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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    182401 8h78:A (2.4) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    182402 8h78:A (2.4) BS03 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    182403 8h78:A (2.4) BS04 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    182404 8h78:A (2.4) BS05 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    182405 8h78:B (2.4) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    182406 8h78:B (2.4) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 36595440
    182407 8h78:B (2.4) BS03 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    182408 8h78:B (2.4) BS04 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    182409 8h78:B (2.4) BS05 CA 3.4.24.24 GO:0004222 ... P08253 36595440
    182410 8h7o:A (1.55) BS01 CA 3.4.21.62 GO:0004252 ... A0A7U5AV24 N/A
    182411 8h7p:A (1.82) BS02 CA 3.4.21.62 GO:0004252 ... A0A7U5AV24 N/A
    182412 8h7v:A (1.97) BS02 FE ? GO:0046872 ... S5TUM1 36974966
    182413 8h7v:B (1.97) BS02 FE ? GO:0046872 ... S5TUM1 36974966
    182414 8h7y:A (2.14) BS01 FE ? GO:0046872 ... S5TUM1 36974966
    182415 8h7y:B (2.14) BS01 FE ? GO:0046872 ... S5TUM1 36974966
    182416 8h8r:A (1.7) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    182417 8h8r:A (1.7) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    182418 8h8r:A (1.7) BS05 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    182419 8h8r:F (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    182420 8h8r:N (1.7) BS04 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    182421 8h8r:N (1.7) BS05 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    182422 8h8r:N (1.7) BS06 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    182423 8h8r:S (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    182424 8h8s:A (1.7) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    182425 8h8s:A (1.7) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    182426 8h8s:A (1.7) BS05 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    182427 8h8s:F (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    182428 8h8s:N (1.7) BS04 CU 7.1.1.9 GO:0004129 ... P00396 36708913
    182429 8h8s:N (1.7) BS05 MG 7.1.1.9 GO:0004129 ... P00396 36708913
    182430 8h8s:N (1.7) BS06 CA 7.1.1.9 GO:0004129 ... P00396 36708913
    182431 8h8s:S (1.7) BS01 ZN ? GO:0005740 ... P00428 36708913
    182432 8h92:A (2.6) BS01 MG ? N/A A0A6P3ZKP6 N/A
    182433 8h92:B (2.6) BS01 MG ? N/A A0A6P3ZKP6 N/A
    182434 8h97:A (2.194) BS01 CA 3.2.1.81 GO:0016798 ... A0A516RTC5 36746585
    182435 8h97:A (2.194) BS02 CA 3.2.1.81 GO:0016798 ... A0A516RTC5 36746585
    182436 8h98:A (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182437 8h98:B (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182438 8h99:A (1.94) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182439 8h99:B (1.94) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182440 8h9a:A (1.9) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182441 8h9b:A (2.23) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182442 8h9c:A (2.15) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    182443 8h9h:G (2.2) BS04 ZN ? N/A O95365 37013936
    182444 8h9h:G (2.2) BS05 ZN ? N/A O95365 37013936
    182445 8h9h:G (2.2) BS06 ZN ? N/A O95365 37013936
    182446 8h9i:B (2.77) BS02 MG ? GO:0001937 ... P25705 37244256
    182447 8h9i:F (2.77) BS02 MG 7.1.2.2 GO:0001525 ... P06576 37244256
    182448 8h9l:D (2.61) BS02 MG 7.1.2.2 GO:0001525 ... P06576 37244256
    182449 8h9p:B (3.02) BS02 MG ? GO:0001937 ... P25705 37244256
    182450 8h9p:C (3.02) BS02 MG ? GO:0001937 ... P25705 37244256
    182451 8h9t:B (2.77) BS02 MG ? GO:0001937 ... P25705 37244256
    182452 8h9v:B (3.02) BS02 MG ? GO:0001937 ... P25705 37244256
    182453 8h9v:F (3.02) BS02 MG 7.1.2.2 GO:0001525 ... P06576 37244256
    182454 8h9z:A (1.42) BS01 CA ? GO:0001786 ... P08758 N/A
    182455 8h9z:A (1.42) BS02 CA ? GO:0001786 ... P08758 N/A
    182456 8h9z:A (1.42) BS03 CA ? GO:0001786 ... P08758 N/A
    182457 8hac:A (2.32) BS02 MG 3.6.-.- GO:0005524 ... B7G933 38867239
    182458 8hac:B (2.32) BS02 MG 3.6.-.- GO:0005524 ... B7G933 38867239
    182459 8haw:A (2.1) BS01 CA 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    182460 8haw:B (2.1) BS02 CA 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    182461 8hb0:A (2.9) BS03 NA ? GO:0000017 ... P31639 38057552
    182462 8hb2:A (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182463 8hb2:B (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182464 8hb2:C (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182465 8hb2:D (3.06) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182466 8hb5:A (2.6) BS01 CA ? N/A E1BHM0 37521780
    182467 8hb5:A (2.6) BS02 CA ? N/A E1BHM0 37521780
    182468 8hb5:A (2.6) BS03 CA ? N/A E1BHM0 37521780
    182469 8hbb:A (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182470 8hbb:B (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182471 8hbb:C (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182472 8hbb:D (3.09) BS01 MN 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    182473 8hbf:A (3.1) BS02 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    182474 8hbf:A (3.1) BS03 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    182475 8hbh:A (3.1) BS01 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    182476 8hbh:A (3.1) BS02 MG 4.6.1.2 GO:0004383 ... Q02108 36972843
    182477 8hbm:A (3.3) BS03 ZN ? GO:0003700 ... P19793 37287811
    182478 8hbm:A (3.3) BS04 ZN ? GO:0003700 ... P19793 37287811
    182479 8hbm:B (3.3) BS03 ZN ? GO:0003700 ... Q96RI1 37287811
    182480 8hbm:B (3.3) BS04 ZN ? GO:0003700 ... Q96RI1 37287811
    182481 8hbm:E (3.3) BS03 ZN ? GO:0003700 ... P19793 37287811
    182482 8hbm:E (3.3) BS04 ZN ? GO:0003700 ... P19793 37287811
    182483 8hbm:F (3.3) BS03 ZN ? GO:0003700 ... Q96RI1 37287811
    182484 8hbm:F (3.3) BS04 ZN ? GO:0003700 ... Q96RI1 37287811
    182485 8hcc:A (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182486 8hcc:B (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182487 8hcc:C (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182488 8hcc:D (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182489 8hcd:B (2.0) BS01 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182490 8hcd:C (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182491 8hcd:D (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182492 8hcd:E (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182493 8hcd:E (2.0) BS03 CO 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182494 8hcg:A (1.799) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    182495 8hcj:A (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182496 8hcj:B (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182497 8hcj:C (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182498 8hcj:D (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182499 8hcj:E (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182500 8hcj:F (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182501 8hcj:G (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182502 8hcj:H (2.566) BS01 CA 3.2.1.37 GO:0004553 ... F0S5E9 N/A
    182503 8hct:A (2.26) BS01 FE 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    182504 8hct:A (2.26) BS02 FE 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    182505 8hct:A (2.26) BS03 CU 1.16.3.1 GO:0005737 ... A0A8F4Y4C2 36904538
    182506 8hd8:A (2.4) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    182507 8hd8:B (2.4) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    182508 8hdh:A (3.1) BS03 NA ? GO:0000017 ... P31639 38057552
    182509 8he1:A (1.61) BS01 ZN 3.5.1.41 GO:0005975 ... A0A2S4W2W0 37385996
    182510 8he2:A (1.61) BS02 ZN 3.5.1.41 GO:0005975 ... A0A2S4W2W0 37385996
    182511 8he4:A (1.93) BS01 ZN 3.5.1.41 GO:0005975 ... A0A2S4W2W0 37385996
    182512 8he5:A (6.95) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    182513 8he5:A (6.95) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    182514 8he5:A (6.95) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    182515 8he5:B (6.95) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37120012
    182516 8he5:C (6.95) BS01 ZN ? GO:0000428 ... C4R7L2 37120012
    182517 8he5:I (6.95) BS01 ZN ? GO:0000428 ... C4QY79 37120012
    182518 8he5:I (6.95) BS02 ZN ? GO:0000428 ... C4QY79 37120012
    182519 8he5:J (6.95) BS01 ZN ? GO:0000428 ... C4R009 37120012
    182520 8he5:L (6.95) BS01 ZN ? GO:0001054 ... F2QMI1 37120012
    182521 8he5:M (6.95) BS02 ZN ? GO:0000993 ... C4QZ45 37120012
    182522 8he6:B (1.7) BS01 CA ? N/A Q8YSS0 N/A
    182523 8heo:A (2.53) BS01 ZN 2.3.2.27 GO:0005737 ... Q8IUQ4 N/A
    182524 8heo:A (2.53) BS02 ZN 2.3.2.27 GO:0005737 ... Q8IUQ4 N/A
    182525 8heo:B (2.53) BS02 ZN 2.3.2.27 GO:0005737 ... Q8IUQ4 N/A
    182526 8heo:B (2.53) BS03 ZN 2.3.2.27 GO:0005737 ... Q8IUQ4 N/A
    182527 8hez:A (2.8) BS03 NA ? GO:0000017 ... P31639 38057552
    182528 8hf3:A (3.4) BS01 ZN 2.3.1.225 GO:0000139 ... Q9Y397 38182928
    182529 8hf3:A (3.4) BS02 ZN 2.3.1.225 GO:0000139 ... Q9Y397 38182928
    182530 8hf9:A (1.96) BS01 ZN 3.5.1.41 GO:0005975 ... A0A2S4W2W0 37385996
    182531 8hfa:A (2.64) BS01 ZN N/A GO:0005975 ... N/A 37385996
    182532 8hfa:B (2.64) BS01 ZN N/A GO:0005975 ... N/A 37385996
    182533 8hfa:C (2.64) BS01 ZN N/A GO:0005975 ... N/A 37385996
    182534 8hfa:D (2.64) BS01 ZN N/A GO:0005975 ... N/A 37385996
    182535 8hfa:E (2.64) BS01 ZN N/A GO:0005975 ... N/A 37385996
    182536 8hfb:A (2.24) BS01 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    182537 8hfb:A (2.24) BS02 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    182538 8hfb:B (2.24) BS01 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    182539 8hfb:B (2.24) BS02 NI 1.13.11.24 GO:0008127 ... P42106 36853654
    182540 8hfc:A (3.5) BS01 ZN 2.3.1.225 GO:0005515 ... Q06551 38182928
    182541 8hfc:A (3.5) BS02 ZN 2.3.1.225 GO:0005515 ... Q06551 38182928
    182542 8hfd:A (2.07) BS01 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182543 8hfd:A (2.07) BS02 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182544 8hfd:B (2.07) BS01 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182545 8hfd:B (2.07) BS02 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182546 8hfd:C (2.07) BS01 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182547 8hfd:C (2.07) BS02 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182548 8hfd:D (2.07) BS01 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182549 8hfd:D (2.07) BS02 ZN 3.5.2.5 GO:0000256 ... P77671 36677881
    182550 8hfh:A (1.8) BS02 MG ? GO:0003777 ... Q02224 36823439
    182551 8hfm:A (2.41) BS01 ZN 6.3.1.13 GO:0004817 ... A0QZY0 36499418
    182552 8hfn:A (1.98) BS02 ZN 6.3.1.13 GO:0004817 ... A0QZY0 36499418
    182553 8hfn:A (1.98) BS03 CA 6.3.1.13 GO:0004817 ... A0QZY0 36499418
    182554 8hfo:A (2.77) BS02 ZN 6.3.1.13 GO:0004817 ... A0QZY0 36499418
    182555 8hfo:A (2.77) BS03 CA 6.3.1.13 GO:0004817 ... A0QZY0 36499418
    182556 8hfp:A (1.82) BS01 ZN ? N/A Q8N8R7 38159574
    182557 8hfp:A (1.82) BS02 ZN ? N/A Q8N8R7 38159574
    182558 8hfp:B (1.82) BS01 ZN ? N/A Q8N8R7 38159574
    182559 8hfp:B (1.82) BS02 ZN ? N/A Q8N8R7 38159574
    182560 8hfp:C (1.82) BS01 ZN 2.1.1.366 GO:0003677 ... Q96T68 38159574
    182561 8hfp:D (1.82) BS01 ZN 2.1.1.366 GO:0003677 ... Q96T68 38159574
    182562 8hfr:B4 (2.64) BS02 MG ? GO:0002181 ... P0CX45 37258668
    182563 8hfv:A (2.1) BS01 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182564 8hfv:A (2.1) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182565 8hfv:A (2.1) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182566 8hfv:B (2.1) BS01 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182567 8hfv:B (2.1) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182568 8hfv:B (2.1) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182569 8hfv:C (2.1) BS01 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182570 8hfv:C (2.1) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182571 8hfv:C (2.1) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182572 8hfv:C (2.1) BS04 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182573 8hfv:D (2.1) BS01 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182574 8hfv:D (2.1) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182575 8hfv:D (2.1) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182576 8hfv:D (2.1) BS04 ZN 3.4.22.15 GO:0006508 ... P07711 37990007
    182577 8hfx:E (2.98) BS01 ZN 3.4.-.- GO:0006508 ... A0A6J0Z472 37676003
    182578 8hfy:A (3.21) BS01 ZN 3.4.-.- GO:0004180 ... A0A6J0Z472 37676003
    182579 8hfz:E (2.71) BS01 ZN 3.4.-.- GO:0004180 ... A0A6J0Z472 37676003
    182580 8hg0:A (3.51) BS01 ZN 3.4.-.- GO:0006508 ... A0A6J0Z472 37676003
    182581 8hg1:A (2.8) BS03 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 36520947
    182582 8hg7:A (3.1) BS03 NA ? GO:0000017 ... P31639 38057552
    182583 8hgg:C (3.64) BS01 ZN 3.4.24.79 GO:0008237 ... Q13219 36550107
    182584 8hgg:D (3.64) BS01 ZN 3.4.24.79 GO:0008237 ... Q13219 36550107
    182585 8hgh:A (4.16) BS01 ZN 3.4.24.79 GO:0004175 ... P0AEX9
    Q13219    		 36550107
    182586 8hgh:B (4.16) BS01 ZN 3.4.24.79 GO:0004175 ... P0AEX9
    Q13219    		 36550107
    182587 8hgk:A (1.9) BS03 MG 3.4.21.92 GO:0004176 ... Q16740 37923710
    182588 8hh2:F (3.0) BS01 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182589 8hh3:F (4.3) BS01 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182590 8hh6:F (2.9) BS01 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182591 8hh9:F (3.6) BS02 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182592 8hha:A (3.4) BS02 MG 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    182593 8hha:F (3.4) BS01 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182594 8hhb:F (3.5) BS02 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182595 8hhc:F (3.3) BS01 MG 7.1.2.2 GO:0005515 ... P07677 N/A
    182596 8hhl:A (2.87) BS04 MG N/A GO:0003677 ... P0DXB1 37460897
    182597 8hhl:A (2.87) BS05 ZN N/A GO:0003677 ... P0DXB1 37460897
    182598 8hhm:A (3.08) BS04 ZN N/A GO:0003677 ... P0DXB1 37460897
    182599 8hhv:A (1.6) BS01 CA N/A N/A N/A 37726269
    182600 8hhv:B (1.6) BS01 CA N/A N/A N/A 37726269
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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