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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    183001 8hz2:B (2.6) BS02 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    183002 8hz2:B (2.6) BS03 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    183003 8hz2:B (2.6) BS04 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    183004 8hz2:B (2.6) BS05 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    183005 8hz6:A (1.605) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183006 8hz7:A (1.802) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183007 8hz9:A (2.011) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183008 8hza:A (1.69) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183009 8hzu:A (1.796) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183010 8i01:A (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183011 8i01:A (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183012 8i01:B (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183013 8i01:B (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183014 8i01:C (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183015 8i01:C (2.15) BS07 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183016 8i01:D (2.15) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183017 8i01:D (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183018 8i01:E (2.15) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183019 8i01:E (2.15) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183020 8i01:F (2.15) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183021 8i01:F (2.15) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183022 8i02:B (2.9) BS01 ZN 3.5.1.98 GO:0000785 ... O59702 37076472
    183023 8i02:F (2.9) BS01 ZN ? GO:0003674 ... Q09819 37076472
    183024 8i02:F (2.9) BS02 ZN ? GO:0003674 ... Q09819 37076472
    183025 8i02:G (2.9) BS01 ZN ? GO:0005634 ... Q09698 37076472
    183026 8i02:G (2.9) BS02 ZN ? GO:0005634 ... Q09698 37076472
    183027 8i02:G (2.9) BS03 ZN ? GO:0005634 ... Q09698 37076472
    183028 8i03:C (3.2) BS01 ZN 3.5.1.98 GO:0000785 ... O59702 37076472
    183029 8i03:D (3.2) BS01 ZN 3.5.1.98 GO:0000785 ... O59702 37076472
    183030 8i05:A (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183031 8i05:A (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183032 8i05:B (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183033 8i05:B (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183034 8i05:C (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183035 8i05:C (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183036 8i05:D (2.09) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183037 8i05:D (2.09) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183038 8i05:E (2.09) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183039 8i05:E (2.09) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183040 8i05:F (2.09) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183041 8i05:F (2.09) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183042 8i07:A (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183043 8i07:A (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183044 8i07:B (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183045 8i07:B (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183046 8i07:C (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183047 8i07:C (1.99) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183048 8i07:D (1.99) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183049 8i07:D (1.99) BS07 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183050 8i07:E (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183051 8i07:E (1.99) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183052 8i07:F (1.99) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183053 8i07:F (1.99) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183054 8i08:A (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183055 8i08:A (1.91) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183056 8i08:B (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183057 8i08:B (1.91) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183058 8i08:C (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183059 8i08:C (1.91) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183060 8i08:D (1.91) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183061 8i08:D (1.91) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183062 8i08:E (1.91) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183063 8i08:E (1.91) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183064 8i08:F (1.91) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183065 8i08:F (1.91) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    183066 8i0g:A (1.992) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183067 8i0k:A (2.86) BS01 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    183068 8i0k:B (2.86) BS02 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    183069 8i0k:B (2.86) BS04 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    183070 8i0p:7 (3.4) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183071 8i0p:7 (3.4) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183072 8i0p:7 (3.4) BS04 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183073 8i0p:C (3.4) BS02 MG N/A GO:0000398 ... Q15029 39068178
    183074 8i0p:K (3.4) BS03 ZN N/A GO:0003677 ... O60870 39068178
    183075 8i0r:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183076 8i0r:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183077 8i0r:7 (3.0) BS04 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183078 8i0r:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    183079 8i0r:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    183080 8i0r:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    183081 8i0r:N (3.0) BS04 ZN N/A GO:0000398 ... P41223 39068178
    183082 8i0s:7 (4.2) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183083 8i0s:7 (4.2) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183084 8i0s:7 (4.2) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183085 8i0s:C (4.2) BS03 MG N/A GO:0000398 ... Q15029 39068178
    183086 8i0s:K (4.2) BS02 ZN N/A GO:0000398 ... O15541 39068178
    183087 8i0s:N (4.2) BS02 ZN N/A GO:0000398 ... P41223 39068178
    183088 8i0s:N (4.2) BS03 ZN N/A GO:0000398 ... P41223 39068178
    183089 8i0t:7 (3.0) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183090 8i0t:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183091 8i0t:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183092 8i0t:K (3.0) BS02 ZN N/A GO:0000398 ... O15541 39068178
    183093 8i0t:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    183094 8i0t:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    183095 8i0u:7 (3.3) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183096 8i0u:7 (3.3) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183097 8i0u:7 (3.3) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183098 8i0u:N (3.3) BS02 ZN N/A GO:0000398 ... P41223 39068178
    183099 8i0u:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 39068178
    183100 8i0u:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 39068178
    183101 8i0v:7 (3.0) BS01 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183102 8i0v:7 (3.0) BS02 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183103 8i0v:7 (3.0) BS03 ZN N/A GO:0000398 ... Q7RTV0 39068178
    183104 8i0v:N (3.0) BS02 ZN N/A GO:0000398 ... P41223 39068178
    183105 8i0v:N (3.0) BS03 ZN N/A GO:0000398 ... P41223 39068178
    183106 8i0v:N (3.0) BS04 ZN N/A GO:0000398 ... P41223 39068178
    183107 8i0w:N (3.4) BS02 ZN N/A GO:0000398 ... P41223 39068178
    183108 8i0w:N (3.4) BS03 ZN N/A GO:0000398 ... P41223 39068178
    183109 8i0w:N (3.4) BS04 ZN N/A GO:0000398 ... P41223 39068178
    183110 8i0w:O (3.4) BS03 ZN N/A GO:0000398 ... Q9NW64 39068178
    183111 8i0w:O (3.4) BS04 ZN N/A GO:0000398 ... Q9NW64 39068178
    183112 8i0w:O (3.4) BS05 ZN N/A GO:0000398 ... Q9NW64 39068178
    183113 8i0w:Y (3.4) BS04 ZN N/A GO:0000349 ... Q9BW85 39068178
    183114 8i0y:A (1.792) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183115 8i15:A (2.19) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183116 8i16:A (2.24) BS01 ZN ? GO:0003677 ... A0A7C2YU39 37729124
    183117 8i16:A (2.24) BS02 ZN ? GO:0003677 ... A0A7C2YU39 37729124
    183118 8i1u:B (3.24) BS02 MG ? GO:0002199 ... P78371 38307855
    183119 8i23:D (3.03) BS03 ZN 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    183120 8i23:D (3.03) BS04 ZN 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    183121 8i23:D (3.03) BS05 MG 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    183122 8i24:D (3.36) BS03 ZN 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    183123 8i24:D (3.36) BS04 ZN 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    183124 8i24:D (3.36) BS05 MG 2.7.7.6 GO:0000287 ... A3DIZ5 37833284
    183125 8i29:A (2.72) BS01 CO 1.1.1.- GO:0000166 ... Q8R612 N/A
    183126 8i2b:A (2.2) BS03 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    183127 8i2b:B (2.2) BS03 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    183128 8i2p:A (1.797) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183129 8i2s:A (1.592) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183130 8i2u:A (1.989) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183131 8i36:A (1.887) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    183132 8i3a:A (3.04) BS02 MG ? GO:0005524 ... Q84TH5 37666961
    183133 8i3a:B (3.04) BS03 MG ? GO:0005524 ... Q84TH5 37666961
    183134 8i3f:B (1.62) BS02 ZN ? N/A Q04779 37236927
    183135 8i3f:B (1.62) BS03 ZN ? N/A Q04779 37236927
    183136 8i3n:A (1.73) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183137 8i3n:B (1.73) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183138 8i3n:C (1.73) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183139 8i3n:D (1.73) BS01 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183140 8i3o:A (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183141 8i3o:B (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183142 8i3o:C (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183143 8i3o:D (2.0) BS01 MN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183144 8i3p:A (1.3) BS02 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183145 8i3p:B (1.3) BS02 ZN 3.5.4.1 GO:0003824 ... Q12178 N/A
    183146 8i3q:A (3.1) BS02 ZN ? GO:0003677 ... A0A7C2YU39 37729124
    183147 8i3x:A (1.78) BS01 ZN ? GO:0004842 ... B8AY66 N/A
    183148 8i3x:A (1.78) BS02 ZN ? GO:0004842 ... B8AY66 N/A
    183149 8i3x:B (1.78) BS01 ZN ? GO:0004842 ... B8AY66 N/A
    183150 8i3x:B (1.78) BS02 ZN ? GO:0004842 ... B8AY66 N/A
    183151 8i3y:A (2.4) BS02 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    183152 8i3y:B (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    183153 8i3y:C (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    183154 8i3y:D (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    183155 8i40:D (2.79) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    183156 8i4d:A (1.06) BS05 CA 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    183157 8i52:A (1.58) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    183158 8i52:A (1.58) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    183159 8i52:D (1.58) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    183160 8i52:D (1.58) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    183161 8i5g:A (2.7) BS04 NA ? GO:0001518 ... Q15858 37270609
    183162 8i5j:A (1.602) BS01 MG ? GO:0015833 ... A0A085SLP2 37996461
    183163 8i5j:B (1.602) BS01 MG ? GO:0015833 ... A0A085SLP2 37996461
    183164 8i5k:A (1.219) BS01 MG ? GO:0015833 ... A0A085SLP2 37996461
    183165 8i5o:A (2.3) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183166 8i5p:A (2.35) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183167 8i5p:B (2.35) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183168 8i5q:A (2.2) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183169 8i5q:B (2.2) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183170 8i5r:A (1.65) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183171 8i5s:A (1.45) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183172 8i5t:A (1.5) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183173 8i5u:A (1.4) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    183174 8i5y:A (2.6) BS07 NA ? GO:0001518 ... Q15858 37270609
    183175 8i6m:A (2.59) BS02 MG ? N/A Q00IB3 N/A
    183176 8i6m:B (2.59) BS02 MG ? N/A Q00IB3 N/A
    183177 8i6m:C (2.59) BS02 MG ? N/A Q00IB3 N/A
    183178 8i6m:D (2.59) BS02 MG ? N/A Q00IB3 N/A
    183179 8i6m:E (2.59) BS02 MG ? N/A Q00IB3 N/A
    183180 8i6m:F (2.59) BS02 MG ? N/A Q00IB3 N/A
    183181 8i6n:A (2.2) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 N/A
    183182 8i6r:B (4.0) BS02 MG ? GO:0005524 ... Q9I6C0 37186861
    183183 8i6s:B (4.4) BS02 MG ? GO:0005524 ... Q9I6C0 37186861
    183184 8i6y:A (3.26) BS01 FE 1.13.11.58 GO:0005737 ... Q06327 N/A
    183185 8i6y:B (3.26) BS01 FE 1.13.11.58 GO:0005737 ... Q06327 N/A
    183186 8i7j:a (4.6) BS02 ZN ? GO:0003729 ... Q6CS01 N/A
    183187 8i7q:A (2.83) BS01 CO ? GO:0030246 ... P02866 38086668
    183188 8i7q:A (2.83) BS02 CA ? GO:0030246 ... P02866 38086668
    183189 8i87:B (3.1) BS03 MG ? GO:0003676 ... A0A316E3U6 37311833
    183190 8i8f:A (1.89) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    183191 8i8f:A (1.89) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    183192 8i8f:B (1.89) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    183193 8i8f:B (1.89) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    183194 8i8s:A (1.42) BS02 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    183195 8i8s:A (1.42) BS03 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    183196 8i8s:B (1.42) BS02 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    183197 8i8s:B (1.42) BS03 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    183198 8i8t:A (1.22) BS02 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    183199 8i8t:A (1.22) BS03 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375
    183200 8i8t:B (1.22) BS02 MN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 36914375

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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