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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181601 8git:A (2.72) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181602 8git:A (2.72) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    181603 8git:A (2.72) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181604 8git:C (2.72) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181605 8git:C (2.72) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181606 8git:C (2.72) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    181607 8giy:B (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181608 8giy:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181609 8giy:D (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181610 8giy:E (3.7) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 N/A
    181611 8giz:B (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181612 8giz:C (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181613 8giz:D (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181614 8giz:E (2.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 N/A
    181615 8gj0:B (2.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181616 8gj0:C (2.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181617 8gj0:D (2.9) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181618 8gj0:E (2.9) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 N/A
    181619 8gj1:B (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181620 8gj1:C (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181621 8gj1:D (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181622 8gj1:E (3.0) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 N/A
    181623 8gj2:B (2.6) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181624 8gj2:D (2.6) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181625 8gj2:E (2.6) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 N/A
    181626 8gj3:B (2.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181627 8gj3:C (2.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181628 8gj3:D (2.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 N/A
    181629 8gj3:E (2.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 N/A
    181630 8gju:A (2.79) BS02 MG 3.6.-.- GO:0003924 ... Q8IVH4 37468522
    181631 8gju:B (2.79) BS02 MG 3.6.-.- GO:0003924 ... Q8IVH4 37468522
    181632 8gju:D (2.79) BS02 MG 3.6.-.- GO:0003924 ... Q8IVH4 37468522
    181633 8gju:F (2.79) BS03 MG 3.6.-.- GO:0003924 ... Q8IVH4 37468522
    181634 8gk8:A (2.68) BS04 MN 6.4.1.1 GO:0003824 ... A0A3A5LTU8 37603581
    181635 8gk8:B (2.68) BS01 MN 6.4.1.1 GO:0003824 ... A0A3A5LTU8 37603581
    181636 8gk8:C (2.68) BS02 MN 6.4.1.1 GO:0003824 ... A0A3A5LTU8 37603581
    181637 8gk8:D (2.68) BS02 MN 6.4.1.1 GO:0003824 ... A0A3A5LTU8 37603581
    181638 8gkh:P (2.7) BS04 MG ? GO:0008643 ... A0A0L0H5U9
    P0AEX9    		 37380027
    181639 8gkh:P (2.7) BS05 MG ? GO:0008643 ... A0A0L0H5U9
    P0AEX9    		 37380027
    181640 8gkh:P (2.7) BS06 ZN ? GO:0008643 ... A0A0L0H5U9
    P0AEX9    		 37380027
    181641 8gkq:C (1.65) BS01 CA 3.4.21.63 GO:0004252 ... P28296 37864071
    181642 8gkr:A (2.784) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    181643 8gkr:A (2.784) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    181644 8glp:LC (1.67) BS03 MG ? GO:0002181 ... P36578 37020024
    181645 8glp:LD (1.67) BS03 MG ? GO:0000027 ... P46777 37020024
    181646 8glp:LD (1.67) BS04 MG ? GO:0000027 ... P46777 37020024
    181647 8glp:LH (1.67) BS02 MG ? GO:0002181 ... P32969 37020024
    181648 8glp:LL (1.67) BS03 MG ? GO:0001824 ... P26373 37020024
    181649 8glp:LL (1.67) BS04 MG ? GO:0001824 ... P26373 37020024
    181650 8glp:LO (1.67) BS02 MG ? GO:0002181 ... P40429 37020024
    181651 8glp:LO (1.67) BS03 MG ? GO:0002181 ... P40429 37020024
    181652 8glp:LP (1.67) BS03 MG ? GO:0002181 ... P18621 37020024
    181653 8glp:LP (1.67) BS04 MG ? GO:0002181 ... P18621 37020024
    181654 8glp:LQ (1.67) BS02 MG ? GO:0002181 ... Q07020 37020024
    181655 8glp:LS (1.67) BS03 MG ? GO:0002181 ... Q02543 37020024
    181656 8glp:LY (1.67) BS03 MG ? GO:0002181 ... P61254 37020024
    181657 8glp:Ld (1.67) BS02 MG ? GO:0002181 ... P62899 37020024
    181658 8glp:Lg (1.67) BS02 ZN ? GO:0002181 ... P49207 37020024
    181659 8glp:Lj (1.67) BS03 ZN ? GO:0002181 ... P61927 37020024
    181660 8glp:Lm (1.67) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181661 8glp:Lo (1.67) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    181662 8glp:Lo (1.67) BS05 MG ? GO:0003735 ... J3KQN4 37020024
    181663 8glp:Lp (1.67) BS02 ZN ? GO:0002181 ... P61513 37020024
    181664 8glp:Lp (1.67) BS03 MG ? GO:0002181 ... P61513 37020024
    181665 8glp:Lr (1.67) BS02 MG ? GO:0002181 ... P46779 37020024
    181666 8glp:SF (1.67) BS03 MG ? GO:0000028 ... P46782 37020024
    181667 8glp:Sa (1.67) BS02 ZN ? GO:0002181 ... P62854 37020024
    181668 8glp:Sd (1.67) BS02 ZN ? GO:0002181 ... P62273 37020024
    181669 8glp:Sd (1.67) BS03 MG ? GO:0002181 ... P62273 37020024
    181670 8glp:Sf (1.67) BS02 ZN ? GO:0002181 ... P62979 37020024
    181671 8glu:E (3.57) BS02 MG N/A GO:0003677 ... P05846 38834067
    181672 8glu:X (3.57) BS01 ZN N/A N/A P13991 38834067
    181673 8glv:0B (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181674 8glv:0N (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181675 8glv:1Z (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181676 8glv:2B (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181677 8glv:2F (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181678 8glv:3F (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181679 8glv:3P (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181680 8glv:A2 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181681 8glv:Ao (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181682 8glv:BN (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181683 8glv:BT (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181684 8glv:Bb (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181685 8glv:C9 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181686 8glv:Ch (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181687 8glv:D1 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181688 8glv:D5 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181689 8glv:D7 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181690 8glv:E7 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181691 8glv:EC (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181692 8glv:EP (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181693 8glv:ER (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181694 8glv:ET (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181695 8glv:EV (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181696 8glv:EX (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181697 8glv:Ee (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181698 8glv:Ei (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181699 8glv:F5 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181700 8glv:F7 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181701 8glv:F9 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181702 8glv:Fj (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181703 8glv:G9 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181704 8glv:IL (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181705 8glv:Im (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181706 8glv:Iz (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181707 8glv:KK (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181708 8glv:LI (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181709 8glv:Lv (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181710 8glv:Lx (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181711 8glv:M1 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181712 8glv:M7 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181713 8glv:MH (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181714 8glv:V9 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181715 8glv:W9 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181716 8glv:X3 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181717 8glv:X5 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181718 8glv:X7 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181719 8glv:Y1 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181720 8glv:Y5 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181721 8glv:Z3 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181722 8glv:Z5 (3.1) BS01 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181723 8glv:Z9 (3.1) BS02 MG 3.6.5.- GO:0005200 ... P09204 37258679
    181724 8glw:B (3.51) BS02 MG N/A GO:0003677 ... P05846 38834067
    181725 8glw:C (3.51) BS02 MG N/A GO:0003677 ... P05846 38834067
    181726 8glw:D (3.51) BS02 MG N/A GO:0003677 ... P05846 38834067
    181727 8glw:X (3.51) BS02 ZN N/A N/A P13991 38834067
    181728 8glw:Y (3.51) BS01 ZN N/A N/A P13991 38834067
    181729 8glx:A (3.88) BS02 MG N/A GO:0003677 ... P05846 38834067
    181730 8glx:E (3.88) BS02 MG N/A GO:0003677 ... P05846 38834067
    181731 8glx:X (3.88) BS03 ZN N/A N/A P13991 38834067
    181732 8glx:Y (3.88) BS02 ZN N/A N/A P13991 38834067
    181733 8gm4:A (2.12) BS03 ZN 2.7.11.20 GO:0004674 ... O00418 37172726
    181734 8gm4:B (2.12) BS02 CA ? GO:0000086 ... P0DP23 37172726
    181735 8gm4:B (2.12) BS03 CA ? GO:0000086 ... P0DP23 37172726
    181736 8gm5:A (2.12) BS03 ZN 2.7.11.20 GO:0004674 ... O00418 37172726
    181737 8gm5:B (2.12) BS02 CA ? GO:0000086 ... P0DP23 37172726
    181738 8gm5:B (2.12) BS03 CA ? GO:0000086 ... P0DP23 37172726
    181739 8gme:A (4.98) BS02 ZN ? GO:0003677 ... P03695 N/A
    181740 8gme:B (4.98) BS01 ZN ? GO:0003677 ... P03695 N/A
    181741 8gms:F (3.31) BS02 MG ? GO:0003677 ... A0A485JBB4 36598938
    181742 8gmt:F (3.31) BS02 MG ? GO:0000725 ... P0A7G6 36598938
    181743 8gmt:G (3.31) BS02 MG ? GO:0000725 ... P0A7G6 36598938
    181744 8gn0:A (2.15) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    181745 8gn0:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    181746 8gn0:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    181747 8gn0:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    181748 8gn0:a (2.15) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    181749 8gn0:c (2.15) BS02 CA ? GO:0005737 ... D0VWR7 37209822
    181750 8gn0:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    181751 8gn0:j (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    181752 8gn0:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    181753 8gn1:A (2.1) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    181754 8gn1:D (2.1) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    181755 8gn1:J (2.1) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    181756 8gn1:O (2.1) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    181757 8gn1:a (2.1) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    181758 8gn1:c (2.1) BS02 CA ? GO:0005737 ... D0VWR7 37209822
    181759 8gn1:d (2.1) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    181760 8gn1:j (2.1) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    181761 8gn1:o (2.1) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    181762 8gn2:A (1.95) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    181763 8gn2:D (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    181764 8gn2:J (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    181765 8gn2:O (1.95) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    181766 8gn2:a (1.95) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 37209822
    181767 8gn2:c (1.95) BS02 CA ? GO:0005737 ... D0VWR7 37209822
    181768 8gn2:d (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    181769 8gn2:j (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 37209822
    181770 8gn2:o (1.95) BS01 CA ? GO:0009523 ... D0VWR2 37209822
    181771 8gn3:A (1.8) BS04 ZN ? N/A Q96DT7 36657642
    181772 8gn3:A (1.8) BS05 ZN ? N/A Q96DT7 36657642
    181773 8gn3:B (1.8) BS03 ZN ? N/A Q96DT7 36657642
    181774 8gn3:B (1.8) BS04 ZN ? N/A Q96DT7 36657642
    181775 8gn4:A (1.9) BS03 ZN ? N/A Q96DT7 36657642
    181776 8gn4:A (1.9) BS04 ZN ? N/A Q96DT7 36657642
    181777 8gna:A (2.8) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36484100
    181778 8gna:A (2.8) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36484100
    181779 8gna:A (2.8) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36484100
    181780 8gna:A (2.8) BS06 ZN ? GO:0003723 ... A0A0B0EGF3 36484100
    181781 8gnk:A (3.1) BS02 NA ? GO:0003333 ... P23978 37400654
    181782 8go3:A (3.09) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 N/A
    181783 8goa:A (2.9) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 37165682
    181784 8goa:B (2.9) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 37165682
    181785 8goa:C (2.9) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 37165682
    181786 8goa:D (2.9) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 37165682
    181787 8gob:A (2.6) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 37165682
    181788 8gob:B (2.6) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 37165682
    181789 8gpc:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181790 8gpc:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181791 8gpc:B (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181792 8gpc:B (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181793 8gpd:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181794 8gpd:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181795 8gpd:B (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181796 8gpd:B (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181797 8gpe:A (1.4) BS01 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181798 8gpe:A (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181799 8gpe:B (1.4) BS02 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    181800 8gpe:B (1.4) BS03 ZN 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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