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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    182801 8hpy:A (5.87) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182802 8hpy:A (5.87) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182803 8hpy:A (5.87) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182804 8hpy:B (5.87) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182805 8hpy:B (5.87) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182806 8hpy:B (5.87) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182807 8hpy:D (5.87) BS01 CA ? GO:0005102 ... O95970 N/A
    182808 8hpy:E (5.87) BS01 CA ? GO:0005102 ... O95970 N/A
    182809 8hq0:A () BS01 CA N/A N/A N/A N/A
    182810 8hq0:A () BS02 CA N/A N/A N/A N/A
    182811 8hq0:A () BS03 CA N/A N/A N/A N/A
    182812 8hq0:B () BS01 CA N/A N/A N/A N/A
    182813 8hq0:B () BS02 CA N/A N/A N/A N/A
    182814 8hq0:B () BS03 CA N/A N/A N/A N/A
    182815 8hq0:C () BS01 CA N/A N/A N/A N/A
    182816 8hq0:C () BS02 CA N/A N/A N/A N/A
    182817 8hq0:C () BS03 CA N/A N/A N/A N/A
    182818 8hq0:D () BS01 CA N/A N/A N/A N/A
    182819 8hq0:E () BS01 CA N/A N/A N/A N/A
    182820 8hq0:F () BS01 CA N/A N/A N/A N/A
    182821 8hq1:A (4.17) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182822 8hq1:A (4.17) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182823 8hq1:A (4.17) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182824 8hq1:B (4.17) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182825 8hq1:B (4.17) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182826 8hq1:B (4.17) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182827 8hq1:C (4.17) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182828 8hq1:C (4.17) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182829 8hq1:C (4.17) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182830 8hq1:D (4.17) BS01 CA ? GO:0005102 ... O95970 N/A
    182831 8hq1:E (4.17) BS01 CA ? GO:0005102 ... O95970 N/A
    182832 8hq1:F (4.17) BS01 CA ? GO:0005102 ... O95970 N/A
    182833 8hq2:A (2.93) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182834 8hq2:A (2.93) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182835 8hq2:A (2.93) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182836 8hq2:B (2.93) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    182837 8hq2:B (2.93) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    182838 8hq2:B (2.93) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    182839 8hq2:D (2.93) BS01 CA ? GO:0005102 ... O95970 N/A
    182840 8hq2:E (2.93) BS01 CA ? GO:0005102 ... O95970 N/A
    182841 8hq3:A (2.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 37595020
    182842 8hq4:A (2.12) BS01 MG 3.6.5.- GO:0000054 ... P62826 N/A
    182843 8hq5:A (2.25) BS01 MG 3.6.5.- GO:0000054 ... P62826 N/A
    182844 8hq6:A (2.03) BS01 MG 3.6.5.- GO:0000054 ... P62826 37595020
    182845 8hq9:D (2.7) BS01 MG ? GO:0015914 ... P64604 38347327
    182846 8hr0:A (3.34) BS01 ZN ? GO:0000139 ... Q15436 N/A
    182847 8hr0:B (3.34) BS02 ZN ? GO:0006886 ... O95486 N/A
    182848 8hrf:A (2.5) BS01 CA ? GO:0004553 ... A0A9Q3UC14 N/A
    182849 8hrf:B (2.5) BS01 CA ? GO:0004553 ... A0A9Q3UC14 N/A
    182850 8hrf:B (2.5) BS02 CA ? GO:0004553 ... A0A9Q3UC14 N/A
    182851 8hs0:A (1.42) BS02 MG 4.2.1.9 GO:0003824 ... Q9LIR4 N/A
    182852 8hsg:J (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182853 8hsg:J (3.2) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182854 8hsh:J (3.4) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182855 8hsh:J (3.4) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182856 8hsj:A (3.6) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182857 8hsj:B (3.6) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182858 8hsj:C (3.6) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182859 8hsl:A (5.8) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182860 8hsl:B (5.8) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182861 8hsl:D (5.8) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182862 8hsl:J (5.8) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182863 8hsl:J (5.8) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182864 8hsr:C (4.0) BS03 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182865 8hsr:D (4.0) BS02 MG 3.6.4.- GO:0003723 ... Q5SJE9 36753546
    182866 8hsr:J (4.0) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182867 8hsr:J (4.0) BS05 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182868 8hsr:J (4.0) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 36753546
    182869 8htb:A (1.3) BS02 CA ? GO:0003924 ... Q6GHP9 36854145
    182870 8htg:A (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    182871 8htg:B (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    182872 8htg:C (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    182873 8htg:D (2.91) BS01 MG ? GO:0001975 ... Q8CGK7 38062020
    182874 8hu6:A (2.33) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182875 8hu6:B (2.33) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182876 8hu6:C (2.33) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182877 8hu6:D (2.33) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182878 8hua:A (2.12) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 37032973
    182879 8hub:A (3.25) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182880 8hub:B (3.25) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182881 8hub:C (3.25) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182882 8hub:D (3.25) BS01 ZN 3.5.4.6 GO:0003876 ... Q01433 36563792
    182883 8huf:A (2.29) BS01 MG 3.6.5.- GO:0000054 ... P62826 38105606
    182884 8hug:A (2.15) BS01 MG 3.6.5.- GO:0000054 ... P62826 38105606
    182885 8huh:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    182886 8huh:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    182887 8hvr:D (3.35) BS03 MG 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    182888 8hvr:D (3.35) BS04 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    182889 8hvr:D (3.35) BS05 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 38427710
    182890 8hwr:A (2.18) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182891 8hx2:A (1.996) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182892 8hx4:A (1.896) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182893 8hx5:A (2.6) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182894 8hx5:A (2.6) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182895 8hx5:B (2.6) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182896 8hx5:B (2.6) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182897 8hx6:A (2.14) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182898 8hx7:A (1.95) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182899 8hx7:A (1.95) BS03 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182900 8hx7:B (1.95) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182901 8hx8:A (2.55) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182902 8hx8:A (2.55) BS03 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182903 8hx9:A (2.03) BS03 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182904 8hx9:B (2.03) BS02 MG 2.6.1.85 GO:0005737 ... F2RB79 37712435
    182905 8hxe:A (2.382) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182906 8hxe:A (2.382) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182907 8hxe:B (2.382) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182908 8hxe:B (2.382) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182909 8hxf:A (1.697) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182910 8hxg:A (1.702) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182911 8hxh:A (1.992) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182912 8hxi:A (1.81) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182913 8hxi:A (1.81) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182914 8hxi:B (1.81) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182915 8hxi:B (1.81) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 37791640
    182916 8hxn:A (1.35) BS01 ZN 3.5.2.6 GO:0008270 ... Q9RMI1 37791640
    182917 8hxo:A (1.902) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182918 8hxo:A (1.902) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182919 8hxo:B (1.902) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182920 8hxo:B (1.902) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182921 8hxp:A (1.94) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182922 8hxp:A (1.94) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182923 8hxp:B (1.94) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182924 8hxp:B (1.94) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182925 8hxu:A (1.945) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182926 8hxu:A (1.945) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182927 8hxu:B (1.945) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182928 8hxu:B (1.945) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182929 8hxv:A (2.603) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182930 8hxv:A (2.603) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182931 8hxv:B (2.603) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182932 8hxv:B (2.603) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182933 8hxw:A (2.39) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182934 8hxw:A (2.39) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182935 8hxw:B (2.39) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182936 8hxw:B (2.39) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182937 8hxx:L (3.0) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 37798513
    182938 8hxx:N (3.0) BS02 ZN ? GO:0000118 ... Q04779 37798513
    182939 8hxx:N (3.0) BS03 ZN ? GO:0000118 ... Q04779 37798513
    182940 8hxx:N (3.0) BS04 ZN ? GO:0000118 ... Q04779 37798513
    182941 8hxx:N (3.0) BS05 ZN ? GO:0000118 ... Q04779 37798513
    182942 8hxx:P (3.0) BS01 ZN ? GO:0000118 ... Q04779 37798513
    182943 8hxx:P (3.0) BS02 ZN ? GO:0000118 ... Q04779 37798513
    182944 8hxy:L (3.1) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37798513
    182945 8hxy:N (3.1) BS01 ZN ? GO:0000118 ... Q04779 37798513
    182946 8hxy:N (3.1) BS02 ZN ? GO:0000118 ... Q04779 37798513
    182947 8hxy:N (3.1) BS03 ZN ? GO:0000118 ... Q04779 37798513
    182948 8hxy:N (3.1) BS04 ZN ? GO:0000118 ... Q04779 37798513
    182949 8hy0:L (3.1) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37798513
    182950 8hy0:N (3.1) BS01 ZN ? GO:0000118 ... Q04779 37798513
    182951 8hy0:N (3.1) BS02 ZN ? GO:0000118 ... Q04779 37798513
    182952 8hy0:N (3.1) BS03 ZN ? GO:0000118 ... Q04779 37798513
    182953 8hy0:N (3.1) BS04 ZN ? GO:0000118 ... Q04779 37798513
    182954 8hy0:P (3.1) BS01 ZN ? GO:0000118 ... Q04779 37798513
    182955 8hy0:P (3.1) BS02 ZN ? GO:0000118 ... Q04779 37798513
    182956 8hy1:A (1.937) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182957 8hy1:A (1.937) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182958 8hy1:B (1.937) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182959 8hy1:B (1.937) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182960 8hy2:A (2.0) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182961 8hy2:A (2.0) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182962 8hy3:A (1.952) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 N/A
    182963 8hy6:A (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37791640
    182964 8hy6:A (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37791640
    182965 8hy6:B (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37791640
    182966 8hy6:B (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37791640
    182967 8hy9:A (1.462) BS02 CA 3.2.2.5 N/A E4TDY5 38129386
    182968 8hyb:A (2.193) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182969 8hyb:A (2.193) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182970 8hyb:B (2.193) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182971 8hyb:B (2.193) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182972 8hyb:C (2.193) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182973 8hyb:C (2.193) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182974 8hyb:D (2.193) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182975 8hyb:D (2.193) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 N/A
    182976 8hyc:A (1.151) BS01 ZN N/A GO:0008270 ... C7C422 N/A
    182977 8hyc:A (1.151) BS02 ZN N/A GO:0008270 ... C7C422 N/A
    182978 8hyc:B (1.151) BS01 ZN N/A GO:0008270 ... C7C422 N/A
    182979 8hyc:B (1.151) BS02 ZN N/A GO:0008270 ... C7C422 N/A
    182980 8hyd:A (1.71) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182981 8hyd:A (1.71) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 37791640
    182982 8hyi:A (2.85) BS01 CA ? GO:0005509 ... P22223 37531208
    182983 8hyi:A (2.85) BS02 CA ? GO:0005509 ... P22223 37531208
    182984 8hyi:B (2.85) BS01 CA ? GO:0005509 ... P22223 37531208
    182985 8hyi:B (2.85) BS02 CA ? GO:0005509 ... P22223 37531208
    182986 8hyj:A (4.3) BS03 MG 2.7.7.6 GO:0000418 ... Q5D869 37253723
    182987 8hyj:C (4.3) BS01 ZN ? GO:0000418 ... Q39212 37253723
    182988 8hyj:I (4.3) BS01 ZN ? GO:0000419 ... Q6NLH0 37253723
    182989 8hyj:J (4.3) BS01 ZN ? GO:0000418 ... Q8LFJ6 37253723
    182990 8hyj:L (4.3) BS01 ZN ? GO:0000418 ... Q9FLM8 37253723
    182991 8hym:A (1.794) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182992 8hyo:A (2.0) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182993 8hyp:A (1.749) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182994 8hys:A (1.7) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    182995 8hz2:A (2.6) BS01 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    182996 8hz2:A (2.6) BS02 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    182997 8hz2:A (2.6) BS03 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    182998 8hz2:A (2.6) BS04 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    182999 8hz2:A (2.6) BS05 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    183000 8hz2:B (2.6) BS01 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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