... G0S497 37129998
    183217 8i9x:Lj (2.8) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183218 8i9y:CQ (3.1) BS02 ZN ? GO:0005730 ... G0S497 37129998
    183219 8i9y:Lj (3.1) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183220 8i9z:CQ (2.7) BS02 ZN ? GO:0005730 ... G0S497 37129998
    183221 8i9z:Lj (2.7) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183222 8ia0:CQ (2.7) BS02 ZN ? GO:0005730 ... G0S497 37129998
    183223 8ia0:Lj (2.7) BS03 ZN ? GO:0003723 ... G0S101 37129998
    183224 8ia0:Lp (2.7) BS01 ZN ? GO:0003735 ... G0S6B0 37129998
    183225 8ia9:A (2.5) BS01 MG ? GO:0003824 ... Q9ALN2 37703985
    183226 8ia9:B (2.5) BS01 MG ? GO:0003824 ... Q9ALN2 37703985
    183227 8iaa:A (2.1) BS02 MG ? GO:0003824 ... Q9ALN2 37703985
    183228 8iaa:B (2.1) BS02 MG ? GO:0003824 ... Q9ALN2 37703985
    183229 8iag:A (1.5) BS02 MG N/A GO:0004601 ... N/A N/A
    183230 8iag:B (1.5) BS02 MG N/A GO:0004601 ... N/A N/A
    183231 8ian:A (2.08) BS01 CA N/A N/A N/A 38647782
    183232 8ian:B (2.08) BS01 CA N/A N/A N/A 38647782
    183233 8iao:R (4.2) BS01 ZN N/A N/A P52503 N/A
    183234 8iap:R (3.2) BS01 ZN N/A N/A P52503 N/A
    183235 8iat:A (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183236 8iat:B (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183237 8iat:C (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183238 8iat:D (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183239 8iau:A (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183240 8iau:B (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183241 8iau:C (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183242 8iau:D (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183243 8iau:F (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183244 8iau:G (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183245 8iau:H (2.0) BS02 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183246 8iaw:A (2.89) BS01 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183247 8iaw:B (2.89) BS01 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183248 8iax:A (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183249 8iax:B (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183250 8iax:C (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183251 8iax:D (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183252 8iax:E (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183253 8iax:F (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183254 8iax:G (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183255 8iax:H (1.8) BS03 MG 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    183256 8iaz:A (3.0) BS04 ZN N/A N/A N/A 38575718
    183257 8ib4:R (4.3) BS01 ZN N/A N/A P52503 N/A
    183258 8ib5:R (3.3) BS01 ZN N/A N/A P52503 N/A
    183259 8ib9:R (4.3) BS01 ZN N/A N/A P52503 N/A
    183260 8iba:R (3.2) BS01 ZN N/A N/A P52503 N/A
    183261 8ibd:R (4.2) BS01 ZN N/A N/A P52503 N/A
    183262 8ibe:R (3.3) BS01 ZN N/A N/A P52503 N/A
    183263 8ibk:A (1.69) BS04 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    183264 8ibk:A (1.69) BS05 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    183265 8ibl:A (2.6) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    183266 8ibl:B (2.6) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    183267 8ibm:A (2.2) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    183268 8ibm:B (2.2) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    183269 8ibw:C (3.6) BS04 ZN ? GO:0003964 ... V9H052 37301196
    183270 8ibw:C (3.6) BS05 ZN ? GO:0003964 ... V9H052 37301196
    183271 8ibx:C (3.74) BS04 ZN ? GO:0003964 ... V9H052 37301196
    183272 8ibx:C (3.74) BS05 ZN ? GO:0003964 ... V9H052 37301196
    183273 8iby:C (3.47) BS02 ZN ? GO:0003964 ... V9H052 37301196
    183274 8ibz:C (3.04) BS02 ZN ? GO:0003964 ... V9H052 37301196
    183275 8ic1:A (1.8) BS09 CA N/A N/A N/A 37726269
    183276 8ic1:B (1.8) BS04 CA N/A N/A N/A 37726269
    183277 8ic1:C (1.8) BS09 CA N/A N/A N/A 37726269
    183278 8ic1:D (1.8) BS04 CA N/A N/A N/A 37726269
    183279 8ic2:R (6.3) BS01 ZN N/A N/A P52503 N/A
    183280 8ic3:R (3.2) BS01 ZN N/A N/A P52503 N/A
    183281 8ic6:A (1.75) BS01 MG N/A GO:0004553 ... N/A 37726269
    183282 8ic6:A (1.75) BS02 MG N/A GO:0004553 ... N/A 37726269
    183283 8ic6:B (1.75) BS01 MG N/A GO:0004553 ... N/A 37726269
    183284 8ic6:B (1.75) BS02 MG N/A GO:0004553 ... N/A 37726269
    183285 8ic6:B (1.75) BS03 MG N/A GO:0004553 ... N/A 37726269
    183286 8ic7:A (1.35) BS01 MG N/A GO:0004553 ... N/A 37726269
    183287 8ic7:A (1.35) BS02 MG N/A GO:0004553 ... N/A 37726269
    183288 8ic7:B (1.35) BS01 MG N/A GO:0004553 ... N/A 37726269
    183289 8ic7:B (1.35) BS02 MG N/A GO:0004553 ... N/A 37726269
    183290 8ic7:B (1.35) BS03 MG N/A GO:0004553 ... N/A 37726269
    183291 8ick:A (2.7) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183292 8ick:A (2.7) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183293 8ico:A (2.7) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183294 8icp:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183295 8icr:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183296 8icr:A (2.9) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183297 8ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183298 8ics:A (2.9) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183299 8ict:A (3.1) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183300 8ict:A (3.1) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183301 8icu:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183302 8icu:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183303 8icv:A (3.2) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183304 8icx:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    183305 8ide:A (3.21) BS01 MN 2.3.1.234 GO:0003725 ... A0A291ATS8 37427786
    183306 8idf:A (3.7) BS02 ZN 2.7.7.19
    2.7.7.52    		 GO:0003676 ... Q9H6E5 37563152
    183307 8ids:A (1.5) BS03 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    183308 8ids:A (1.5) BS04 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    183309 8ieg:A (3.44) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    183310 8ieg:A (3.44) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    183311 8ieg:B (3.44) BS01 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    183312 8ieg:B (3.44) BS02 ZN 2.3.2.27 GO:0004842 ... Q07457 37633270
    183313 8iej:A (3.12) BS01 ZN 2.3.2.27 GO:0004842 ... O75150 37633270
    183314 8iej:A (3.12) BS02 ZN 2.3.2.27 GO:0004842 ... O75150 37633270
    183315 8iej:M (3.12) BS01 ZN 2.3.2.27 GO:0004842 ... Q5VTR2 37633270
    183316 8iej:M (3.12) BS02 ZN 2.3.2.27 GO:0004842 ... Q5VTR2 37633270
    183317 8iem:P (3.35) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    183318 8ien:P (3.25) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    183319 8ieo:P (3.78) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    183320 8ies:P (3.73) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 37031211
    183321 8iex:A (-1.00) BS01 ZN ? GO:0003700 ... Q9SV15 36868077
    183322 8iey:A (2.0) BS01 FE 2.3.1.234 GO:0002949 ... O66986 N/A
    183323 8if2:A (2.78) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 37169744
    183324 8if8:B (3.1) BS01 CA 2.4.2.46 GO:0005886 ... P9WN03 37252995
    183325 8if8:C (3.1) BS01 CA 2.4.2.46 GO:0005886 ... P9WN03 37252995
    183326 8ifb:3 (2.43) BS02 ZN ? GO:0002181 ... P0A7Q6 38227611
    183327 8ifb:4 (2.43) BS03 ZN ? GO:0002181 ... P0A7M9 38227611
    183328 8ifb:C (2.43) BS02 MG ? GO:0000028 ... P0A7V3 38227611
    183329 8ifb:M (2.43) BS02 MG ? GO:0000049 ... P0A7S9 38227611
    183330 8ifb:c (2.43) BS02 MG ? GO:0000027 ... P60422 38227611
    183331 8ifb:c (2.43) BS03 MG ? GO:0000027 ... P60422 38227611
    183332 8ifb:d (2.43) BS02 MG ? GO:0000027 ... P60438 38227611
    183333 8ifb:d (2.43) BS03 MG ? GO:0000027 ... P60438 38227611
    183334 8ifb:d (2.43) BS04 MG ? GO:0000027 ... P60438 38227611
    183335 8ifb:d (2.43) BS05 MG ? GO:0000027 ... P60438 38227611
    183336 8ifb:l (2.43) BS04 MG ? GO:0000027 ... P0ADY7 38227611
    183337 8ifb:z (2.43) BS02 MG ? GO:0000027 ... P0A7N4 38227611
    183338 8ifc:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 38227611
    183339 8ifc:4 (2.9) BS03 MG ? GO:0002181 ... P0A7M9 38227611
    183340 8ifc:M (2.9) BS03 MG ? GO:0000049 ... P0A7S9 38227611
    183341 8ifc:S (2.9) BS02 MG ? GO:0000028 ... P0A7U3 38227611
    183342 8ifc:c (2.9) BS02 MG ? GO:0000027 ... P60422 38227611
    183343 8ifc:d (2.9) BS02 MG ? GO:0000027 ... P60438 38227611
    183344 8ifc:d (2.9) BS03 MG ? GO:0000027 ... P60438 38227611
    183345 8ifd:1D (2.59) BS02 MG ? GO:0002181 ... P62917 38227611
    183346 8ifd:1E (2.59) BS02 MG ? GO:0002181 ... P39023 38227611
    183347 8ifd:2P (2.59) BS02 MG ? GO:0000122 ... P62829 38227611
    183348 8ifd:2V (2.59) BS02 MG ? GO:0002181 ... P47914 38227611
    183349 8ifd:2Y (2.59) BS02 MG ? GO:0002181 ... P62910 38227611
    183350 8ifd:2Y (2.59) BS03 MG ? GO:0002181 ... P62910 38227611
    183351 8ifd:2Z (2.59) BS02 MG ? GO:0000049 ... P18077 38227611
    183352 8ifd:2a (2.59) BS02 MG ? GO:0002181 ... P49207 38227611
    183353 8ifd:2d (2.59) BS03 MG ? GO:0002181 ... P61927 38227611
    183354 8ifd:2d (2.59) BS04 ZN ? GO:0002181 ... P61927 38227611
    183355 8ifd:2g (2.59) BS02 ZN ? GO:0002181 ... P62987 38227611
    183356 8ifd:2j (2.59) BS02 ZN ? GO:0002181 ... P61513 38227611
    183357 8ifd:3C (2.59) BS02 ZN ? GO:0002181 ... P62854 38227611
    183358 8ife:1D (2.57) BS02 MG ? GO:0002181 ... P62917 38227611
    183359 8ife:1E (2.57) BS02 MG ? GO:0002181 ... P39023 38227611
    183360 8ife:2M (2.57) BS03 MG ? GO:0002181 ... Q02543 38227611
    183361 8ife:2P (2.57) BS02 MG ? GO:0000122 ... P62829 38227611
    183362 8ife:2Y (2.57) BS03 MG ? GO:0002181 ... P62910 38227611
    183363 8ife:2Y (2.57) BS04 MG ? GO:0002181 ... P62910 38227611
    183364 8ife:2Z (2.57) BS02 MG ? GO:0000049 ... P18077 38227611
    183365 8ife:2a (2.57) BS02 MG ? GO:0002181 ... P49207 38227611
    183366 8ife:2d (2.57) BS03 ZN ? GO:0002181 ... P61927 38227611
    183367 8ife:2g (2.57) BS02 ZN ? GO:0002181 ... P62987 38227611
    183368 8ife:2i (2.57) BS03 ZN ? GO:0002181 ... P83881 38227611
    183369 8ife:2j (2.57) BS02 ZN ? GO:0002181 ... P61513 38227611
    183370 8ife:3C (2.57) BS02 ZN ? GO:0002181 ... P62854 38227611
    183371 8ife:3E (2.57) BS02 ZN ? GO:0002181 ... P62273 38227611
    183372 8ife:3L (2.57) BS02 MG ? GO:0000028 ... P62263 38227611
    183373 8ifg:C (3.2) BS01 ZN 3.5.1.98 GO:0000785 ... O59702 37459529
    183374 8ifg:P (3.2) BS01 ZN ? GO:0005634 ... Q09698 37459529
    183375 8ifg:P (3.2) BS02 ZN ? GO:0005634 ... Q09698 37459529
    183376 8ifk:B (2.54) BS03 MG ? GO:0003676 ... A0A1I7NFD7 37932528
    183377 8ifl:B (3.11) BS03 MG ? GO:0003676 ... A0A1I7NFD7 37932528
    183378 8ifm:O (2.92) BS03 MG ? GO:0003676 ... A0A1I7NFD7 37932528
    183379 8ifo:A (2.2) BS03 ZN ? GO:0003700 ... P62508 36944284
    183380 8ifo:A (2.2) BS04 ZN ? GO:0003700 ... P62508 36944284
    183381 8ifo:B (2.2) BS03 ZN ? GO:0003700 ... P62508 36944284
    183382 8ifo:B (2.2) BS04 ZN ? GO:0003700 ... P62508 36944284
    183383 8ifo:F (2.2) BS03 ZN ? GO:0003700 ... P62508 36944284
    183384 8ifo:F (2.2) BS04 ZN ? GO:0003700 ... P62508 36944284
    183385 8ifx:A (2.0) BS01 FE 2.3.1.234 GO:0002949 ... O66986 N/A
    183386 8ify:F (2.55) BS01 ZN 3.4.-.- GO:0004180 ... A0A6J0Z472 37676003
    183387 8igf:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38580011
    183388 8igi:A (1.84) BS01 MN ? GO:0003677 ... O26054 37116395
    183389 8igr:J (3.1) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 37269829
    183390 8igr:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37269829
    183391 8igr:J (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37269829
    183392 8igs:J (3.4) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 37269829
    183393 8igs:J (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37269829
    183394 8igs:J (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37269829
    183395 8igt:A (1.56) BS01 ZN ? N/A Q7KYR7 37674084
    183396 8igv:B (3.15) BS02 MG 7.2.2.1 GO:0005515 ... Q08636 37414880
    183397 8igv:D (3.15) BS02 MG ? GO:0005515 ... Q08637 37414880
    183398 8igv:E (3.15) BS02 MG ? GO:0005515 ... Q08637 37414880
    183399 8igw:B (4.2) BS02 MG 7.2.2.1 GO:0005515 ... Q08636 37414880
    183400 8igw:D (4.2) BS02 MG ? GO:0005515 ... Q08637 37414880
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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